mRNA_Ecto-sp6_S_contig10.513.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.513.1 vs. uniprot
Match: A0A6H5L5K3_9PHAE (TLC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5K3_9PHAE) HSP 1 Score: 536 bits (1381), Expect = 1.450e-176 Identity = 259/269 (96.28%), Postives = 262/269 (97.40%), Query Frame = 1 Query: 67 MAPNNKAVSAGTHPHGGGGQAFTGQKCPFASLAPQAAS--SGGSNRNPHAVLTKQKSMYVDGLAARIHDDMNLAVLAGMALMAAWAMWEGDRWTQYALTLFAAGYMVLDACWILCNPSGVKSPKTVLGHHVATLSVLVDPLLQPQHAFYTACALLVEFNTFLLILRRRVSWGGLLEVPFALSWVALRLIWYPFLGFYFTMCTFPETLKALYPERLVEWRFAVEEDRPVPMFLGSYLAWVGICIFQGWWSCALVRSYGRPAVVTRDKKFL 867
MAPNNKAVSAGTHPHGGG QA TGQKCPFASL PQAA SGGSNRNPHAVLTKQKSMYVDGLAARIHDDMNLAVLAGMALMAAWAMW+GDRWTQYALTLFAAGYMVLDACWILCNPSGVKSP+TVLGHHVATLSVLVDPLLQPQHAFYTACALLVEFNTFLLILRRRVSWGGLLEVPFALSWVALRLIWYPFLGFYFTMCTFPETLKALYPERLV+WRFAVEEDRPVPMFLGSYLAWVGICIFQGWWSCALVRSYGRPAV TRDKKFL
Sbjct: 1 MAPNNKAVSAGTHPHGGGDQASTGQKCPFASLGPQAARRVSGGSNRNPHAVLTKQKSMYVDGLAARIHDDMNLAVLAGMALMAAWAMWKGDRWTQYALTLFAAGYMVLDACWILCNPSGVKSPRTVLGHHVATLSVLVDPLLQPQHAFYTACALLVEFNTFLLILRRRVSWGGLLEVPFALSWVALRLIWYPFLGFYFTMCTFPETLKALYPERLVQWRFAVEEDRPVPMFLGSYLAWVGICIFQGWWSCALVRSYGRPAVATRDKKFL 269
BLAST of mRNA_Ecto-sp6_S_contig10.513.1 vs. uniprot
Match: A0A835Z8V7_9STRA (TLC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8V7_9STRA) HSP 1 Score: 243 bits (619), Expect = 7.030e-68 Identity = 120/201 (59.70%), Postives = 141/201 (70.15%), Query Frame = 1 Query: 235 YVDGLAARIHDDMNLAVLAGMALMAAWAMWEGDRWTQYALTLFAAGYMVLDACWILCNPSGVKSPKTVLGHHVATLSVLVDPLLQPQHAFYTACALLVEFNTFLLILRRRVSWGG--LLEVPFALSWVALRLIWYPFLGFYFTMCTFPETLKALYPERLVEWRFAVEEDRPVPMFLGSYLAWVGICIFQGWWSCALVRSYG 831
+ G A++HDDMNL VL GMAL + AM+ DR QY LT+FA YMV DA WILCN VKSP+TVLGHH ATL+VL+DP + PQHA YT ALLVE NTFLLI RRR WG L+E PF SWVALRLIWYPFL F++ +C FP L +YP +V WR +E D V ++ SY AWVGIC+FQ WWS L R+YG
Sbjct: 56 WTAGRGAQLHDDMNLVVLLGMALTSMVAMYTRDRALQYGLTVFAVAYMVTDAAWILCNMRAVKSPRTVLGHHAATLAVLIDPYMHPQHALYTCWALLVEANTFLLIARRRFRWGASALVEAPFVASWVALRLIWYPFLAFFWGLCAFPG-LADVYPAAIVRWRLRIEVDL-VRLYPASYAAWVGICVFQLWWSAQLFRNYG 254
BLAST of mRNA_Ecto-sp6_S_contig10.513.1 vs. uniprot
