mRNA_Ecto-sp6_S_contig10.520.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.520.1
Unique NamemRNA_Ecto-sp6_S_contig10.520.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.520.1 vs. uniprot
Match: A0A6H5KES1_9PHAE (Epimerase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KES1_9PHAE)

HSP 1 Score: 834 bits (2155), Expect = 1.280e-296
Identity = 427/451 (94.68%), Postives = 431/451 (95.57%), Query Frame = 1 
Query:    1 MARTLRVVLCALSLCANAEGFLSTSSSFAGKPSAVGAATAXXXXXXSRAQIAAGNKRRQRVTAADAGSVVARGASSSATVSAGGLCMSEGSAKTIVVLGGDGFCGWPTCLHLSDAGHDVIMVDNLSRRRIDLELGCESLTPIQSPQTRVKTWKEVTGREIKYVNIDVAKEYELLLKLFKEHKPDTVIHFAEQRAAPYSQKGSREKRYTVDNNTGGTHNMLVAIVESGLDIHVCHLGTMGVYGYGNSGGEIPEGYIDVTLPGNRQQKILHPAYPGSVYHTTKCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTVRDERLVNRFDYDSDYGTVLNRFLMQAALDIPMTVYGTGGQTRGFIHVTDTAKCLEAAVVNPPAANGPVEIFNQVAETHRVRDLAQMIADKTGTKIDFISNPRNEAAENELEVKNDKFGNLGVDFKSLDGTLLEEV 1353
            MARTL VVLCALSLCAN EGFLSTSSSF G+PSAVGA         SRAQIA   +R QRV+A+DA SVVARGASSSA VSAGGLCMSEGSAKTIVVLGGDGFCGWPTCLHLSDAGHDVIMVDNLSRRRIDLELGCESLTPIQSPQTRVKTWKEVTGREIKYVNIDVAKEYELLLKLFKEHKPDTVIHFAEQRAAPYSQKGSREKRYTVDNNT GTHNMLVAIVESGLDIHVCHLGTMGVYGYGNSGGEIPEGYIDVTLPGNRQQKILHPAYPGSVYHTTKCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTVRDERLVNRFDYDSDYGTVLNRFLMQAALDIPMTVYGTGGQTRGFIHVTDTAKCLEAAVVNPP ANGPVEIFNQVAETHRVRDLAQMIADKTGTKIDFISNPRNEAAENELEVKNDKFGNLGVDFKSLDGTLLEEV
Sbjct:    1 MARTLHVVLCALSLCANTEGFLSTSSSFTGRPSAVGATAGAAAG--SRAQIA---RRPQRVSASDAASVVARGASSSAAVSAGGLCMSEGSAKTIVVLGGDGFCGWPTCLHLSDAGHDVIMVDNLSRRRIDLELGCESLTPIQSPQTRVKTWKEVTGREIKYVNIDVAKEYELLLKLFKEHKPDTVIHFAEQRAAPYSQKGSREKRYTVDNNTVGTHNMLVAIVESGLDIHVCHLGTMGVYGYGNSGGEIPEGYIDVTLPGNRQQKILHPAYPGSVYHTTKCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTVRDERLVNRFDYDSDYGTVLNRFLMQAALDIPMTVYGTGGQTRGFIHVTDTAKCLEAAVVNPPGANGPVEIFNQVAETHRVRDLAQMIADKTGTKIDFISNPRNEAAENELEVKNDKFGNLGVDFKSLDGTLLEEV 446
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.520.1 vs. uniprot
Match: A0A835Z939_9STRA (UDP-sulfoquinovose synthase plastid n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z939_9STRA)

HSP 1 Score: 593 bits (1529), Expect = 1.620e-202
Identity = 287/367 (78.20%), Postives = 313/367 (85.29%), Query Frame = 1 
Query:  253 LCMSEGSAKTIVVLGGDGFCGWPTCLHLSDAGHDVIMVDNLSRRRIDLELGCESLTPIQSPQTRVKTWKEVTGREIKYVNIDVAKEYELLLKLFKEHKPDTVIHFAEQRAAPYSQKGSREKRYTVDNNTGGTHNMLVAIVESGLDIHVCHLGTMGVYGYGNSGGEIPEGYIDVTLPGNRQQKILHPAYPGSVYHTTKCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTVRDERLVNRFDYDSDYGTVLNRFLMQAALDIPMTVYGTGGQTRGFIHVTDTAKCLEAAVVNPPAANGPVEIFNQVAETHRVRDLAQMIADKTGTKIDFISNPRNEAAENELEVKNDKFGNLGVDFKSLDGTLLEEV 1353
            +  + GSAK  +VLGGDGFCGWPT LHLSDAGH+V++VDNLSRR IDLELGCESLTPIQ+ QTR+K W++V+GR+I +  IDVAKEY+LLL L K  KPD +IHFAEQRAAPYSQKGSREKRYTVDNN GGTHN+ VAIVESGLDIHV HLGTMGVYGYGNSGG+IPEGYIDV LPGNR+QKILHPAYPGSVYHTTKCLDALLFQFY KNDGLR+TDLHQGIVWGTNT QTVRDERL+NRFDYDSDYGTVLNRFLMQAAL IPMTVYGTGGQTR FIHV+DTA+CLEAAV NPPA    VEIFNQ                      D+ISNPRNEAAENEL+V+NDKFGNLGVDFKSLD  LL+EV
Sbjct:   43 MASANGSAKKALVLGGDGFCGWPTALHLSDAGHEVVIVDNLSRRNIDLELGCESLTPIQTMQTRLKVWEQVSGRKISWEKIDVAKEYDLLLALIKREKPDVIIHFAEQRAAPYSQKGSREKRYTVDNNIGGTHNLCVAIVESGLDIHVVHLGTMGVYGYGNSGGQIPEGYIDVILPGNREQKILHPAYPGSVYHTTKCLDALLFQFYNKNDGLRVTDLHQGIVWGTNTAQTVRDERLINRFDYDSDYGTVLNRFLMQAALGIPMTVYGTGGQTRAFIHVSDTARCLEAAVNNPPATGSGVEIFNQXXXXXXXXXXXXXXXXXXXXXXDYISNPRNEAAENELDVRNDKFGNLGVDFKSLDENLLDEV 409
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.520.1 vs. uniprot
Match: A0A6V1JXM6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1JXM6_HETAK)

HSP 1 Score: 589 bits (1518), Expect = 6.880e-201
Identity = 280/365 (76.71%), Postives = 324/365 (88.77%), Query Frame = 1 
Query:  259 MSEGSAKTIVVLGGDGFCGWPTCLHLSDAGHDVIMVDNLSRRRIDLELGCESLTPIQSPQTRVKTWKEVTGREIKYVNIDVAKEYELLLKLFKEHKPDTVIHFAEQRAAPYSQKGSREKRYTVDNNTGGTHNMLVAIVESGLDIHVCHLGTMGVYGYGNSGGEIPEGYIDVTLPGNRQQKILHPAYPGSVYHTTKCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTVRDERLVNRFDYDSDYGTVLNRFLMQAALDIPMTVYGTGGQTRGFIHVTDTAKCLEAAVVNPPAANGPVEIFNQVAETHRVRDLAQMIADKTGTKIDFISNPRNEAAENELEVKNDKFGNLGVDFKSLDGTLLEEV 1353
            M++ + K IVVLGGDGFCGWPT L+LS+ GHDVI+VDNLSRR ID ELG +SLTPI SPQ RVKTW+ V+GR+I+++N+DVAK+Y+LL++LFK+ KPD+VIHFAEQRAAPYS KGS++KRYTVDNN GGT+N+  AI+ES +DIHV HLGTMGVYGYGNSGGEIPEGYIDV LPG R++ ILHPAYPGSVYH TKCLDA++FQFY KNDGL++TDLHQGIVWGTNTPQT++DERLVNRFDYD DYGTVLNRFLMQAALDIP+TVYGTGGQTR FIHVTDTA+C+EAAV NPPAA   VEIFNQVAET RVRDLA MIA+KTG  I+F++NPRNEAAENELEV N KF  LGV+ K+LD  L +EV
