mRNA_Ecto-sp6_S_contig10.550.1 (mRNA) Ectocarpus species6 EcLAC_371
|
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.550.1 vs. uniprot
Match: D7FN77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN77_ECTSI) HSP 1 Score: 1036 bits (2679), Expect = 0.000e+0 Identity = 554/564 (98.23%), Postives = 560/564 (99.29%), Query Frame = 3
Query: 207 MEPSIEKELPRADLAKIEEFESKRSGYFADEYRKSSMYWSSLCDVMSANDGPTQQVLSYVAGKLEADRVNTAATFANADKVFGEKKGATKLRHDKIRHEEQKAKTKGVTASIDVELLVAGGPGKEAPTNSAVKAIWEMAEMDCRAARNRDALCDELEHEDMLGKVKVMGKEMQRRFKELSDEGTACLLSLANIDKRVGQAFLHLKETLGDQVGGKTLHEDVWFLFCSYQTAVVHQKEAWNAVTAKLGEVFAKMKDLEGERRTTLREFMLSANHAIGDSWKKMCTLSGPANDAAKAVDASRGAVDQEVHSLAAVRMEEKKHDTSKEHILANTTHIVRADPAPADDSFIETLSAPLESPLVRSMMMIERREGKAIGSKYHAGLMVLSWDGFLHFFDIPSSSTVKKDASASAAFQEISPSISLDDLLANKKDLDEVLLFKSTHTLRLDESSTVEAKSSHKSHKIEVKGKMNITSIKRHFGSSSKTVTFRTATEAEMNNTVEEITDCIYTRGGMQTALTGRMSTDSRSSFGSSFNSTGSGSTKFPPKEXXXXXXXXXXXXXXXXTVAP 1898
MEPSIEKELPRADLAK+EEFESKRSGYFADEYRKSSMYWSSLCDVMSANDGPTQQVLSYVAGKLEADR+NTAA F NADKVFGEKKGATKLRHDKIRHEEQKAKTKGVTASIDVELLVAGGPGKEAPTNSAVKAIWEMAEMDCRAARNRDALCDELEHEDMLGKVKVMGKEMQRRFKELS+EGTACLLSLANIDKRVGQAFLHLKETLGDQVGGKTLHEDVWFLFCSYQTAVVHQKEAWNAVTAKLGEVFAKMKDLEGERRTTLREFMLSANHAIGD+WKKMCTLSGPANDAAKAVDASRGAVDQEVHSLAAVRMEEKKHD+SKEHILANTTHIVRADPAPADDSFIETLSAPLESPLVRSMMMIERREGKAIGSKYHAGLMVLSWDGFLHFFDIPSSSTVKKDASASAAFQEISPSISLDDLLANKKDLDEVL+FKSTHTLRLDESSTVEAKSSHKSHKIEVKGKMNITSIKRHFGSSSKTVTFRTATEAEMNNTVEEITDCIYTRGGMQTALTGRMSTDSRSSFGSSFNSTGSGSTK PPKEXXXXXXXXXXXXXXX TVAP
Sbjct: 1 MEPSIEKELPRADLAKVEEFESKRSGYFADEYRKSSMYWSSLCDVMSANDGPTQQVLSYVAGKLEADRINTAAIFVNADKVFGEKKGATKLRHDKIRHEEQKAKTKGVTASIDVELLVAGGPGKEAPTNSAVKAIWEMAEMDCRAARNRDALCDELEHEDMLGKVKVMGKEMQRRFKELSEEGTACLLSLANIDKRVGQAFLHLKETLGDQVGGKTLHEDVWFLFCSYQTAVVHQKEAWNAVTAKLGEVFAKMKDLEGERRTTLREFMLSANHAIGDNWKKMCTLSGPANDAAKAVDASRGAVDQEVHSLAAVRMEEKKHDSSKEHILANTTHIVRADPAPADDSFIETLSAPLESPLVRSMMMIERREGKAIGSKYHAGLMVLSWDGFLHFFDIPSSSTVKKDASASAAFQEISPSISLDDLLANKKDLDEVLMFKSTHTLRLDESSTVEAKSSHKSHKIEVKGKMNITSIKRHFGSSSKTVTFRTATEAEMNNTVEEITDCIYTRGGMQTALTGRMSTDSRSSFGSSFNSTGSGSTKLPPKEXXXXXXXXXXXXXXXSTVAP 564
BLAST of mRNA_Ecto-sp6_S_contig10.550.1 vs. uniprot
Match: A0A6H5L7U6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7U6_9PHAE) HSP 1 Score: 974 bits (2517), Expect = 0.000e+0 Identity = 507/541 (93.72%), Postives = 526/541 (97.23%), Query Frame = 3
