mRNA_Ecto-sp6_S_contig10.528.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.528.1
Unique NamemRNA_Ecto-sp6_S_contig10.528.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.528.1 vs. uniprot
Match: D8LSP3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSP3_ECTSI)

HSP 1 Score: 366 bits (940), Expect = 9.030e-123
Identity = 189/198 (95.45%), Postives = 193/198 (97.47%), Query Frame = 1 
Query:    1 MWSRPLSALLSTFLWSTQAFLVPLFATGRGKIRCRSPGYPQQQLPAEGGRPKIAAATRGQRQERTSATLAMSDNTGSCDRKGFLSDLTRNVAGAGLAAITLGPNMAVAKQAADSPVDWKAEFGSVKKATDLVLKDLKTLATDGDWEQLMEQAKGYDQSIRKGLMGNVRKKMPKEIKGDAMTYRNNITFDLIAINKASR 594
            MWSRPLSALLSTFLWSTQAFLVPLFATGRG+IRCRSPGYPQQQ PA+G RP IAAATRGQRQERTSAT AMSDNTGSCDRKGFLSDLTRNVAGAGLAAITLGPNMAVAKQAADSPVDW AEFGSVKKATDLVLKDLKTLATDGDWEQLMEQAKGYDQSIRKGLMG+VRKKMPKEIKGDAMTYRNNITFDLIAINKA+R
Sbjct:    1 MWSRPLSALLSTFLWSTQAFLVPLFATGRGEIRCRSPGYPQQQPPAQGRRPTIAAATRGQRQERTSATSAMSDNTGSCDRKGFLSDLTRNVAGAGLAAITLGPNMAVAKQAADSPVDWTAEFGSVKKATDLVLKDLKTLATDGDWEQLMEQAKGYDQSIRKGLMGDVRKKMPKEIKGDAMTYRNNITFDLIAINKAAR 198
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BLAST of mRNA_Ecto-sp6_S_contig10.528.1 vs. uniprot
Match: A0A835YZ48_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ48_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.990e-15
Identity = 48/98 (48.98%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:  319 VAKQAADSP---VDWKAEFGSVKKATDLVLKDLKTLATDGDWEQLMEQAKGYDQSIRKGLMGNVRKKMPKE---IKGDAMTYRNNITFDLIAINKASR 594
            VA  A + P   VDW AEF +VK A     + L+     GDW+ +M QA+G DQS RK LMG +RK+ PKE   +K +A+   N +TFDLIAINKA R
Sbjct:   25 VAPAAKEEPAVDVDWSAEFSAVKDAYAAAKEGLEARVAAGDWQGVMTQAQGLDQSFRKRLMGGLRKRFPKESKALKEEALLLCNAVTFDLIAINKAGR 122
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BLAST of mRNA_Ecto-sp6_S_contig10.528.1 vs. uniprot
Match: K0TE44_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TE44_THAOC)

HSP 1 Score: 55.1 bits (131), Expect = 5.070e-5
Identity = 29/71 (40.85%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:  394 VLKDLKTLATDGDWEQLMEQAKGYDQSIRKGLMGNVRKKMP-KEIKGDAMTYRNNITFDLIAINKASRYGR 603
            V+  L  L   G +E++++  K  D   RK  MG  RK +  K++KGDA++  N +TFDLI IN++SR G+
Sbjct:  112 VVSTLSNLIDGGSFEEILQYTKESDAYFRKAKMGRARKLLTDKDLKGDAVSMSNAVTFDLIGINRSSRPGK 182