Sbjct:   43 MADATPKKIVVLGGDGFCGWPTSLYLSEQGHDVIIVDNLSRRNIDNELGAQSLTPIVSPQERVKTWEAVSGRKIEFINLDVAKDYDLLVQLFKQEKPDSVIHFAEQRAAPYSMKGSKQKRYTVDNNLGGTNNVACAIIESEVDIHVVHLGTMGVYGYGNSGGEIPEGYIDVILPGGRERNILHPAYPGSVYHATKCLDAIMFQFYNKNDGLKVTDLHQGIVWGTNTPQTIKDERLVNRFDYDGDYGTVLNRFLMQAALDIPLTVYGTGGQTRAFIHVTDTARCIEAAVNNPPAAGDRVEIFNQVAETCRVRDLANMIAEKTGVDINFVNNPRNEAAENELEVVNQKFKMLGVEPKTLDAGLFDEV 407
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.520.1 vs. uniprot
Match: A0A7S2RTH5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RTH5_9STRA)

HSP 1 Score: 573 bits (1476), Expect = 1.890e-194
Identity = 266/370 (71.89%), Postives = 313/370 (84.59%), Query Frame = 1 
Query:  244 AGGLCMSEGSAKTIVVLGGDGFCGWPTCLHLSDAGHDVIMVDNLSRRRIDLELGCESLTPIQSPQTRVKTWKEVTGREIKYVNIDVAKEYELLLKLFKEHKPDTVIHFAEQRAAPYSQKGSREKRYTVDNNTGGTHNMLVAIVESGLDIHVCHLGTMGVYGYGNSGGEIPEGYIDVTLPGNRQQKILHPAYPGSVYHTTKCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTVRDERLVNRFDYDSDYGTVLNRFLMQAALDIPMTVYGTGGQTRGFIHVTDTAKCLEAAVVNPPAANGPVEIFNQVAETHRVRDLAQMIADKTGTKIDFISNPRNEAAENELEVKNDKFGNLGVDFKSLDGTLLEEV 1353
            A  + M+  S K ++VLGGDGFCGWPT LHLSD GHDV++VDNLSRR ID ELGC+SLTPIQ+P+ RV  W+EV+G+ I + NIDVA+EY+ LL L +  KPDT++HFAEQRAAPYS +  + KRYT+DNN  GTHN+L A+VES LDIHV HLGTMGVYGYG SGGEIPEGYIDV LPG R+ KILHPAYPGS+YH TKCLDALLFQFY KND +R+TDLHQGIVWGTNTPQT+RD+RLVNRFDYD DYGTVLNRFLMQ+ALDIP+TVYGTGGQTR FIH+TDTAKC++ A+ NPP A  PVEI NQVAET RVRD+A+M+A KTG K+ +++NPRNEAAENEL+V N+KF +LG+D  +LD  L EEV
Sbjct:   43 AAAVSMAAESPKKVLVLGGDGFCGWPTALHLSDEGHDVVIVDNLSRRNIDTELGCDSLTPIQTPEIRVDAWEEVSGKRIGFHNIDVAEEYQELLNLIRAEKPDTIVHFAEQRAAPYSMRTPKSKRYTIDNNLSGTHNLLCAVVESELDIHVVHLGTMGVYGYGTSGGEIPEGYIDVILPGGRESKILHPAYPGSIYHATKCLDALLFQFYNKNDQMRVTDLHQGIVWGTNTPQTIRDDRLVNRFDYDGDYGTVLNRFLMQSALDIPLTVYGTGGQTRAFIHITDTAKCIQLAIENPPDAGAPVEILNQVAETRRVRDIAEMVASKTGAKLQYVNNPRNEAAENELDVSNNKFRSLGLDPITLDERLFEEV 412
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.520.1 vs. uniprot
Match: A0A8J5XDE6_DIALT (Epimerase domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XDE6_DIALT)

HSP 1 Score: 568 bits (1463), Expect = 2.200e-192
Identity = 264/367 (71.93%), Postives = 311/367 (84.74%), Query Frame = 1 
Query:  259 MSEGSAKTIVVLGGDGFCGWPTCLHLSDAGHDVIMVDNLSRRRIDLELGCESLTPIQSPQTRVKTWKEVTGREIKYVNIDVAKEYELLLKLFKEHKPDTVIHFAEQRAAPYSQKGSREKRYTVDNNTGGTHNMLVAIVESGLDIHVCHLGTMGVYGYGNSGGEIPEGYIDVTLPGNRQQKILHPAYPGSVYHTTKCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTVRDERLVNRFDYDSDYGTVLNRFLMQAALDIPMTVYGTGGQTRGFIHVTDTAKCLEAAVVNPPAANGPVEIFNQVAETHRVRDLAQMIADKTGTKIDFISNPRNEAAENELEVKNDKFGNLGVDFKSLDGT--LLEEV 1353
            +S+   K ++VLGGDGFCGWPT LHLSD GH+VI+VDNLSRR ID ELGC SLTPI +PQ RV TW ++TG+EI+++N+D+A +Y+L L+L K+ KPD+++HFAEQRAAPYS K S+ KRYT++NN G THN+L A+VESGLDIH+ HLGTMGVYGYGNSGGEIPEGYIDV LPG R+++ILHPAYPGS+YHTTKCLDALLFQFY +ND LR+TDLHQGIVWGTNTPQT RDERLVNRFDYD DYGTVLNRFLMQ AL IP+TVYGTGGQTR  IH+TDT+KC+E A+ NPP A  PVEI NQVAET RVRDLAQ+++ KTGT + F++NPRNEAAEN L+V N KF  LG+D   LD    LLEEV
Sbjct:   60 VSDNRPKKVLVLGGDGFCGWPTSLHLSDKGHEVIIVDNLSRRNIDTELGCSSLTPIATPQVRVDTWNKMTGKEIRFINLDLAADYDLFLQLLKQEKPDSIVHFAEQRAAPYSMKSSKHKRYTINNNVGATHNVLAAVVESGLDIHLVHLGTMGVYGYGNSGGEIPEGYIDVVLPGGREKRILHPAYPGSIYHTTKCLDALLFQFYVQNDQLRVTDLHQGIVWGTNTPQTARDERLVNRFDYDGDYGTVLNRFLMQGALGIPLTVYGTGGQTRALIHITDTSKCIELAINNPPKAGSPVEILNQVAETARVRDLAQLVSQKTGTPLQFVTNPRNEAAENPLQVSNQKFKLLGLDPILLDSAEGLLEEV 426
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.520.1 vs. uniprot
Match: A0A7S3V8N9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V8N9_9STRA)

HSP 1 Score: 569 bits (1466), Expect = 2.870e-192
Identity = 264/371 (71.16%), Postives = 313/371 (84.37%), Query Frame = 1 
Query:  253 LCMSEGSA----KTIVVLGGDGFCGWPTCLHLSDAGHDVIMVDNLSRRRIDLELGCESLTPIQSPQTRVKTWKEVTGREIKYVNIDVAKEYELLLKLFKEHKPDTVIHFAEQRAAPYSQKGSREKRYTVDNNTGGTHNMLVAIVESGLDIHVCHLGTMGVYGYGNSGGEIPEGYIDVTLPGNRQQKILHPAYPGSVYHTTKCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTVRDERLVNRFDYDSDYGTVLNRFLMQAALDIPMTVYGTGGQTRGFIHVTDTAKCLEAAVVNPPAANGPVEIFNQVAETHRVRDLAQMIADKTGTKIDFISNPRNEAAENELEVKNDKFGNLGVDFKSLDGTLLEEV 1353