Match: A0A7S4PA72_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PA72_GUITH) HSP 1 Score: 174 bits (440), Expect = 1.060e-44 Identity = 100/230 (43.48%), Postives = 134/230 (58.26%), Query Frame = 1 Query: 205 HAVLTKQKSMYVDGLAARIHDDMNLAVLAGMALMAAWAMWEGDRWTQYALTLFAAGYMVLDACWILCNPSGVKSPKTVLGHHVATLSVLVDPLLQPQHAFYTACALLVEFNTFLLILRRRVSWGGLLEVPFALSWVALRLIWYPFLGFYFTMCTFPETLKALYPERL---VEWRFAVEEDRPVPMFLGSYLAWVGICIFQGWWSCALVRSY----GR--PAVVTRDKKFL 867
+A +Q + A+ +HD++NL L + A A+ DR LT+ Y++LD+ WI P VKSP V HH+ATL VL+DPLLQP+H YT+ LLVE NT LL+LRRRVS+ ++EVPF L+WV LR IWYP L FYF +C P T L P L +E R +E PVPM S L+W +CIFQ +W+ L ++ GR P ++KK+L
Sbjct: 52 YAERKRQSLSWQPSPASDLHDNVNLIALFLLGGGAIAALALQDRNMHDLLTVSGFVYILLDSVWIFSQPKIVKSPGMVGSHHIATLLVLLDPLLQPKHRVYTSACLLVEINTLLLLLRRRVSYSAIVEVPFILTWVLLRNIWYPLLMFYFFLCFSPSTFIPLLPSSLSWVIEMRTKIELRNPVPMMGVSLLSWAMVCIFQFYWTAQLFSAHPWIWGRRKPTANGKEKKYL 281
BLAST of mRNA_Ecto-sp6_S_contig10.513.1 vs. uniprot
Match: A0A7S0VYL2_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VYL2_9CRYP) HSP 1 Score: 170 bits (431), Expect = 1.200e-43 Identity = 86/208 (41.35%), Postives = 126/208 (60.58%), Query Frame = 1 Query: 250 AARIHDDMNLAVLAGMALMAAWAMWEGDRWTQYALTLFAAGYMVLDACWILCNPSGVKSPKTVLGHHVATLSVLVDPLLQPQHAFYTACALLVEFNTFLLILRRRVSWGGLLEVPFALSWVALRLIWYPFLGFYFTMCTFPETLKALYPERLVEWRFAVEEDRPVPMFLGSYLAWVGICIFQGWWSCALVRSY----GRPAVVTRDKK 861
A+ +HD NL VL+ + + +A+ + + LT Y++LD+ W+L P+ VKSP V+ HH ATL VL+DPLL P H+ YT+ LLVE NT LL+LRR++S+ L+EVPF +SWV LR +WYP L F+F +C+ P TL L+P +VE R +E VPM S ++W +C+ Q W+ L + GR R+++
Sbjct: 50 ASELHDSCNLFVLSLLGFGSVYALLTNHQASHRLLTTVGFMYVLLDSAWLLAVPTVVKSPGVVIAHHAATLLVLLDPLLSPSHSVYTSACLLVEINTLLLLLRRKMSYSVLVEVPFIISWVLLRNVWYPLLMFFFILCSAPGTLGPLFPRAMVEARRRIEGPEAVPMRFVSMVSWTAVCVLQLKWTGQLFAQHPWFGGRNKARDRERR 257
BLAST of mRNA_Ecto-sp6_S_contig10.513.1 vs. uniprot
Match: A0A7S2V1S4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1S4_9STRA) HSP 1 Score: 152 bits (385), Expect = 1.160e-37 Identity = 85/235 (36.17%), Postives = 130/235 (55.32%), Query Frame = 1 Query: 151 FASLAPQAASSGGSNRNPHAVLTKQKSMYVDGLAARIHDDMNLAVLAGMALMAAWAMWEGDRWTQYA--LTLFAAGYMVLDACWILCNPSGVKSPKTVLGHHVATLSVLVDPLLQP-----QHAFYTACALLVEFNTFLLILRRRVSWGGLLEVPFALSWVALRLIWYPFLGFYFTMCTFPETLKALYPERLVEWRFAVEEDRPVPMFLGSYLAWVGICIFQGWWSCALVRSYGR 834