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSP3_ECTSI9.030e-12395.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YZ48_9STRA2.990e-1548.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K0TE44_THAOC5.070e-540.85Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:1145362..1151018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score372.9
Seed ortholog evalue1.2e-100
Seed eggNOG ortholog2880.D8LSP3
Model size1443
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG OGs2EUUH@1,2SWXV@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_003120.1
Cds size729
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.528.1prot_Ecto-sp6_S_contig10.528.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 1145362..1150304 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348705.5969715-CDS-Ecto-sp6_S_contig10:1145361..11454901682348705.5969715-CDS-Ecto-sp6_S_contig10:1145361..1145490Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1145362..1145490 +
1682348705.6076014-CDS-Ecto-sp6_S_contig10:1146187..11463881682348705.6076014-CDS-Ecto-sp6_S_contig10:1146187..1146388Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1146188..1146388 +
1682348705.6171165-CDS-Ecto-sp6_S_contig10:1147153..11473081682348705.6171165-CDS-Ecto-sp6_S_contig10:1147153..1147308Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1147154..1147308 +
1682348705.6261637-CDS-Ecto-sp6_S_contig10:1149163..11492661682348705.6261637-CDS-Ecto-sp6_S_contig10:1149163..1149266Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1149164..1149266 +
1682348705.6351068-CDS-Ecto-sp6_S_contig10:1150163..11503041682348705.6351068-CDS-Ecto-sp6_S_contig10:1150163..1150304Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1150164..1150304 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348705.6438627-UTR-Ecto-sp6_S_contig10:1150304..11510181682348705.6438627-UTR-Ecto-sp6_S_contig10:1150304..1151018Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 1150305..1151018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.528.1

>prot_Ecto-sp6_S_contig10.528.1 ID=prot_Ecto-sp6_S_contig10.528.1|Name=mRNA_Ecto-sp6_S_contig10.528.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=243bp
MWSRPLSALLSTFLWSTQAFLVPLFATGRGKIRCRSPGYPQQQLPAEGGR
PKIAAATRGQRQERTSATLAMSDNTGSCDRKGFLSDLTRNVAGAGLAAIT
LGPNMAVAKQAADSPVDWKAEFGSVKKATDLVLKDLKTLATDGDWEQLME
QAKGYDQSIRKGLMGNVRKKMPKEIKGDAMTYRNNITFDLIAINKASRYG
RRWWVKIPGTQNRGGLRKLEIVYQGIVPCPCAHWSNGEHSRC*