            L  SEG A    KTI++LGGDGFCGWPTCLHLSDAGHDV+MVDNLSRR ID ELGC SLTPIQSP+ RV+ WKEV+G++IK+VN+DVAKEY+LL++L K+ +PD V+HFAEQRAAPYS K S+ KRYT+DNN  G++N+  AI+++  D H+ HLGTMGVYGYG SGGEIPEGYIDVTLPG R+  ILHPAYPGSVYH TKCLDA+++QFY KND LR+TDLHQGIVWGTNTPQT++DERL+NRFDYD DYGTVLNRFLMQ A+ +P+TVYGTGGQTRGFIHVTDTAKC+E AV NPPA    VEIFNQ+AET RVRD+A ++A++TG ++  I NPR EAAENEL+V N KF NLG++  +LD  L  EV
Sbjct:   85 LKASEGDADFEKKTIIILGGDGFCGWPTCLHLSDAGHDVVMVDNLSRRNIDTELGCSSLTPIQSPEVRVEAWKEVSGKDIKFVNLDVAKEYDLLVQLIKDEQPDAVVHFAEQRAAPYSMKNSKTKRYTIDNNVSGSNNLCCAIIDAETDTHIVHLGTMGVYGYGTSGGEIPEGYIDVTLPGGREANILHPAYPGSVYHATKCLDAIMWQFYNKNDDLRITDLHQGIVWGTNTPQTIKDERLINRFDYDGDYGTVLNRFLMQGAMGVPLTVYGTGGQTRGFIHVTDTAKCIEIAVNNPPAKGDRVEIFNQIAETRRVRDVASLVAEQTGVEMKMIPNPRQEAAENELDVSNAKFCNLGLEPTTLDAGLFSEV 455
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.520.1 vs. uniprot
Match: A0A4D9CYN6_9STRA (Epimerase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYN6_9STRA)

HSP 1 Score: 564 bits (1453), Expect = 7.410e-192
Identity = 265/369 (71.82%), Postives = 315/369 (85.37%), Query Frame = 1 
Query:  253 LCMSEGSAKTIVVLGGDGFCGWPTCLHLSDAGHDVIMVDNLSRRRIDLELGCESLTPIQSPQTRVKTWKEVTGREIKYVNIDVAKEYELLLKLFKEHKPDTVIHFAEQRAAPYSQKGSREKRYTVDNNTGGTHNMLVAIVESGLDIHVCHLGTMGVYGYGNSGGEIPEGYIDVTLPGNRQQKILHPAYPGSVYHTTKCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTVRDERLVNRFDYDSDYGTVLNRFLMQAALDIPMTVYGTGGQTRGFIHVTDTAKCLEAAVVNPPAANGPVEIFNQVAETHRVRDLAQMIADKTGTKIDFISNPRNEAAENELEVKNDKFGNLGVDFKSLDGTL--LEEV 1353
            +  +E   K IVVLGGDGFCGWPT L+LS+ GHDVI+VDNLSRR ID ELGC SLTPI+SP+TRVK W++V+GR +++VN+DVA++Y+ L++LF   KPD V+HFAEQRAAPYSQKG+++KRYTVDNN  GT+N+LVA+VESGLDIHV HLGTMGVYGYG SGGEIPEGYIDV LPG R   ILHPAYPGSVYHTTKCLDALLFQFY KNDG+R+TDLHQGIVWGTNTPQT++DERL+NRFDYD DYGTVLNRF+MQ AL +P+TVYGTGGQTRGFIH+TDTA+C+E AV NPP A   V+IFNQ+AET RV DLA+++A+KTG  I+++ NPR E+AENELEV N KF  LG+D   LD  L  ++EV
Sbjct:    1 MVAAESKPKKIVVLGGDGFCGWPTSLYLSEKGHDVIIVDNLSRRNIDNELGCSSLTPIESPETRVKAWEKVSGRTMRFVNLDVARDYQELVQLFVAEKPDAVVHFAEQRAAPYSQKGAKQKRYTVDNNVSGTNNLLVAVVESGLDIHVVHLGTMGVYGYGTSGGEIPEGYIDVILPGGRSSSILHPAYPGSVYHTTKCLDALLFQFYNKNDGIRVTDLHQGIVWGTNTPQTIKDERLINRFDYDGDYGTVLNRFIMQGALGVPLTVYGTGGQTRGFIHITDTARCIEIAVSNPPQAGEKVQIFNQIAETLRVGDLAKLVAEKTGVDINYLKNPRLESAENELEVANRKFRGLGLDPILLDSNLGLVDEV 369
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.520.1 vs. uniprot
Match: A0A7S4N1Z5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N1Z5_9STRA)

HSP 1 Score: 562 bits (1448), Expect = 3.340e-190
Identity = 259/365 (70.96%), Postives = 313/365 (85.75%), Query Frame = 1 
Query:  265 EGSA--KTIVVLGGDGFCGWPTCLHLSDAGHDVIMVDNLSRRRIDLELGCESLTPIQSPQTRVKTWKEVTGREIKYVNIDVAKEYELLLKLFKEHKPDTVIHFAEQRAAPYSQKGSREKRYTVDNNTGGTHNMLVAIVESGLDIHVCHLGTMGVYGYGNSGGEIPEGYIDVTLPGNRQQKILHPAYPGSVYHTTKCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTVRDERLVNRFDYDSDYGTVLNRFLMQAALDIPMTVYGTGGQTRGFIHVTDTAKCLEAAVVNPPAANGPVEIFNQVAETHRVRDLAQMIADKTGTKIDFISNPRNEAAENELEVKNDKFGNLGVDFKSLDGTLLEEV 1353
             GSA  K ++VLGGDGFCGWPT L+LSD GHD+++VDNLSRR ID ELGC+SLTPIQSP+ RV+ WKE TG++IK+VN+DVAK+Y+LL++L KE KPD+++HFAEQRAAPYS K S+ KRYTVDNN GG++N+  A+++S +D H+ HLGTMGVYGYG SGGEIPEGYIDVTLPG R+  ILHPA+PGSVYH TKCLDALL+QFY KND LR+TDLHQGIVWGTNTPQT+ DERLVNRFDYD DYGTVLNRFLMQ A+ +P+TVYGTGGQTR FIHVTDTA+C+E A+ NPP     VEIFNQ+AET RVRD+AQM+A++TG +++F+ NPR EAAENEL+V N+KF NLG+D  +LD  L +EV
Sbjct:   58 NGSADKKKVIVLGGDGFCGWPTSLYLSDQGHDIVIVDNLSRRNIDTELGCDSLTPIQSPELRVQAWKEATGKDIKFVNLDVAKDYDLLVQLIKEEKPDSIVHFAEQRAAPYSMKTSKTKRYTVDNNVGGSNNLCCAVIDSEVDAHIVHLGTMGVYGYGTSGGEIPEGYIDVTLPGGRESNILHPAHPGSVYHATKCLDALLWQFYQKNDQLRITDLHQGIVWGTNTPQTLLDERLVNRFDYDGDYGTVLNRFLMQGAMGVPLTVYGTGGQTRAFIHVTDTARCIEIAISNPPETGERVEIFNQIAETRRVRDVAQMVAEQTGVEVNFLPNPRQEAAENELDVSNEKFCNLGLDPITLDTGLFDEV 422
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.520.1 vs. uniprot
Match: A0A1X6PDC9_PORUM (Epimerase domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PDC9_PORUM)

HSP 1 Score: 560 bits (1442), Expect = 2.770e-189
Identity = 264/367 (71.93%), Postives = 310/367 (84.47%), Query Frame = 1 
Query:  259 MSEGSAKTIVVLGGDGFCGWPTCLHLSDAGHDVIMVDNLSRRRIDLELGCESLTPIQSPQTRVKTWKEVTGREIKYVNIDVAKEYELLLKLFKEHKPDTVIHFAEQRAAPYSQKGSREKRYTVDNNTGGTHNMLVAIVESGL--DIHVCHLGTMGVYGYGNSGGEIPEGYIDVTLPGNRQQKILHPAYPGSVYHTTKCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTVRDERLVNRFDYDSDYGTVLNRFLMQAALDIPMTVYGTGGQTRGFIHVTDTAKCLEAAVVNPPAANGPVEIFNQVAETHRVRDLAQMIADKTGTKIDFISNPRNEAAENELEVKNDKFGNLGVDFKSLDGTLLEEV 1353
