mRNA_Ecto-sp6_S_contig10.522.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.522.1
Unique NamemRNA_Ecto-sp6_S_contig10.522.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.522.1 vs. uniprot
Match: D8LSP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSP8_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 3.110e-21
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:    2 VVKYWVIFLIASDAGLVTWTMRVAAEFFSKVRRRSPRCWRKPAQ*VQGHR*VQGSRCRVSVRGKLNHRRS 211
            VVKYWVIFLIASDAGLVTWTMRVAAEFFSKVRRRSPRCWRK               C VS R  L+ R+S
Sbjct:    2 VVKYWVIFLIASDAGLVTWTMRVAAEFFSKVRRRSPRCWRKT--------------CSVSSRPPLSTRKS 57
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSP8_ECTSI3.110e-2168.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:1097134..1098956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size218
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_003060.1
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348692.9068432-CDS-Ecto-sp6_S_contig10:1097133..10971961682348692.9068432-CDS-Ecto-sp6_S_contig10:1097133..1097196Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1097134..1097196 +
1682348692.9165738-CDS-Ecto-sp6_S_contig10:1098803..10989561682348692.9165738-CDS-Ecto-sp6_S_contig10:1098803..1098956Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1098804..1098956 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.522.1prot_Ecto-sp6_S_contig10.522.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 1097134..1098956 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.522.1

>prot_Ecto-sp6_S_contig10.522.1 ID=prot_Ecto-sp6_S_contig10.522.1|Name=mRNA_Ecto-sp6_S_contig10.522.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=72bp
SGEVLGHFSHRLRRRAGNVDNEGRSGVFLQGQKEIAKMLAETCSVSSRPP
LSTRKSLSSFCSRQTEPQAKL*
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mRNA from alignment at Ecto-sp6_S_contig10:1097134..1098956+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.522.1 ID=mRNA_Ecto-sp6_S_contig10.522.1|Name=mRNA_Ecto-sp6_S_contig10.522.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1823bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1097134..1098956+ (Ectocarpus species6 EcLAC_371)
AGTGGTGAAGTACTGGGTCATTTTTCTCATCGCCTCCGACGCCGGGCTGG
TAACGTGGACAATGTGAGAACCTTGAACGAGATAAGCTGTATTGTAGGGA
AGGCGCCGTCGAAAATACTGCAGTGTGATTGTGTTTCACAGAATAAGATA
ACCCCGAAGTCGTACACACCCGTTTCTCGCAGCGGCTGTTAAACACATCT
CTCTATGCGCCCCAAACTTTTTTCGCATCTGCCCAATAGCGAACGCATGT
CGCTGTTTCGTCTTGTTTGGCCCCTCTCTCCCTTTCTTGCACAGCAGTCT
AGACAAAACGGGCGTCGGGGTAAGACACCACCATGCGGATGCCTCGTTCG
GGTCCCACATACTATCTGAAGCTCACTCGCCTCCCGCCGGCAACGCATCT
CGGGTACATGCAGTCACTGTATATTGCTGTCTGCGTCGAAGAACGCGCTA
CACAACTTACATCCTCGCACCGTCGTCTTGTTGCACTGCACACGCGCACT
GATTCACAACGTCCAGCAACGTCAAGCCCGTGCGGGGTTTTCTCAAGCAG
CACAATATCAGTTGGTGGAAATTTTTGGCACGAACAGGCCTCAACGCAAA
CACGTCCCGTGTGGCCTGCGCTTCTCAAGGACACCTGGGAACTACAGCGA
TGGCACTTAACAGCCCGCGAAGCGGTGCCACTTCCATGGCTGAGAGCCCG
CTGGCTACCATAATGGGATTAATTCCTCTGAAGCAGGCCTTCGGGGAATT
TTGCCAGAGGGCTCTATGCAGTGAGGTACACTATTCAGACGCGGAAAGTT
TGCGTGCTACATTCTCAAATAGTGCAGATAACTCGAACTTTGTTTTTTTT
GCTTGGTTAGATGGACTCGATGTTTCGGATACACATACTGTTGCGTTTGA
TATGACTTGGTTGGAACGTTGTGCTCGTCGTGCCGACCCTCTGCAGTTCA
CAAGTCTAATACGTACTTGGTGCTTTCGAGGTGAAAACGTTTCCCGCTCG
AGTGTGCATCTTTTCTGGAAACGACAACACCCCTTGGGCCACATCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTCTCTCTCTCCTG
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGCCGGTCTGCTTTCGCCCT
GGTACTACCCCCAGTCGTTCCAGTTCCTGATTGACGCGTCCGAGTTTCAG
AGCTCGGTACATGCCGCTCAACGTGGCCACGAGGATGAAGGCTGCTTTGA
AGAATTTCTCGCCATCGTCAACGAATACATCAAGGACAACTCCAACTCCG
AAATCAACATAGACGGCCGTACCAAAAAGGAAATACTAAGGTTCCAGGAG
CGCTCGTCGTATGATTCCCTCGACGTGGTAAGGGAGGGAAGAGCGAGCTG
TGCTGCTGGCAAATTCAGGAGTGACTTTGGTTCGATATCGTTGGGCGTTT
ATCGTGTGCTTTGAGATGATGCGGTTGACGGTGGACCACTTCGAGCATAT
CACGTGCACCACAAAGAAAGAGGGCGCACTGGGAATTCAATGTAGTGTGA
CTACCCACAAGAAGTTGTGTTTATCAGCAACTTTGTTGATATCGCATTCA
CTGCATACAACGAAGAACTCGATCACGTCCAACGCTTCTCACTTGTGTAG
TTGCTTTCCCGTGTCGTCAGGAGGGTCGCAGCGGAGTTTTTCTCCAAGGT
CAGAAGGAGATCGCCAAGATGTTGGCGGAAACCTGCTCAGTAAGTTCAAG
GCCACCGCTGAGTACAAGGAAGTCGCTGTCGAGTTTCTGTTCGAGGCAAA
CTGAACCACAGGCGAAGTTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1097134..1098956+

>mRNA_Ecto-sp6_S_contig10.522.1 ID=mRNA_Ecto-sp6_S_contig10.522.1|Name=mRNA_Ecto-sp6_S_contig10.522.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1097134..1098956+ (Ectocarpus species6 EcLAC_371)
AGTGGTGAAGTACTGGGTCATTTTTCTCATCGCCTCCGACGCCGGGCTGG
TAACGTGGACAATGAGGGTCGCAGCGGAGTTTTTCTCCAAGGTCAGAAGG
AGATCGCCAAGATGTTGGCGGAAACCTGCTCAGTAAGTTCAAGGCCACCG
CTGAGTACAAGGAAGTCGCTGTCGAGTTTCTGTTCGAGGCAAACTGAACC
ACAGGCGAAGTTGTGA
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