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mRNA from alignment at Ecto-sp6_S_contig10:1145362..1151018+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.528.1 ID=mRNA_Ecto-sp6_S_contig10.528.1|Name=mRNA_Ecto-sp6_S_contig10.528.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5657bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1145362..1151018+ (Ectocarpus species6 EcLAC_371)
ATGTGGTCACGCCCGTTGTCTGCCCTGCTTTCCACCTTCCTTTGGTCCAC
ACAGGCCTTCCTTGTACCCCTTTTCGCGACGGGCAGAGGAAAAATTCGAT
GCCGTTCGCCAGGATATCCGCAGCAGCAGGTATGCATGCATCATGCATAC
GTGCGTGTCGGACTTGTACCGTCTTCGTCTTTCACGTTCGATGTGTGGGC
CTCGAGACTGCTGTGCGAACACAGCCAGAAGCAGCGGAGCCATTGACAGC
ACTTTGATGCGTATCTGTATACAATTTTTCTAGAAAAGTTTGTGCTTTGT
GTCGGCGCCGTAAACGATTGCTGCGCGTCATAGGAAGTGCAGGCACTGGC
TCTTTCTTCGACCGTGTAGGTGATGGATCATGTTGTTTGCAACCCCCTAC
GGTAACTCGCATGTGACACATGCAGTTGGTCACAGAAGTGCTGCTGCGCT
CGCGGGGTTGAATGGTGCCAGTGGAATAACCGAACAGGTCGATATCGTAC
AGTGGGAAGGGAGGTAACTGTTGTGAAACGCCGAAGACACCACCCACCAA
CACCAGCACAGCAAAAGTAGGAGAGGTACGTGCACACGACCTCTTCTGCT
CATTGTCTTCAAGTTATTTTACAGAGTACACAGTACCCCAGAGCAATCAC
CTAGAGCAGCAGTGACTGCGTGTAGCTAAGCTACGGTAACGTAAGGAAGC
AACTGGCACACGTTTGACTGAGTTTTTTCTGGTGTGCAGCGTATAAGACT
TGAACTCTGGAGCCACTTACAATTCATCCGGATCGGCGTAACATCTACCC
CACGTGCACCCCCCCCCGCCCGACAGCTACCGGCCGAAGGCGGTCGACCT
AAAATCGCCGCCGCGACCCGGGGACAACGACAAGAACGAACATCGGCGAC
CTTGGCCATGTCCGACAACACCGGCAGCTGCGATAGGAAGGGCTTCCTGT
CAGACCTCACGCGCAACGTGGCAGGCGCTGGCCTCGCCGCCATCACCCTG
GGCCCGAATATGGCGGTTGCAAAGCAGGTGCGAAACACGTGAATCTCGGC
CTGTGGCTGGTGACCACAGCGATCGATCAACACAGGCTGATTCAACGTTG
GCTGCAGAAGTTCGACGACGGCGCGGAAAGCATCGGAAATTGTTGCCGGA
CGGGCGGAGCGTGCAATAACGGTTTTGTGTCATAAGGCGCTCTGCAAGTA
CCCGTTGGTGTATGCATGCATGGCGGTAGCTTTGCACTCGCGGAGTAGTA
CGTCGAGTTCTCCGAACATTCAGCCGGGTAAGCGTGTTTAAAGTTCCCCC
CATCACCGACGTCGTTTTCATATCGGATCATAGCGCACGGATTAAAGACT
ACTATGTTGTTACACCCAGGAGCATGTAAATCCCCACTGGTGTTTTTTTT
CCTTGTGTTGTTTTGTCGCGTTGGACTTGCTGTTTTTTGCAGCGACGAGC
ATCACATATGTTGAACGTGATGGTTTCCGCTCTTTGGGTACGAGGAGGGG
AAAAAGGAACGGAGGCACGTAGTGCATGGGGGTGGGTGGGCTACTGCAGC
CAATGTTTGCGGTGTTGAAGGTGGAAACAAACTCTCCTTTCCCACTCGTC
CTCTGTTTCGCGCTTCCCACGTACATCACTCCGCCCCGCGAACGAAAACA
CTAGGTGCATGTGGGTGTACTTGCCCCACACTTTCATACTCCGCACAACA
ACCCCGTGTGGTTGTACGTTTGTGACGTAACCCCGATTTGTGTGACGACG
CGTCGCCCTTGACCCTCGCTCTGGGGCGGTGAAACGAGACAGGCGGCGGA
CTCTCCGGTTGACTGGAAGGCCGAGTTCGGATCCGTGAAGAAGGCCACTG
ACCTGGTGCTGAAGGACCTCAAGACCCTCGCCACGGACGGAGACTGGGAG
CAGCTGATGGAACAGGCCAAGGGCTACGACCAGTCCATTCGGAAAGGGTG
AGGGGTTCTCGAGCGCGCGCATGTGAATGGACGGGGGGACTGGCTGTGCA
AAGAAAGTTAGGTTTAGTACGAAAAGGACCAGACAGGGGGCACGCAGACC