            M++   KT++VLGGDGFCGWPT LHLS+AGHDVI+VDNLSRR+IDLEL C SLTPI S   RV+ W +V+GR+I++V +DVA++Y+LL  L    +PD ++HFAEQRAAPYS KG+REKRYTVDNN GGTHN+L A+VE+GL    H+ HLGTMGVYGYG SGGEIPEGYIDV LPG R  KILHPAYPGSVYH TKCLDALLFQFY++NDGLR+TDLHQGIVWGTNT  T RDERL+NRFDYDSDYGTVLNRFL+QAALD+P+TVYGTGGQTR FIH++DTAKC+  A+ NPP A  PVEIFNQVAETHRVRDLA ++A KTGTK+  I+NPR EAAEN+L+V N KF +LG D  +L+  LL+EV
Sbjct:   21 MADPGRKTVLVLGGDGFCGWPTALHLSEAGHDVIIVDNLSRRKIDLELECASLTPIASMNERVRVWGDVSGRDIRFVRLDVAQDYDLLAALLAAERPDAIVHFAEQRAAPYSMKGAREKRYTVDNNVGGTHNLLTAVVEAGLAAHTHIVHLGTMGVYGYGTSGGEIPEGYIDVLLPGGRPSKILHPAYPGSVYHATKCLDALLFQFYSRNDGLRVTDLHQGIVWGTNTAATARDERLINRFDYDSDYGTVLNRFLVQAALDVPLTVYGTGGQTRAFIHISDTAKCVALAIGNPPEAGAPVEIFNQVAETHRVRDLAALVAAKTGTKVANIANPRKEAAENDLDVSNAKFRSLGYDPVTLEDGLLDEV 387
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.520.1 vs. uniprot
Match: A0A6U3UIB3_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3UIB3_9STRA)

HSP 1 Score: 558 bits (1439), Expect = 4.610e-189
Identity = 256/359 (71.31%), Postives = 307/359 (85.52%), Query Frame = 1 
Query:  277 KTIVVLGGDGFCGWPTCLHLSDAGHDVIMVDNLSRRRIDLELGCESLTPIQSPQTRVKTWKEVTGREIKYVNIDVAKEYELLLKLFKEHKPDTVIHFAEQRAAPYSQKGSREKRYTVDNNTGGTHNMLVAIVESGLDIHVCHLGTMGVYGYGNSGGEIPEGYIDVTLPGNRQQKILHPAYPGSVYHTTKCLDALLFQFYAKNDGLRLTDLHQGIVWGTNTPQTVRDERLVNRFDYDSDYGTVLNRFLMQAALDIPMTVYGTGGQTRGFIHVTDTAKCLEAAVVNPPAANGPVEIFNQVAETHRVRDLAQMIADKTGTKIDFISNPRNEAAENELEVKNDKFGNLGVDFKSLDGTLLEEV 1353
            K +++LGGDGFCGWPT L+LSD GHDV++VDNLSRR ID ELGC+SLTPIQSP  RV+ WKEV+G++IK+VN+DVAKEY+LL++L KE +PD+++HFAEQRAAPYS K S+ KRYTVDNN  G++N+  A+++S +D H+ HLGTMGVYGYG SGGEIPEGYIDV LPG R+Q ILHPAYPGSVYH TKCLDALL+QFY KND LR+TDLHQGIVWGTNTPQT+RDERL+NRFDYD DYGTVLNRFLMQ A+ +P+TVYGTGGQTR FIHVTDTA+C+E A+ NPP A   VEIFNQ+AET RVRD+A+M+A +TG + +F+ NPR EAAENEL+V N KF NLG+D  +LD  L  EV
Sbjct:   52 KKVIILGGDGFCGWPTSLYLSDQGHDVVIVDNLSRRNIDTELGCDSLTPIQSPSVRVQAWKEVSGKDIKFVNLDVAKEYDLLVQLIKEEQPDSIVHFAEQRAAPYSMKNSKCKRYTVDNNVSGSNNLCCAVIDSEVDAHIVHLGTMGVYGYGTSGGEIPEGYIDVILPGGREQNILHPAYPGSVYHATKCLDALLWQFYQKNDNLRVTDLHQGIVWGTNTPQTIRDERLINRFDYDGDYGTVLNRFLMQGAMGVPLTVYGTGGQTRAFIHVTDTARCIEIAINNPPNAGERVEIFNQIAETRRVRDVAEMVAKQTGVEANFLPNPRQEAAENELDVSNKKFCNLGLDPITLDEELFSEV 410
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KES1_9PHAE1.280e-29694.68Epimerase domain-containing protein n=2 Tax=Ectoca... [more]
A0A835Z939_9STRA1.620e-20278.20UDP-sulfoquinovose synthase plastid n=1 Tax=Tribon... [more]
A0A6V1JXM6_HETAK6.880e-20176.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2RTH5_9STRA1.890e-19471.89Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J5XDE6_DIALT2.200e-19271.93Epimerase domain-containing protein n=2 Tax=Diacro... [more]
A0A7S3V8N9_9STRA2.870e-19271.16Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A4D9CYN6_9STRA7.410e-19271.82Epimerase domain-containing protein n=2 Tax=Monodo... [more]
A0A7S4N1Z5_9STRA3.340e-19070.96Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1X6PDC9_PORUM2.770e-18971.93Epimerase domain-containing protein n=1 Tax=Porphy... [more]
A0A6U3UIB3_9STRA4.610e-18971.31Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:1046476..1058459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score842.8
Seed ortholog evalue8.7e-242
Seed eggNOG ortholog2880.D8LSQ1
Preferred nameSQD1
Model size2642
KEGG rclassRC00563,RC01469
KEGG koko:K01785,ko:K06118
KEGG ReactionR01602,R05775,R10619
KEGG Pathwayko00010,ko00052,ko00520,ko00561,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map00520,map00561,map01100,map01110,map01120,map01130
KEGG ModuleM00632
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006643,GO:0006664,GO:0006950,GO:0007154,GO:0008146,GO:0008150,GO:0008152,GO:0008270,GO:0008610,GO:0009058,GO:0009247,GO:0009267,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009987,GO:0009991,GO:0016036,GO:0016740,GO:0016782,GO:0019899,GO:0019904,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042594,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046467,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0101016,GO:1901135,GO:1901137,GO:1901576,GO:1903509
Exons8
EggNOG free text desc.racemase and epimerase activity, acting on carbohydrates and derivatives
EggNOG OGsCOG1087@1,KOG1371@2759
Ec32 ortholog descriptionUDP-sulfoquinovose synthase, plastid precursor
Ec32 orthologEc-15_003040.1
EC3.13.1.1,5.1.3.3
Cds size1593