Query: 207 MEPSIEKELPRADLAKIEEFESKRSGYFADEYRKSSMYWSSLCDVMSANDGPTQQVLSYVAGKLEADRVNTAATFANADKVFGEKKGATKLRHDKIRHEEQKAKTKGVTASIDVELLVAGGPGKEAPTNSAVKAIWEMAEMDCRAARNRDALCDELEHEDMLGKVKVMGKEMQRRFKELSDEGTACLLSLANIDKRVGQAFLHLKETLGDQVGGKTLHEDVWFLFCSYQTAVVHQKEAWNAVTAKLGEVFAKMKDLEGERRTTLREFMLSANHAIGDSWKKMCTLSGPANDAAKAVDASRGAVDQEVHSLAAVRMEEKKHDTSKEHILANTTHIVRADPAPADDSFIETLSAPLESPLVRSMMMIERREGKAIGSKYHAGLMVLSWDGFLHFFDIPSSSTVKKDASASAAFQEISPSISLDDLLANKKDLDEVLLFKSTHTLRLDESSTVEAKSSHKSHKIEVKGKMNITSIKRHFGS--SSKTVTFRTATEAEMNNTVEEITDCIYTRGGMQTALTGRMSTDSRSSFGSSFNSTGSGSTK 1823
MEPSIEKELPRADLA+IEEFESKRSGYFADEYRKSSMYWSSLCDVMS NDGPTQQVLSYVAGKLEADRVNTAA FANADK+F EKKGATKLRHDKIRHEEQKAKTKGVTASIDVELLVAGGP KEAPTN+AVKAIWEMAEMDCRAARNRDALCDELEHEDMLGKVKVMGKEMQRRFKELS+EGTACLLSLANIDKRVGQAFLHLKETLGDQVGGKTLHEDVWFLFCSYQTAVVHQKEAW+AVTAKLGEVFAKMK+LEGERRTTLREFMLSAN AIGD+WK +CTL GPA+DAA AVDA+RGAVDQEVHSLAAVRMEEKKH+TSKEH+LANTTHIVRADPAPADDSFIETLSAPLESPLVR MMMIERREGKAIGSKY+AGLMVLSWDGFLHFFDIPSSSTVK+DASASAAFQEISPSISLDDLLANKKDLDEVL+FKSTHTL DESSTVEAKSSHKSHKIEVKG+ NITSIKRHFGS +SKTVTFRTATEAEMNN VEEITDCIYTRGGMQTA+TGRMSTDSRSSFGSSF+STGSGSTK
Sbjct: 1 MEPSIEKELPRADLAEIEEFESKRSGYFADEYRKSSMYWSSLCDVMSLNDGPTQQVLSYVAGKLEADRVNTAAIFANADKLFDEKKGATKLRHDKIRHEEQKAKTKGVTASIDVELLVAGGPEKEAPTNNAVKAIWEMAEMDCRAARNRDALCDELEHEDMLGKVKVMGKEMQRRFKELSEEGTACLLSLANIDKRVGQAFLHLKETLGDQVGGKTLHEDVWFLFCSYQTAVVHQKEAWDAVTAKLGEVFAKMKNLEGERRTTLREFMLSANRAIGDNWKTLCTLPGPASDAATAVDANRGAVDQEVHSLAAVRMEEKKHETSKEHVLANTTHIVRADPAPADDSFIETLSAPLESPLVRKMMMIERREGKAIGSKYYAGLMVLSWDGFLHFFDIPSSSTVKRDASASAAFQEISPSISLDDLLANKKDLDEVLMFKSTHTLWFDESSTVEAKSSHKSHKIEVKGRTNITSIKRHFGSGTTSKTVTFRTATEAEMNNIVEEITDCIYTRGGMQTAVTGRMSTDSRSSFGSSFSSTGSGSTK 541
BLAST of mRNA_Ecto-sp6_S_contig10.550.1 vs. uniprot
Match: A0A6H5KEN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEN9_9PHAE) HSP 1 Score: 102 bits (255), Expect = 7.840e-19 Identity = 80/319 (25.08%), Postives = 134/319 (42.01%), Query Frame = 3
Query: 237 RADLAKIEEFESKRSGYFADEYRKSSMYWSSLCDVMSANDGPTQQVLSYVAGKLEADRVNTAATFANADKVFGEKKGATKLRHDKIRHEEQKAKTKGVTASIDVELLVAGGP---GKEAPTNSAVKAIWEMAEMDCRAARNRDALCDELEHEDMLGKVKVMGKEMQRRFKELSDEGTACL-------------------LSLANIDKRVGQAFLHLKETLGDQVGGKTLHEDVWFLFCSYQTAVVHQKEAWNAVTAKLGEVFAKMKDLEGERRTTLREFMLSANHAIGDSWKKMCTLSGPANDAAKAVDASRGAVDQEV 1127
R L + FE +R +F ++Y S+YW +++ + ++ +SY KL A + +A D+V + G T+ +K R + K + + G G SA+ ++EM E A R D +C E + ++ M K++ RF E+ +GTACL + A++++ A TL D G D+W +Y+ AV Q W V+AKLG++F KMKD+E ERR ++ + + W+ + L P ++ R +DQEV
Sbjct: 133 RKALDETRTFEQRRHSHFGEKYDGDSLYWKCFVELIRRSQANNRRAISYATQKLSATHAYAKSLYAIRDRVDSLEPGTTEALREKERRKNNHKKWPPQQLPLPPQQRRGSGTDAGGLPPQPASALDCLFEMEEWT--AMRTID-MCQEAHVTVIDNQLNAMVKKLDERFAEMVGQGTACLRLMHSAEMNSVKAYGRYQEIVTASLEREASPARATAPLTLRDVAGS-----DIWLADMNYRVAVTQQARVWKGVSAKLGDLFGKMKDIEVERRKAIQGGLTAMVQLQDALWRDLPALKDPVLHTLDRINVDRHLLDQEV 443