CTAACCCTGACCCCCAACTTGCCGATTCTATGCTTTTTCCATTACATTTG
CTTCGCGTAGAAAAACCTGCGTAGACTACTGGGGCGGGAGTTTGTTTAAC
AAGGTGCGAAGCGCCCACAGAGGGGGCTGTTGGGTAGTGGGAGCTAGTCG
TCAGAGGCGCGATGACAAAGGCTGACTCGCGACCTTGTGGTTAACAAGTG
GAAGAGGGCAGGCGGCCCCACGCATGGCAGCACGGGGATCGCCCTTCTAC
ATGCAGAACCCCCGGGATCTACGCGGACCCGTATCTAGTGCTGAGTACAT
CAAGCAGAGGCGGCGGGCCCCCGGGCGTTCTCTCACACGACGGAGCGGGC
CTGAGCTCGCCCGCGCTTGGGTGTCCGAAAGAGGAAGACGTCGAAAACGT
GCCGCGAGGCAGCAGGTGGTTCCCACAGTGCTAACGGATTTTCGGGGGAG
GCGGCGTGCTCGTTAGCCCGTCGCCCTCCCTCAGGAGGAGAGGAGGATGG
GGAAGGCCGAATGACGGGAACGAATCACTTGCCCGGAAAGTGTAGAACTT
TTTTGGTGGGGCAGCGGAATGGCTAGGGGTTAGCTGGCGTTACTTTTTTT
TTTCCGGGGGGGGAGAGGGGAAAACCACCTCTCGAGTGAGTTGGGGGGAA
AGAGGAGGAAACACGCCCGTGTCATCCGTGTGGACATGACGCACGAATGC
CCTCGGAAACCACTGAGCGTTGTGGCCCAAGCCTCCTGAAGAATGGCGCC
GCTCCGTTCTACTTCGAATTTCGCCATTCAAGCTGCTACTGCGCTGGGCA
CAAGACTCCTTGATAACGAGTCCTGCTTCAGTGTTGAGTGCCCAAGGACT
CTACACTTGGGCACAGCCTAGATTTTCTTTTGGAAACGTTTGGCCATACC
TCCTCGCTGGTATGGTTGCGTCAGCGATTCGTTCATTTGTAGGCTCCCTC
CTCATACGTTCGTCGGGCGTGTCGTTTCCTTTCTGCGGGTTCTTTGCAAC
GGTGTGTGTTATTGTGTGAAGGTGTTTTCATGCTCCACTGCACGGTTGAT
TGAAGAACGCTCAAGTTCTTTTCTCACCCCCAGGAACGGCTTCTTCGCCC
CCCAGCTGGCTACTGAAGCTTGCAAAGCTTCGCCACCACGCTTGCAGAGC
ACCCTCTCCTGGTGGTCCTCACCCGACGCGCTGCCTGCTTGTCGTTGACG
TGCGGCAACGCTTCCGTCCGAAGTAGGCCCCTTCAACGCCCAATAAGAAA
CCACCATCACCGTCATCCTTACTAGCTGATGGGGCCGACGTCGCTGCTTA
CTCGTTGATGGAGCCGACGTCCGCAAAAGAATATGTTCCGCCCGCCAAGC
ACGCTGCAAGGGGTGCACACCCTTCGGCTCTCGCGAATTCGCCGGAGGCC
CGACAAGCCGCTGGCTTGTTGGGACCCGAACCGATGACGCACCCCCCTCA
CACAAGCGTTCTTTGCGGGCTGATGGGGAACGTGCGTAAGAAGATGGCTT
GTTGGACCTGAACCGGCAACACGCCCCGCCCCATTTCGATAGGATAGATA
GATAGGTTAGGGGAGACATTTTTGAGCCACCTTTGGCAAAGTAGGAAGGA
ACGATTGGCCATCGGGGATCGATCGGTCCTGTGGGAACGGTGCTCCGTCC
TCTCGAGGTCGCGTGGCCAATGGTCTAACCGCTAAGGCATGCAAAACATA
AGAGTACGCCCCCCCCGTCCCCATTTCTCTTTCGCGCGATCGTTCTTTGC
AGGCTGATGGGAAACGTGCGCAAGAAGATGCCGAAGGAGATCAAGGGCGA
CGCTATGACCTACCGAAACAACATCACATTCGACCTCATCGCCATCAACA
AGGCGGCCAGGGTGGAGGACAGACCGAGAACTTTCGAGGTGAGGACATAA
CGCAGAGATGGCACTCCCCTATTGACCGAGCTCGATTGCTCCGGGACCAA
GCCCGTGCCAACACGAAAAATGGTGGTTTTGGAAACATCCTCATCGAGGG
CTTTCCGTGAACGTGTCGGGGCTCTTTCCGCACCGACGTAGTTGTGGAGC
AAACGGGCTTTGAAAGCCAGTCTAGGCGGTGTGCCATCTCTTCCCCTATT
GCGGTATACACGTGCCAACACGAAGACTCGTCAATACTCGGTGTCTCAGT
TTCGATCTCAAGATGGGGGAGTGGAAATGCCGAACTTTTTGGTCTTTCGT
CCTTGAGATATTATTTTTTCCGTGGTATTGTGTTTGGAAGGAGCCGGCCA
AATCATGCGAACGTGCGTTCTACTTGCCCGTCATGCCGCAATTGATGGCG
CTTGTCACACACCCCTACCAGCTTTTGTCTAGGGCTGTCGACCTGCACCG