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.520.1prot_Ecto-sp6_S_contig10.520.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 1046476..1057410 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348704.9191613-CDS-Ecto-sp6_S_contig10:1046475..10468221682348704.9191613-CDS-Ecto-sp6_S_contig10:1046475..1046822Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1046476..1046822 +
1682348704.9323683-CDS-Ecto-sp6_S_contig10:1050282..10503851682348704.9323683-CDS-Ecto-sp6_S_contig10:1050282..1050385Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1050283..1050385 +
1682348704.9423687-CDS-Ecto-sp6_S_contig10:1050848..10509531682348704.9423687-CDS-Ecto-sp6_S_contig10:1050848..1050953Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1050849..1050953 +
1682348704.9537406-CDS-Ecto-sp6_S_contig10:1052294..10524551682348704.9537406-CDS-Ecto-sp6_S_contig10:1052294..1052455Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1052295..1052455 +
1682348704.9634225-CDS-Ecto-sp6_S_contig10:1053137..10532631682348704.9634225-CDS-Ecto-sp6_S_contig10:1053137..1053263Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1053138..1053263 +
1682348704.9708643-CDS-Ecto-sp6_S_contig10:1054279..10544471682348704.9708643-CDS-Ecto-sp6_S_contig10:1054279..1054447Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1054280..1054447 +
1682348704.978422-CDS-Ecto-sp6_S_contig10:1055121..10552781682348704.978422-CDS-Ecto-sp6_S_contig10:1055121..1055278Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1055122..1055278 +
1682348704.9863331-CDS-Ecto-sp6_S_contig10:1056984..10574101682348704.9863331-CDS-Ecto-sp6_S_contig10:1056984..1057410Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1056985..1057410 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348704.9944546-UTR-Ecto-sp6_S_contig10:1057410..10584591682348704.9944546-UTR-Ecto-sp6_S_contig10:1057410..1058459Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 1057411..1058459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.520.1

>prot_Ecto-sp6_S_contig10.520.1 ID=prot_Ecto-sp6_S_contig10.520.1|Name=mRNA_Ecto-sp6_S_contig10.520.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=531bp
MARTLRVVLCALSLCANAEGFLSTSSSFAGKPSAVGAATAAAAAAGSRAQ
IAAGNKRRQRVTAADAGSVVARGASSSATVSAGGLCMSEGSAKTIVVLGG
DGFCGWPTCLHLSDAGHDVIMVDNLSRRRIDLELGCESLTPIQSPQTRVK
TWKEVTGREIKYVNIDVAKEYELLLKLFKEHKPDTVIHFAEQRAAPYSQK
GSREKRYTVDNNTGGTHNMLVAIVESGLDIHVCHLGTMGVYGYGNSGGEI
PEGYIDVTLPGNRQQKILHPAYPGSVYHTTKCLDALLFQFYAKNDGLRLT
DLHQGIVWGTNTPQTVRDERLVNRFDYDSDYGTVLNRFLMQAALDIPMTV
YGTGGQTRGFIHVTDTAKCLEAAVVNPPAANGPVEIFNQVAETHRVRDLA
QMIADKTGTKIDFISNPRNEAAENELEVKNDKFGNLGVDFKSLDGTLLEE
VGRRRGSSSPNAFVTNNIFHFFLPEFALKFAIPRCQFRPTEFVSKQPFFI
DGVHRLVVTLPSHAVVIFDVRNKSRSNPTF*
back to top

mRNA from alignment at Ecto-sp6_S_contig10:1046476..1058459+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.520.1 ID=mRNA_Ecto-sp6_S_contig10.520.1|Name=mRNA_Ecto-sp6_S_contig10.520.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=11984bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1046476..1058459+ (Ectocarpus species6 EcLAC_371)
ATGGCGAGAACCCTGCGCGTGGTGCTCTGCGCGCTGAGCCTTTGTGCCAA
CGCCGAAGGCTTCCTCTCGACGTCCTCCTCCTTCGCCGGGAAGCCCTCAG
CCGTAGGCGCAGCAACAGCAGCAGCAGCAGCAGCGGGGTCTAGGGCGCAA
ATTGCGGCAGGAAACAAGCGACGGCAGCGAGTAACAGCAGCAGATGCGGG
CAGCGTGGTTGCGAGGGGAGCATCGTCTTCGGCTACCGTGAGCGCGGGGG
GGTTGTGCATGTCCGAAGGGTCGGCCAAGACGATCGTTGTGCTGGGAGGT
GATGGGTTCTGCGGCTGGCCGACGTGCTTGCACCTCTCGGATGCTGGGTA
AGGGCGACGTTTTTCTGTGCGGTTTTTGACATCGACGCGCCCCGCCCCCC
CCTACATTGTACATGAGCCTGCTGTTCATGCTTCTTCTCCCCTGTCTCCA
TGCTGCTGTTGCAAACATGAGCAGCGCCCGAACTTTCGTGCATACTACCT
CTCTCGCCCCTTAGTTCACCTCGGTCACAACAGAGTTGCTTGGTCTCTGC
TGTATCGCCAAGGGAGGTTTGCAGGAACAGACACACCCTACAGCTATCGG
AGGGAGGAGGGAGGAGACAGGGAACGAACGGTAGATTCCTTTCCAAATCA
AAAAAAATTCAAAACTCAAAACTAAAATAAAGCTGTGTGCTGTTCGGGAA
ATCGTAGACCAGACAGCCCTTCGGTGACACTATGATTTGTTGCTAAATCT
ATCTTAGATTTTTTTCTGTAGATGGAGATATAGATATATTTTAGGGTTGT
GTATCGGCGCAGCCGAACGATATAATATGTATCGGAGATCGGCGCAGCCG
ATATAACGATATTTTTTCGATATATCGGCGAGCGAAGCGAGCCGTGGTTA
GGGGGCTCGCGAGGCGTTTTTTTACGCGATTTGGCTTCACTTAAGCATAT
TTTTTGGGTGATTTTGGGGCACTTCGACCATGCCATTTTTTGGTGGGTGA
TATCCTGAAAACTACTGAAAAACGCTAAAACTTGGAAACCATCGACAATA
AATGACAGATGATTAGTCAGTTCTCTTTCGAAGCTTTGGTTGGGTGGTAC
AACACGACCACGTTTGAACGTCTTCTGTGGTCCAAAGCAACAGCCGCCGC
AACAGCGAGGCCTCATAGGGGGTCCAAACGTGTAACTGTTGTAACATATG
CCCCCTTTTTGATTCACGGAGCCCCCTCAAATATATCGCCCAACATATCG