BLAST of mRNA_Ecto-sp6_S_contig10.550.1 vs. uniprot
Match: A0A836CKX7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKX7_9STRA) HSP 1 Score: 102 bits (254), Expect = 2.010e-18 Identity = 88/339 (25.96%), Postives = 142/339 (41.89%), Query Frame = 3
Query: 264 FESKRSGYFADEYRKSSMYWSSLCDVMSANDGPTQQVLSYVAGKLEADRVNTAATFANADKVFGEKKGATKLRHDKIR---HEEQKAKTKG--------------------VTASIDVELLVAG---------------GPGKEAPTNSAVKAIWEMAEMDCRAARNRDALCDELEHEDMLGKV-KVMGKEMQRRFKELSDEGTACLLSLANIDKRVGQAFL---HLKETLGDQVGGKTLHE---------DVWFLFCSYQTAVVHQKEAWNAVTAKLGEVFAKMKDLEGERRTTLREFMLSANHAIGDSWKKMCTLSGPANDAAKAVDASRGAVDQEV 1127
FE +RS YF+ ++ + +YW S +++ N + +SY+ KL A R + D V G K G T ++ R +E A+ +G +TA D + A G + + A+ M +M+ ++A CDE+E D+LGK+ + M ++ RF + G ACL L++ + +A L+E V E DVW +Y+ AV Q A +A +A+LG +F MKDLE RRT +R +LS A W+++ L P + ++ R +D EV
Sbjct: 4 FEEQRSSYFSTLFQNNQLYWQSFVEIIRRNQTSNDKTISYLTAKLAAARAYAQLLYGIRDSVTGNKMGTTAALRERERAGAKKEAAARGRGASVLSVLRVIMDGHNDSCMRLTACADAAMSSAAMRQASARASSQLPPRGTSEMGSSGRPPSALEHMFDMEEKSAMMMLTFCDEMES-DVLGKMLQAMATDLGERFTRMVATGDACLKVLSDNEASTVKATTLVGSLREPAPGSVAAAAAQEEGAAAAPRSDVWITDMAYRVAVTQQLAACDAASAQLGALFGHMKDLEVNRRTAIRNALLSLLQAQDLVWRQLPILKDPVLQVLERINTDRRFLDGEV 341
BLAST of mRNA_Ecto-sp6_S_contig10.550.1 vs. uniprot
Match: D8LNW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNW9_ECTSI) HSP 1 Score: 99.8 bits (247), Expect = 1.320e-17 Identity = 91/342 (26.61%), Postives = 148/342 (43.27%), Query Frame = 3
Query: 567 GPGKEAPTNSAVKAIWEMAEMDCRAARNRDALCDELEHEDMLGK-VKVMGKEMQRRFKELSDEGTACLLSLANIDKRVGQAFLHLKETLGDQVGGK----------TLHE----DVWFLFCSYQTAVVHQKEAWNAVTAKLGEVFAKMKDLEGERRTTLREFMLSANHAIGDSWKKMCTLSGPANDAAKAVDASRGAVDQEVHS---LAAVRMEEKKHDTSKEHILANTTH-------------------------IVRADPAPADDSFIETLSAPLESPLVRSMMMIERREGKAIGSKYHAGLMVLSWDGFLHFFDIPSSSTVKK---DASASAAFQEISP 1454
G G SA+ ++EM E A R D +C E H ++ K + M K++ RF E+ +GTACL + + + +A+ +E + +G + TL + DVW +Y+ AV Q W V+AKLG++F +MKD+E ERR ++ + + W+ + L P ++ R +DQEV + A R+ + + + R++ PAD F+ L +PL S L+ M+ERRE I S++ L +L+ D +L FD+P + K +A S AF E+ P
Sbjct: 204 GGGLPPQPASALDCLFEMEEYT--AMRTID-MCQEA-HVTVIDKQLNAMVKKLDDRFAEMVGQGTACLRLMHSAEMNSAKAYGRYQEVVTASLGREASPARATAPLTLRDVAGSDVWLADMNYRVAVTQQARVWKGVSAKLGDLFGRMKDIEVERRKAIQGGLTAMVQLQDALWRDLPALKEPVVHTLDRINVDRHLLDQEVRQQMRVGAARLLAGRQENGAGXXXXXXXXXXXXXXPAGXXXXXXXXXXXXGGGSVERSETMPAD--FLAGLESPLASSLIARSTMLERREKAMIASRWILVLAILTHDSYLLLFDVPRGTAAHKKQLNARTSEAFAELVP 539