TCCTACCCTGACCTTCGTAACCATGCTGTCCCTCGATGGCACACCCGCCG
TAGCCCATGCGCCAGCTTTGGCGATACAGCTTGTCGAGCTGATGCACTTG
GACGTTGGACGTAAAACTTGGAAGTGACTCCCTACCCTCTGCCCCGGACT
GGTCTCAGTGCTCCCGTTGGCATCTGTCCCTATTTTGCGTCCTTCTCGGT
CGTTTTGTTGCTGCACGTCTTGTTTCGCCCCGCGCTCCGAAAAAAACGAA
GGTTTTGGACATTTTGGAGGCGGACATCAATGGCTTCCTCAACTTGGAAA
AGCGGATATAGACTAATTGCCGTTCTATCGTCGTGGGCGTCTGTCTCAGC
GGATATTTTTTCTTCTGCACTGTATCCCCCCCTCTGTTTCTGTTCACGGG
AGAGTCGATACGGTAGACGCTGGTGGGTGAAAATCCCGGGGACACAAAAT
CGGGGGGGACTCCGGAAGCTAGAAATCGTTTATCAGGGTATCGTCCCGTG
TCCGTGTGCTCATTGGTCGAATGGCGAGCACAGTCGGTGCTAGAAACAAA
CGGGGTTTTCGCTGTTCGCAGCGGTGCAGGTGTACGCGCCCTTAGCTATG
TTTCGAGGTTGGTGTTCCCAACTTTGACGGCGGCGCTTAGCGTTGTTTGC
CGGATTGCGCCACCCATCCGTGCGCTCCCATCGTGAGGTTTCTGGTGCGC
AAGACATAGATCAGCCGTGGCCAAAGGTGACGTTGCGTCTATCTACGAAT
GGATGCCCTTAGGCGGCTAGATGGTATTTGCGGGGTTCTTTTTATCCCCC
ACGAGGATGACGAAGCCCCGCCACACTCTCGGCGTTGATTTTCTGCTTAA
AGGTGTAGTAGGTCTTGCTCCTCCCCTTCCTTTTGGTGGGGTACCGATAA
GGCGGCTTCGCGACCAGAACTCAGGGTCTGCAACAGAGCTGCTGGACAAA
ATGCTATGCTTCCGCTACCGGCGGCATTCTGGCGTTTGAACCTCAGCTCT
GACGGTGTCATACGAGACTTTGTTGTCCTTGATCTTCTTTTTGGTGTGGC
GAGTTAAGGCCGTGACCATTGAGGGTTTCGAAGCTTGGTTGGTCCTGTAG
TGGCGCCGTTAGCCAGAGCAGACAAAAAACCGCGCCCGCCCGTCTTACGT
GAGGAAAATATGTCTACCATATCCAATGAAATCACGGCAGCCCAGCTTCG
TTTCCCCTCCCGTCCGACATGCTTACTCCTGGCGCGAAATTCCCGCAGTG
TCGGATG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1145362..1151018+

>mRNA_Ecto-sp6_S_contig10.528.1 ID=mRNA_Ecto-sp6_S_contig10.528.1|Name=mRNA_Ecto-sp6_S_contig10.528.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=729bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1145362..1151018+ (Ectocarpus species6 EcLAC_371)
ATGTGGTCACGCCCGTTGTCTGCCCTGCTTTCCACCTTCCTTTGGTCCAC
ACAGGCCTTCCTTGTACCCCTTTTCGCGACGGGCAGAGGAAAAATTCGAT
GCCGTTCGCCAGGATATCCGCAGCAGCAGCTACCGGCCGAAGGCGGTCGA
CCTAAAATCGCCGCCGCGACCCGGGGACAACGACAAGAACGAACATCGGC
GACCTTGGCCATGTCCGACAACACCGGCAGCTGCGATAGGAAGGGCTTCC
TGTCAGACCTCACGCGCAACGTGGCAGGCGCTGGCCTCGCCGCCATCACC
CTGGGCCCGAATATGGCGGTTGCAAAGCAGGCGGCGGACTCTCCGGTTGA
CTGGAAGGCCGAGTTCGGATCCGTGAAGAAGGCCACTGACCTGGTGCTGA
AGGACCTCAAGACCCTCGCCACGGACGGAGACTGGGAGCAGCTGATGGAA
CAGGCCAAGGGCTACGACCAGTCCATTCGGAAAGGGCTGATGGGAAACGT
GCGCAAGAAGATGCCGAAGGAGATCAAGGGCGACGCTATGACCTACCGAA
ACAACATCACATTCGACCTCATCGCCATCAACAAGGCGAGTCGATACGGT
AGACGCTGGTGGGTGAAAATCCCGGGGACACAAAATCGGGGGGGACTCCG
GAAGCTAGAAATCGTTTATCAGGGTATCGTCCCGTGTCCGTGTGCTCATT
GGTCGAATGGCGAGCACAGTCGGTGCTAG
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