GGGCTGACAATAGATATTCGATACGATATATATCGTCCGATTCTATCAAA
CATATCGGCTCCGATACACAACCCTAATATATTTCGTGTCATGAGTAAGA
AAATAAAAAACTCAAAAAAGACGGCAACGGGGAAGACGTTCAAAAGTTTC
AAAAACCATCCCGTCCTTCAGGGACATGCATACAAGGCACACACACACAT
ACCAGCCCCTTTTACGCTCCATACTTCGGGAAGATGGATGTGCAGCAGCA
GCAGCAGCAGCAGCAGCTCCGGCACACGTGTTGACCAAAGAATCTCGCCG
TTTTACTTTATGTGAAGACAACAACATTGTTGTGGTCGGGTCAGGCCGAA
AAACTGTTCGCCCCCCCCCTCCCACCTTGCCAACATTGGGCGGCTGGCAC
ATGTCATATTTGTGTAGCTTTTGGGTAATTGTGTACAAGAAAGCGTGCAC
TTTTGCCGCTTTTCCCCGACAACCGTGGTGTGCCCGTGACGCACACTCCT
CTATGCCGCCTTTTTTTTTTTTTTCGACACCCACACAGCAGTAATTAGTC
TACACGCATGTGGCAAGGCGAAGAAATACAACAGTTACTGATTGGGGAAT
CGTATTGTTGATGTAACAAACAAAAAACAACGGTTTAGTGCCTCGGTAAC
CCTGCAATCGATGCACTGCTATTTACTTGATTTGTAAACCTTTTGGATAC
AGAGTTGATTTGTCGTCTTGTTTTTTTAGTTTTACAAGTATATTACTGCT
ACAGAGAAAAAAATAGGATCCTCCCGCCCCCCCCTTCACTGCAAAGACTT
TCAACACATCCCCGTCTGTGGTGATGCTCTCGAACGGGTCACGTTGTCTG
TCAGTGATTGTCTACTTACCGAAAGTAAGTTTATTGACGAAAGATTCTGC
TAATTTTATGAAGGAAGTAAAAAACGCCATGCCTTCCGTCGAGATGCATC
TTGAGGGCGTTTACTAACGTCCTTCTTCTATGCATACAACCTGGAACAGG
CTGGAACAGGGAATTCTGAATTCCCTGATCCCTGCTGTTCCGTGTTGTTG
TGTCCTAACCTACCTATATGCATATGCAGCAACAAATCGGGCATGGGGCA
CGGAACATGAACATTTCACCGCGCGCACGCGGCCCGCAGGCATCGAAAGG
CAACAAACATAACCATTGGAGGCAGGAAAGACGATGGGGGGGGGTACCGG
AGGGAGGGATAGTGGTGTAGGTTTTCAAGGAAGCCGTTGACGAGCGCACA
TCACTCACATGTGCTAGAATCATTTTTCGAGCAGGCGGTGCTCGCCGTGC
AATCTGCACCGTCGAGAGTGCTCTGGAAGGCATGCGTCTTGGGTTGCGGT
CAACGGCAGGTTAGCCGTTATCTGTGGCACTCTACGTCCACGTATCTTTT
TCCCAGACACAACGGCTTCACGAGCATCCGCCGCCGCCGTTTTTTTTTTT
TTGCGAGACACCTGACGATGGTGCCAGGGCCTATGTCGCTTGAACCGGTA
GCATGCAGCACCTGTGGCAGCCACAAGCCCCGAGTTGATCACACACATCC
CACCGCGTCCTGAATTGCCGCCGAAGAGCATCGAAGAGCCCGTGTTCCAC
TTCCAGGGAACATGGGTCTGTTGGCTAAATTTTAGTGAACTTGCTTCCTT
ATATTTTTGTGCGGCATAATGACCTAAACATGGAACGTGGGAGGTCGCAG
TCGAATCCAGGAAGTGACCAATCAGACAATAATTCCGAGTTCCCTGGTTC
AGTTTTCCCTGTCCTGAAAAGGGACGTTCGTACACGCCCTGAGCGCTCAA
TCAACAACCTAAAACTGTTGGAGGATTTTTCTTGGTCACCTCACCACTTT
TGGATGCGTATCATCAACCAAAATGATGGTAAGCGATTCCTCTTTTGCGA
TGTTTTCGTTGTTGCTCAGAAGACAACACAAAACCGGGGTTTCCCTCTGG
CTTGGCGTGTTTTTCACGGTATCACGTGATCGTTAGCGACTTTAGGTCTA
ACCGATGTTGCACTTTGCGAGGCTAGGTTCCTCACCCTAACCCTAGCAGC
CGCGTTCTCGGAATGCGGAACAGCGAGAGGGCGCTGGAGAGGGTCAAGGC
TAGGAACGGACCAATCAGAGGGCATGAAACCGCTAGGAAGAGTCACTTAA
CAGGTTGCAGAAATTACTGCTCCGTGGCGGCCCTCTTTTTTGACTTTTTG
TTCCTGTTTTTGTGCGTACATGATTAATCTCTTGCGCCTTGTGTGTGACC
ACGGGTTGGAGTAAACGGCACGTTTGCAGTGAGCACTGATTTGAAGTGAA
GACACAAGCAGATGCTGTAAATAGTCCGGGATGATTGGCAATATATTCAT
GGCAGCAAAGAGAAAATGTGATGACCAACGTGTTTTTCTACGGTTCCCCG
AGCAGCTTATGGTGTAGACAAGCGATATCTCCCCTGTGGGTGACAGCCTC
GACAACACAAGATTGTTTGGTTTTTCTTCTCGCATAAATACCACGCTGCC
GTAGAAAAGATCCACTGCGTGACAAAACACCATGCACTCTCGCACGTGGA
CACGCAGGCACGACGTCATCATGGTGGACAACCTGTCGAGGAGGAGGATC
GATCTTGAGCTAGGCTGCGAGTCGCTGACGCCAATCCAGAGCCCACAGAC
CCGAGTCAAGGTGAGAGTAAGACCACTTGATGCTGCCGGTAGGTATGTAG
CCTTGGCGAGGACAGTATGCTTGGGGTATGCATTCGAGGCGGGAGTTACC
GCAGGTGACACAAGATACACACACCCCGGGCCGATTTGTCAAAGCTCGAC
TACTCCACGATGAAGATGATGCCGAAATCAAGTGACGTGTTTCGGAGAGG
TCTCGACGAGACAGACGGTTCCAACGCTTCTGTTCTCGTCACCGCCGCTC
TTTCTTCCGTGGAGTTGTACTCGAGCCTTGAAAACCGGTCCGGGGGGTGT
GGTATCTTGTGTCGCCTGCGGTAGGGTTAGGCTTTCGAATCCCCCCTAAA
CCGGATCCGAATAGTTTTCACGAAGCGTCGTTTTTAGTGAATTTCTTGAG
CTTGATTTCGTGAATGCGTGTGTTTGCTCGAACGTGTCTCTCTCTCTCTC
TTTTTTGTTTTGTGTTTTTCCAGACCTGGAAGGAGGTGACAGGGCGCGAG
ATCAAGTACGTGAACATCGACGTCGCCAAGGAGTACGAGCTGCTGCTCAA
GCTCTTCAAGGAGCACAAGCCCGACACGGTGAGTGAGATACTGGCTGCTG
TGAGGGAGATGGTGACGTGCTACGGCCTTTCCCAGCATGTGTACACGCCA
CTGGCTGTGCTTTTATAATAATAGCATCTTCCAACGGTTTTCGTGCCGAC
TCACGCGACGCCGAACCAGTTCGGATCCGTGCGATTTCCAGCAGCCACAC
CATGCCATTCTTTACCGCAAGGCTCTTTTTTTTTTTTTTTCCATCTTTAT
CCGGATCGCGGTGCTGACGAAGCTCACTGATCGGGAGAGCGGGCGCGCGA
CGCGGCTACGTTGCCGACGAGGATTGGTGGGAGACGGTCCACGTTCTCGG
GCCGCGATCAACAAGAAGAATTAGAAGCGCCTCGCCAGAAACGAGGGTGG
CACATTCGACCGAAACTGCGGCACCTCGCACGCATGTCGCCACCAAATAC
CCAAGCTCTCTATGTGTGTTGTGTGTTTTTATTGTTAGCATCGACCCCGC
CGACCGGCTGACCAATGAAAAGACGTCAGTCTCAGTGCGGTTGAAAACAC
GAAACACTTATAAATGCCATTAACTGGGACCCTGTGTGTGTTCGTCCCAT
ATATTCTGGCGCCGGTATGCAGATTTTTTTGGCGTATTCACGTACCTGAC
GTATGAGCCGGGGTGACACAAGCGGAAGGTCACACCAGTGTGGAGCTTTT
TTGTCATTTTTTTGCTATTGTTTTGTTACCCCACCTTTCCCTTGCCGCTG
CGGTGCTGAAGGGTTCAGCCATCCCCTTCCCTCGTCGACCCTGAAGCCGA
AGCGTGTTTGCTCTGTTCACGCGAAAAACACGGCAAGGATATGGCACCTT
ACGGAAGCACGTCATGTCATGTATCGGCTCGTCCCCGTCATGTGCCGAAA
CTGAAATAAGGCGCTCGTCGGCGGAATGGTAGCTTTTTTTTTTTCTGGGG
GTGGGTCGGTTCGGTTGCGGACCAGAGCGTTTCTTTTGTTGTACAAGCAG
