mRNA_Ecto-sp6_S_contig10.532.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.532.1
Unique NamemRNA_Ecto-sp6_S_contig10.532.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.532.1 vs. uniprot
Match: D8LSN9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSN9_ECTSI)

HSP 1 Score: 508 bits (1308), Expect = 4.350e-179
Identity = 289/317 (91.17%), Postives = 292/317 (92.11%), Query Frame = 2 
Query:  140 MRFSPCWHAATISLLQTCSAGEGRHVHHARDPPPLATPTGSSPPLPLMAYAFFPSTRRALHPATTITSSRRSSVSKPRLGHRHRSATQRTTRMSKAARPGADSGVALWLDMRTAVLPAAQTLKTLYGELRQREEALGRSPEDPDWTLSRVPNPVGALLYAAEPEERAAEEMVALGESAAALPCFRLGGTDGTAVVVDVSSGHVVGVRVDPVGDNAAGXXXXXXXXXXXXXXXXXXXXXXGLVFLPGVRPSVWESGDMGTVLRIASSACTGAGKTLVVTXXXXXXXXXXXXXXXXXXXXMALLIEPMPELWEAGLLYL 1090
            MRFSPCWHAATISLLQTCSAGEGRHVHHARDPPPLATPTG+SPPLPLMAYAF PSTRRALHPATT TSSRRSS SKPRLGHRHRSATQRTTRMS+AARPGADSGVALWLDMRTAVLPAAQTLKTLYGELRQREEALGRSPED DWTLSRVPNPVGALLYAAEPEERAAEEMVALGE+AAALPCFRLGGTDGTAVVVDVSSGHVVGVRVDPVGDNAAGXXXXXXXXXXXXXXXXXXXXXXGLVFLPGVRPSVWESGDMGTVLRIASSAC GAGKTLVVT                    MALLIEPMPELWEAGLLYL
Sbjct:    1 MRFSPCWHAATISLLQTCSAGEGRHVHHARDPPPLATPTGASPPLPLMAYAFSPSTRRALHPATTTTSSRRSSASKPRLGHRHRSATQRTTRMSEAARPGADSGVALWLDMRTAVLPAAQTLKTLYGELRQREEALGRSPEDTDWTLSRVPNPVGALLYAAEPEERAAEEMVALGETAAALPCFRLGGTDGTAVVVDVSSGHVVGVRVDPVGDNAAGXXXXXXXXXXXXXXXXXXXXXXGLVFLPGVRPSVWESGDMGTVLRIASSACAGAGKTLVVTTTVLGVGGTGAAEDGTTPPPMALLIEPMPELWEAGLLYL 317
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSN9_ECTSI4.350e-17991.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:1180668..1182066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1093
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_003160.1
Cds size954
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348705.9468307-CDS-Ecto-sp6_S_contig10:1180667..11807871682348705.9468307-CDS-Ecto-sp6_S_contig10:1180667..1180787Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1180668..1180787 -
1682348705.9546275-CDS-Ecto-sp6_S_contig10:1180844..11816781682348705.9546275-CDS-Ecto-sp6_S_contig10:1180844..1181678Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1180845..1181678 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348705.9619782-UTR-Ecto-sp6_S_contig10:1181678..11817101682348705.9619782-UTR-Ecto-sp6_S_contig10:1181678..1181710Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 1181679..1181710 -
1682348705.9715497-UTR-Ecto-sp6_S_contig10:1181959..11820661682348705.9715497-UTR-Ecto-sp6_S_contig10:1181959..1182066Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 1181960..1182066 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.532.1prot_Ecto-sp6_S_contig10.532.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 1180668..1181678 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.532.1