BLAST of mRNA_Ecto-sp6_S_contig10.550.1 vs. uniprot
Match: A0A7S3Q068_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q068_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 7.990e-10 Identity = 100/440 (22.73%), Postives = 183/440 (41.59%), Query Frame = 3
Query: 255 IEEFESKRSGYFADEYRKSSMYWSSLCDVMSANDGPTQQVLSYVAGKLEADRVNTAATFANA-DKVFGEKKGATKLRHDKIRHEEQKA---------------------KTKGVTASIDVELLVAGGPGKEAPTNSAVKAIWEM-AEMDCRAARNRDALCDELEHEDMLGKVKVMGKEMQRRFKELSDEGTACLLSLANIDKRVGQAF--------LHLKETLGDQVGGKTLHE----DVWFLFCSYQTAVVHQKEAWNAVTAKLGEVFAKMKDLEGERRTTLREFMLSANHAIGDSWKKMCTLSGPANDAAKAVDASRGAVDQEVHSLAAVRMEEKKHDTSKEHILANTTHIVRADPAPADDSFIET---LSAPLESPLVRSMMMIERREGKAIGSKYHAGLMVLSWDGFLHFFDIPSSSTVKKDASASAAFQEISPSI 1460
+ +E+KR + + + +S+YW S D++S + T + + V G + A++ T A+A D++ G + R ++++ E +K K G ++ DV+ V+ + P +S V + + A+M + N + + D L K+ + KE++ +S G A + L ++ V +A+ L L + K + DVW + Y+ AV + W +A+L +FA +K++E RR LRE M+ W+ + L+ + ++ + + VR + + + E AN T P A I L +PL S L+ +I R+ K I S + L + DG+LH F++PS+S + A AFQ + P +
Sbjct: 122 LRSYEAKRRTIYTSKMKSTSIYWRSFRDLLSKSYQETDRAENLVRGTVVANKAYTEFLRASAEDRIDGNGMPVAEARGNRLKQERKKKYSSLGGGQMLMNLAMNNKIVEKVNGDSSIPDVQSSVSF---ENLPDDSLVSELVQCTADMADKFTENVNFIEDVA-----LTKLCELKKELEAELSVMSVLGDATIYELEKAEEDVQKAWAAFYSLACLADSNALTQKANIKGIDPNAVTDVWLVEMHYRMAVAYLTTVWEKSSAELSTLFAGVKEMECNRRFRLRELMVLFMERGERLWESLPPLAKSVLEILTKAPTDTKKIEANITEI--VREKARVLQRTDE---ANVTTDPLNGPGLAGVPEIRDDFELQSPLMSNLLIKTEVIWRKSDK-IMSIWKPCLAATTSDGYLHLFELPSTSNIVTKTPAEVAFQALVPPV 547 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig10.550.1 >prot_Ecto-sp6_S_contig10.550.1 ID=prot_Ecto-sp6_S_contig10.550.1|Name=mRNA_Ecto-sp6_S_contig10.550.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=663bp MEPSIEKELPRADLAKIEEFESKRSGYFADEYRKSSMYWSSLCDVMSANDback to top mRNA from alignment at Ecto-sp6_S_contig10:1354526..1367896+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig10.550.1 ID=mRNA_Ecto-sp6_S_contig10.550.1|Name=mRNA_Ecto-sp6_S_contig10.550.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=13371bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1354526..1367896+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1354526..1367896+ >mRNA_Ecto-sp6_S_contig10.550.1 ID=mRNA_Ecto-sp6_S_contig10.550.1|Name=mRNA_Ecto-sp6_S_contig10.550.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1989bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1354526..1367896+ (Ectocarpus species6 EcLAC_371)back to top |