TAGGCCTCCACAAGCGCAACAAAGCCAAAGACCTTGGGCCTGCCTATGTA
GGACAGAGCAGGTACTGCGAGAGCGACTGTAGCTGCTGCTACACTTCACA
CAGGTGGACGGGGATGTCCCTCCATGCATGTATTTGGCCGCCAGATTGAT
TGGCACTCTCCCGAATGCCCGGTTCTATCCCGAGAAGGAATCACTTTGAA
GATTTCCATCCGTGTCTCACGCGGCGATTTCACCGGCACAACTACACCGG
GACGACAGCGTGGCACTACGTCAAACCGACACTATCTACATTACTGAGGG
ACCCCCTATCACTTCACTGCTGTCTGTCTGTACCCGCTGTGCACGTTTTT
TTTTTTTTTTTGCGTTCAGGTGATCCACTTCGCGGAGCAGAGGGCCGCGC
CGTACTCGCAGAAGGGCTCGAGGGAGAAGCGGTACACCGTCGACAACAAC
ACCGGGGGGACGCACAACATGCTGGTGGCCATCGTGGAGTCGGGCCTTGA
CATCCACGTCTGTCACCTGGGGACCATGGGGTGAGAGAGACGCAGCACCG
ACAGAGAGACAGCAGGAGTGGTGGGAATATTAGCACGGTTCTTTCCTCCC
CGCCCCTGTTGCTCTTTTTCGGGGAGAGGCATTGGTGATAAATCAGGACA
GTTTTTTGTCCCTTCCGTGCCCCCCTTGTTCTCTTTTCGGGGAAAGGAGG
CGATGATGAATTAACGCACTCTTTTCTTCCTTGGCCCTCCCTGTTGATGT
TTTTTTGCCGAGAGAGAGGGGTGGACAGCAGGGGTGGTGATGGTTTTAGA
CAGTGTTTATTCCTTCTCTCTCCCCCCCCATCCCCCCGACCCTATTTTTT
CTTTTTCGGGGGAGACGCGGACGGACCGGGCGATGGTGTTCGTGCCCCCC
CCCCTATCGCCCTGGCTCATCCTTGTGAAACGTAGGCCGGGCCAGCGAAA
ACCTGGCATATAGCTCCGTCCCGGCGTTGTTGAAAAGTGATGCAAGTTGA
CTGGTCTGACGACTACGGCATGCGTTTACACGAGTACACACACACACACC
TTTTGGCCTTTTGGGAAAGTAGGAACGATTGGTCATCGGCAAGCCGTCCT
GTGGAAGAACACTCTGTCTTGTCGAGGACAGTGGTCTACCAGCTGCGAAG
GAATACGAAACATGAGTGCCCCCCGCACACTGTCCCTTTGTTGCGATCAA
AATGCCTTCCAGGGTGTACGGGTACGGCAACAGCGGGGGCGAGATCCCGG
AGGGGTACATTGACGTGACCTTGCCGGGCAACCGTCAGCAGAAGATCTTG
CACCCGGCGTACCCGGGATCGGTTTACCACACCACCAAGTGAGAGAGGGA
GAGAGAGAGAGAGAGAGGGAGAGGGAGAGAGAGAGCGTGATGTTCAGGTA
GGGTATGTAGGTTAGCTCAAACAGCTGTAGGGAGAACAATCAATAGGTTT
TTTCGCACAATAGGAGGCATCTCTCAATCTCTCATTTCTCAAGGGCTTGT
GCGTGGTATCGTTCGTGGGATGCTTTGACGTTGGCATCTGGGCGCTCGCT
GTTTGCCCGTTGGAGGTACAAGTATATACCGTACACCTTTTCGAAATAGT
GTTGGTCCTTGAGGCGGGTGTGTGGGGTTTGGAGAAACTTGGGTGGCGTT
CGCGAGCAGTGTAGTGTAGTGTACATGTAGCGCGAAGAACGACAAAGCTG
TTCGTAAACGGTGATCCTCCGCATTTTTTTTTTGTTGCGGACGTACGTTC
GGGCTAGAAGTTGCTTGGCCACCAGACGTGCATTTTTTTTTTTTCGCAAT
CACGCGCCCGTCATTGCTGTCGGACGAGTCAAGTGCCGTTTTTCACACGT
CCGGGGCGTACCTTTGCGATGTGCCACAGATAACGCGCCATCTGTGCCCC
CGGATGCGTGTTTAAGAGTTGTTGGCTTGTTGGCGACGTGCTCATGCGGC
ACACCTTATGTACAGGAAGCTCCTCGCCAAACGCTGGCTGGCTGTGATGG
ACTATCTCAAACCGAATGTCAAACATGCCGGGATGCCCAACCAACCCGTG
GCATATCTGGTTCGGCGCATGGATGGCATGGATGGCCAGCTTCTGGTTCA
TCCTTGTGAACCATAGCCCAGGCCGGCAAAACCGGCATGTCCCGTGATTA
GAGGTCTATGATATACAACGACTACGGCATACGTTTACATGAGCCCCCTC
CCTCGTGAGTAGGAAGGAACGATTGGCCATCGGTGATCGATCGGTCGTGT
GGGAACAATGCTCCGTCCGCTCGACGACGCGTCGTGGTCAATGGCCTAAC
CGCTGAGGCATGCAAAACATAAGAGTACGCCCCCGCCCCCTCGTCACACG
GCAGGTGCTTGGACGCGCTGCTGTTCCAGTTCTACGCCAAGAACGACGGG
CTGAGGCTGACCGACCTGCACCAGGGGATCGTTTGGGGGACCAACACGCC
GCAGACCGTGCGGGACGAGCGGCTTGTGAACCGCTTCGATTACGACAGCG
ACTACGGCACTGTCCTTAACCGGTGGGTTGGTGGCTGTGCGTGCGTGCGT
GCGTGCGTGCGTGCGTGCGTGCGCGCGATGGTGGGTGGGcTGGGTGGGCT
GGGTGTTTTTTTGGCGCGTGCCTTTGTCGTGGATTTGGTGTTTGTTTTTT
AGGGGGCGCAGTTGGCGCTACTTGTAGAACCCTATTATAGGTGGAACACT
GACGAAGATGATATTCGTGCAACACAATGTGTACTTTTACGTCGTTGCTC
CAATGATGGTGCGGTGCCTTGATGGTGTTGTTCTGGGGGGCGTTTTGGAG
CTCGGGGAGCGTTGTGAGCTGGTTCGGCTGACGGCCGCGGCGACCAATAG
CGTCCTGTCCTGTCCGGGCTTGGTGTGCATCGCTGCTAACGTTGATGGAT
GATGCTTGTCCACTGTTGATGTTGTTGTTGCTGCTGCTGCTGTTGTCGGC
TGTGAGCGGTGTTGGAGGGCGGGGAGCGTGGTGAGCTGGTGCGGTTACGG
CGACCGCACTAGTGCCGTCCTAGGCGGCTCGTTGTGCGCCGCTGTTGATG
TCGATGGTGTAGGACAGTAGGACAGTGTTGTTGTGACATGCCTGTTGTCG
GCGTTCAGCATTCTTTTTTATCCTTTTGAAGTGTTTACTTGGATATTGGC
GAGTCCCGTCGTCACCCCCCCTCTCTCGCCGCCGCCGTTCATGTAGATTC
CTCATGCAAGCGGCCCTGGACATCCCAATGACGGTGTACGGCACGGGAGG
CCAGACTCGAGGCTTCATCCACGTCACCGACACGGCCAAGTGCTTGGAGG
CGGCGGTGGTCAACCCCCCGGCAGCGAACGGCCCCGTGGAGATCTTCAAC
CAGGTAAGCAAGCGCGAAATGTGCCAAGTACGTGTGGAGAGGTTTCTTGT
GGGTAGGTTGTAGGCACACACGTTGTCGTTTGCTCGCCCCTTCTCAAGCA
AGCAGAGAGAGTGTGTGCATCGCGGTCTGCCGTGGGCGGGTTGCGGGCAC
AAGACGTTGTGTGTGTTTGCTTGTCCCTTTGTAGAATATGTCGTTTTGCT
GTCGTCGTCGACGTCGGATGTATGCTGACTGTAGTACTGTTCCCTTGGCC
GATCTCGTTGTTAGCCTTGGTCGCACTTTGTTGTTGTTTGCCATACCCAT
GTTGTCGTTTATTTTGTTGCCGTGATCTTGCTGCATCACCCTGCTTGTAG
CTACTACCGAGCGTTTCTTCCTCGTGGCTTGTTCAACATACATACTCCGT
ACGTTGGCGAATTGTTCGTTTTTTTTCGCCGGCAGGCCGGCCGACCGTTT
TTTGTTTTGTTTTTTTCCTTGGTCATTTCACTTGCTTTTTGCCTCTGTCA
TTTTCACGCCATCAATAATTTTCTTGTTCCCGGCGTCGTAACACTTTTTT
GGGGCTTCCCGTTTTTCACCCTCCTATATATAAGACTTTCTACTGATTTG
AATTGAATATCCTTCCCCAGCATCTCAAGAATTTCTTTGGGCTTTTAGGA
CTAGTTACGTACGTTAGTGTCGAACACCATGTCAACGAAGCAAATACCAC
ACGTTAGTGTTGTGTGTGAACAGCAGCAGCAGCAGCCGCAACCGGTAAGC
AGAAACACGTAGTTTTCCAGCATTGGAGCCACGTCGTGGCGGTGTCAGGA
GAGGCACAGAGCAATGCAGACCGCACAGACCGCCGAGCCTCAGGTTGGGA
CCGACGTTGGCATGCGCATGTGTGCGGCGGCATGCGGGCTTTCAGCCAAG