>prot_Ecto-sp6_S_contig10.532.1 ID=prot_Ecto-sp6_S_contig10.532.1|Name=mRNA_Ecto-sp6_S_contig10.532.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=318bp
MRFSPCWHAATISLLQTCSAGEGRHVHHARDPPPLATPTGSSPPLPLMAY
AFFPSTRRALHPATTITSSRRSSVSKPRLGHRHRSATQRTTRMSKAARPG
ADSGVALWLDMRTAVLPAAQTLKTLYGELRQREEALGRSPEDPDWTLSRV
PNPVGALLYAAEPEERAAEEMVALGESAAALPCFRLGGTDGTAVVVDVSS
GHVVGVRVDPVGDNAAGGAAGSSAAMGIVAAAQQQRDGGGLVFLPGVRPS
VWESGDMGTVLRIASSACTGAGKTLVVTTTVLGAGGTGAAEDGTTPPPMA
LLIEPMPELWEAGLLYL*
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mRNA from alignment at Ecto-sp6_S_contig10:1180668..1182066-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.532.1 ID=mRNA_Ecto-sp6_S_contig10.532.1|Name=mRNA_Ecto-sp6_S_contig10.532.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1399bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1180668..1182066- (Ectocarpus species6 EcLAC_371)
CACAAGAGAGCAGCGTTGTTGCACTTGCGTGTATACAGACGCCCTCCTTC
TTCAGAAAAGCGCTGGTTCGTCCGCATGCTGAGTATCGTCTCTGTCACTG
TTTTTAGGTGAGACGCAGGCATCGCAGCATCGTTTTTAGGGTCATTTTTT
GGTTCATGACAAACAGCGTCATACCGTTGTACCCGGCTTCCCGGCTTGTC
ACATAGATTGTATGTAGACGGCGAGAGAGGGACGGGAGTTGACTTAGCAC
TGAGCATGCAGCTATTGTTGTAGCAGCGAAATAGTCCCTCACCCTACCCA
ATGTCGGTTACAGTAGCATTGAATCACGCCGTCCCCCCATACGCGCGTCC
TCGCAGAGCGAGAGAAAGCGAAAAAAGCGCCGTTGCGGATGAGGTTCAGT
CCTTGTTGGCATGCCGCCACGATCTCGCTGCTCCAAACATGCTCAGCAGG
GGAGGGCCGTCACGTCCACCACGCACGGGACCCACCACCCCTTGCAACAC
CAACGGGATCATCGCCACCACTGCCGCTGATGGCCTACGCGTTTTTTCCG
TCAACAAGAAGAGCGTTACATCCAGCCACAACCATCACCTCCTCCCGGAG
AAGCTCGGTCTCAAAGCCTCGCCTCGGCCACCGCCACCGGTCCGCCACGC
AGAGGACCACGCGGATGAGCAAGGCGGCACGCCCCGGCGCCGACAGCGGC
GTTGCCCTGTGGTTAGACATGCGTACCGCCGTTCTCCCCGCCGCTCAGAC
CCTCAAGACGCTATACGGCGAGCTCCGGCAGAGGGAGGAAGCGCTAGGGC
GCAGCCCGGAGGATCCGGACTGGACCTTGAGCCGCGTACCGAACCCGGTC
GGGGCGTTGCTCTACGCGGCGGAGCCAGAGGAAAGGGCGGCGGAGGAGAT
GGTGGCACTCGGCGAGAGCGCGGCGGCGCTCCCGTGCTTTCGGCTAGGCG
GCACCGACGGCACAGCAGTAGTGGTGGATGTTTCGAGCGGGCACGTTGTA
GGGGTAAGGGTTGACCCCGTCGGCGACAACGCCGCCGGGGGGGCTGCGGG
TAGTTCGGCGGCCATGGGCATTGTCGCGGCGGCACAGCAGCAGCGCGACG
GCGGCGGCCTCGTGTTTTTGCCGGGGGTGCGGCCGTCTGTCTGGGAGAGC
GGGGACATGGGCACGGTTCTCCGGATTGCCTCGAGCGCCTGCACCGGGGC
CGGGAAGACGCTCGTCGTCACGGTGAGGAGCGTGGGGCAGCTGCACGAAG
CGGCCATGGCGGCGTTTGCGGCGTCGCAGACAACGGTGCTCGGGGCGGGC
GGGACGGGCGCGGCTGAGGACGGCACTACTCCTCCGCCGATGGCTTTGCT
CATTGAGCCCATGCCCGAGCTTTGGGAAGCTGGGTTGCTCTACCTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1180668..1182066-

>mRNA_Ecto-sp6_S_contig10.532.1 ID=mRNA_Ecto-sp6_S_contig10.532.1|Name=mRNA_Ecto-sp6_S_contig10.532.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=954bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1180668..1182066- (Ectocarpus species6 EcLAC_371)
ATGAGGTTCAGTCCTTGTTGGCATGCCGCCACGATCTCGCTGCTCCAAAC
ATGCTCAGCAGGGGAGGGCCGTCACGTCCACCACGCACGGGACCCACCAC
CCCTTGCAACACCAACGGGATCATCGCCACCACTGCCGCTGATGGCCTAC
GCGTTTTTTCCGTCAACAAGAAGAGCGTTACATCCAGCCACAACCATCAC
CTCCTCCCGGAGAAGCTCGGTCTCAAAGCCTCGCCTCGGCCACCGCCACC
GGTCCGCCACGCAGAGGACCACGCGGATGAGCAAGGCGGCACGCCCCGGC
GCCGACAGCGGCGTTGCCCTGTGGTTAGACATGCGTACCGCCGTTCTCCC
CGCCGCTCAGACCCTCAAGACGCTATACGGCGAGCTCCGGCAGAGGGAGG
AAGCGCTAGGGCGCAGCCCGGAGGATCCGGACTGGACCTTGAGCCGCGTA
CCGAACCCGGTCGGGGCGTTGCTCTACGCGGCGGAGCCAGAGGAAAGGGC
GGCGGAGGAGATGGTGGCACTCGGCGAGAGCGCGGCGGCGCTCCCGTGCT
TTCGGCTAGGCGGCACCGACGGCACAGCAGTAGTGGTGGATGTTTCGAGC
GGGCACGTTGTAGGGGTAAGGGTTGACCCCGTCGGCGACAACGCCGCCGG
GGGGGCTGCGGGTAGTTCGGCGGCCATGGGCATTGTCGCGGCGGCACAGC
AGCAGCGCGACGGCGGCGGCCTCGTGTTTTTGCCGGGGGTGCGGCCGTCT
GTCTGGGAGAGCGGGGACATGGGCACGGTTCTCCGGATTGCCTCGAGCGC
CTGCACCGGGGCCGGGAAGACGCTCGTCGTCACGACAACGGTGCTCGGGG
CGGGCGGGACGGGCGCGGCTGAGGACGGCACTACTCCTCCGCCGATGGCT
TTGCTCATTGAGCCCATGCCCGAGCTTTGGGAAGCTGGGTTGCTCTACCT
TTGA
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