AATAACCCCAGAAAAATATTTAGACAGCGCTTTTTTTTATATACCCGAGC
ATGAGGCAAAGGCGATACGACACCTCGGCCGGCCGGTTTTACATAAGATC
GTGAGGACACTGGTGTGGTGGTGTTGTTAGTCTTGGGTGTAGCTAGCAGC
TAGCAAGGTGTAGAGGCGCAGAGATGGGTGAGCACTAGGACACGGGGTGG
GATGCCCTCAAGAGATATGGATGTGGTAGGCCTTGCCCCATTCTGCGTTC
TTTTTTTTTCTGCCCCTCTTATTCATGAGCATTTGCCTTTTTTGGGGGGT
CAAAGACGCTCGAAAATATGCCCCAAACTGCCACTTATGCTCGATCTTTC
GCCAATCATGCCCAATTCGGTCATATATGCTCGAATTCTGCTCAAGTTTA
CAGTATGCTTTTCTGCTCTTTGACGCCAGAGCAGAATGGGGCAAGGCCTA
GCATGTGGGCGAAACAATTTATGCTGGTCGCGGGTTGTTATTGCAGCCAA
ATTCCTACAGAAGGATCGTTATCAAGAAAAAGCTCGCGCCGAGCTCCCAA
TAATGAAGCAAACTTTATTCTTGTCAATTTGCATACAACATGTGTTGTTT
TCCTCTGTTTGCTTTTTGCATGTTCTCGCATCACCCCCTTGCCGCGGTGC
TCTCTTAAACCACTCCGGAGGGAAGTCTTGCACCTTTCAATGTTTTGGGA
GCGGCTGTTTCCCAGCCTCCATCATTTGGACGTGCAATACTTTTGTTTCC
GGCGTCACTTCACACTCATTCTCTACCGTTTTTTCTCACTTTTTTTTTTT
CTTCTCCAGGTGGCGGAAACCCACCGCGTGCGAGACCTCGCCCAGATGAT
CGCCGACAAGACGGGCACCAAGATCGACTTCATCTCCAACCCTCGCAACG
AGGCTGCGGAGAACGAGCTGGAGGTTAAGAACGATAAGTTCGGGAACCTG
GGCGTGGACTTCAAGAGTCTGGACGGGACGCTTCTGGAAGAGGTGGGGAG
GAGGCGCGGTTCTTCCTCTCCCAATGCGTTCGTTACAAATAATATTTTTC
ACTTTTTTCTCCCGGAGTTCGCTCTGAAGTTCGCCATACCACGTTGTCAA
TTCCGGCCTACGGAATTTGTGTCGAAACAACCTTTCTTTATTGATGGTGT
TCACCGCCTTGTAGTCACACTGCCGTCTCACGCGGTTGTTATTTTCGACG
TGCGGAATAAATCAAGAAGTAACCCAACTTTCTGATGGTGTTCACCGCTT
TGTAGTCACGTTCTCTCCGGCTTGATGAACTGACCACACCGGATTGTTTT
GTTTGCTCTCCGCCGCCGTGACTGAACAGGTGAGGGACATCGCGCAGAAG
TACCGCGACAGGGCGGACCTGGAGCTGGTGTACCCCACTTCCTACTGGAA
TAAGAACCGGGTCAAGGCGGCCACGGACGGGGAGGTGAACGGGGCGCCGG
AACCGACACGGCTCTTCGTGGATGTCAAGACGGGCGCACAATAACAACTT
CTTTTTCCCTTTGGTAGTTTTTATTTTAGGCGATGGGAGAAGTGTTTGGC
TGGAGTTTTTTTTGCATGCTGAGCGAGGGGGCTGATTTTTTCGGGGGAGT
TGAGCGAAGAAGCAGGGGAAGCGGTCACTGTGGTATGGGAATACCGCGGT
ATGTTCCGTCCCGTAAGCTGGTTGGCCATCTCTCGCACCGGAATGCGGTG
TGGATTGGGTTTGATTCTATGCATACCCCACCCAAAGCCATGCCACATGA
AGGACAAGAATGGCCGGCGGAGAGGGGTAGTGTGTGGGGGGATCATTTAG
CGCCTGTTTTGGTCGATTTGTGTTTTTTTTGTCTGCCGTAAAAGGGGTGC
CACGAAATCCCCGTGAAAATCAAAATGTGACAAATCTTGCCGAACCTGGC
AGTTGTACCTGAACATGAACAAGCCACACATGTGGGAGAGGGCCACGACT
ACGGCGTGCGTTTTTTTGCATGACTCCTTGTCAGCGACACGGAATTGGTG
CCGCTTGGAATGTTCGACCTCTCAACACAGCAGTGGCGTGCAGCACACAT
GCATCTTGTGGTGTTTGCGAGCATGTCCATGGCCAAACGGTTCCCGTTGT
GCGACACATCCGTTGGTATTGCTTTGTCCGCCTGCGCACATGGTCGGCGG
TAAAATGAAAGATCGGGTTGGAGACCCGGATGAACACACATTTACCCGTC
GGATCCGGATTGGATATGTCCACATGTCCACCCGTCTACTGATGTTGCTA
AGAGCATGATCTTGTTTTGGACAATCACCACACC
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1046476..1058459+

>mRNA_Ecto-sp6_S_contig10.520.1 ID=mRNA_Ecto-sp6_S_contig10.520.1|Name=mRNA_Ecto-sp6_S_contig10.520.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1593bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1046476..1058459+ (Ectocarpus species6 EcLAC_371)
ATGGCGAGAACCCTGCGCGTGGTGCTCTGCGCGCTGAGCCTTTGTGCCAA
CGCCGAAGGCTTCCTCTCGACGTCCTCCTCCTTCGCCGGGAAGCCCTCAG
CCGTAGGCGCAGCAACAGCAGCAGCAGCAGCAGCGGGGTCTAGGGCGCAA
ATTGCGGCAGGAAACAAGCGACGGCAGCGAGTAACAGCAGCAGATGCGGG
CAGCGTGGTTGCGAGGGGAGCATCGTCTTCGGCTACCGTGAGCGCGGGGG
GGTTGTGCATGTCCGAAGGGTCGGCCAAGACGATCGTTGTGCTGGGAGGT
GATGGGTTCTGCGGCTGGCCGACGTGCTTGCACCTCTCGGATGCTGGGCA
CGACGTCATCATGGTGGACAACCTGTCGAGGAGGAGGATCGATCTTGAGC
TAGGCTGCGAGTCGCTGACGCCAATCCAGAGCCCACAGACCCGAGTCAAG
ACCTGGAAGGAGGTGACAGGGCGCGAGATCAAGTACGTGAACATCGACGT
CGCCAAGGAGTACGAGCTGCTGCTCAAGCTCTTCAAGGAGCACAAGCCCG
ACACGGTGATCCACTTCGCGGAGCAGAGGGCCGCGCCGTACTCGCAGAAG
GGCTCGAGGGAGAAGCGGTACACCGTCGACAACAACACCGGGGGGACGCA
CAACATGCTGGTGGCCATCGTGGAGTCGGGCCTTGACATCCACGTCTGTC
ACCTGGGGACCATGGGGGTGTACGGGTACGGCAACAGCGGGGGCGAGATC
CCGGAGGGGTACATTGACGTGACCTTGCCGGGCAACCGTCAGCAGAAGAT
CTTGCACCCGGCGTACCCGGGATCGGTTTACCACACCACCAAGTGCTTGG
ACGCGCTGCTGTTCCAGTTCTACGCCAAGAACGACGGGCTGAGGCTGACC
GACCTGCACCAGGGGATCGTTTGGGGGACCAACACGCCGCAGACCGTGCG
GGACGAGCGGCTTGTGAACCGCTTCGATTACGACAGCGACTACGGCACTG
TCCTTAACCGATTCCTCATGCAAGCGGCCCTGGACATCCCAATGACGGTG
TACGGCACGGGAGGCCAGACTCGAGGCTTCATCCACGTCACCGACACGGC
CAAGTGCTTGGAGGCGGCGGTGGTCAACCCCCCGGCAGCGAACGGCCCCG
TGGAGATCTTCAACCAGGTGGCGGAAACCCACCGCGTGCGAGACCTCGCC
CAGATGATCGCCGACAAGACGGGCACCAAGATCGACTTCATCTCCAACCC
TCGCAACGAGGCTGCGGAGAACGAGCTGGAGGTTAAGAACGATAAGTTCG
GGAACCTGGGCGTGGACTTCAAGAGTCTGGACGGGACGCTTCTGGAAGAG
GTGGGGAGGAGGCGCGGTTCTTCCTCTCCCAATGCGTTCGTTACAAATAA
TATTTTTCACTTTTTTCTCCCGGAGTTCGCTCTGAAGTTCGCCATACCAC
GTTGTCAATTCCGGCCTACGGAATTTGTGTCGAAACAACCTTTCTTTATT
GATGGTGTTCACCGCCTTGTAGTCACACTGCCGTCTCACGCGGTTGTTAT
TTTCGACGTGCGGAATAAATCAAGAAGTAACCCAACTTTCTGA
back to top