F ++ P+ +S S H +K + + +HD +NL L +A +A + +T Y+ LDA WI PS +KSP TV HH++TL++L+ P+ +YTA A++VE NT LL +RR+ +G +E+PFALSWV +RL+WYP LGFYF +C F + L P+ ++ R +E P P++ S +A+V IC+FQ +WS LV+S+ R
Sbjct: 10 FDNVGPEKCNSRNSIFQQHVPEKLEKGGWNPSKLSELHDSINLVWLTVLASLAIVVLLSFPTCHSLLVLMTTLTTVYIALDAIWIFMFPSSIKSPVTVCLHHISTLAILLGPIFNAISGSGLQGYYTAAAIIVEANTVLLTMRRKFKFGLWVEIPFALSWVLIRLVWYPILGFYFMVCAFHSVRELLAPQFILHIRETIEGPEPEPLWKLSAMAFVLICMFQIFWSVPLVKSWMR 244
BLAST of mRNA_Ecto-sp6_S_contig10.513.1 vs. uniprot
Match: A0A7S2B6S7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B6S7_9STRA) HSP 1 Score: 114 bits (284), Expect = 8.490e-25 Identity = 66/192 (34.38%), Postives = 105/192 (54.69%), Query Frame = 1 Query: 250 AARIHDDMNLAVLAGMALMAAWAMWEGDRWTQYALTLFAAGYMVLDACWILCNPSGVKSPKTVLGHHVATLSVLVDPLLQPQHAFYTACALLVEFNTFLLILRRRVSWGGLLEVPFALSWVALRLIWYPFLGFYFTMCTFPETLKALYPERLVEWRFAVEEDRPVPMFLGSYLAWVGICIFQGWWSCALVRS 825
AA +HD++N+ + + + AA+++ G +T A Y++ D W++ P VKSP ++ HH+ TL+VL DP+ H Y +CALLVE NT L+ LRRR+ EV F +W+ALRLIW+P L ++F +FPE + P F + + P+ + + + I + Q +W+ AL S
Sbjct: 11 AADLHDNINVVITSLIFFSAAFSL-AGLPPGHTVVTFGATAYIIFDIVWVMSQPRIVKSPVEIILHHLGTLAVLYDPITVLNHQKYASCALLVEVNTVLITLRRRLGRPMWCEVSFLATWLALRLIWFPCLSYWFLCSSFPEVF--VMP-------FGIARENNPPIDTSTTVFFCLIVLLQFYWTFALGSS 192
BLAST of mRNA_Ecto-sp6_S_contig10.513.1 vs. uniprot
Match: A0A812KK43_9DINO (NMA1 protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812KK43_9DINO) HSP 1 Score: 111 bits (277), Expect = 3.640e-23 Identity = 70/207 (33.82%), Postives = 107/207 (51.69%), Query Frame = 1 Query: 250 AARIHDDMNLAVLAGMALMAAWAMWEGDRWTQYALTL-FAAGYMVLDACWILCNPSGVKSPKTVLGHHVATLSVLVDPLLQPQHAFYTACALLVEFNTFLLILRRRVSWGGLLEVPFALSWVALRLIWYPFLGFYFTMCTFPET--LKALYPERLVEWRFAVEEDRPVPMFLGSYLAWVGICIFQGWWSCALVRSYGRPAVVTRDKK 861
A +HD +N+A L + ++A A+ G+ + + + + A Y+V DA WI P VK+P +V+ HH+ TL V+V+P+ H + ALLVE NT LL LRR + E+ F L+W +RLIW+P LG TF T L AL P V E RP + + L++ + + Q +W+CA+ R + +K
Sbjct: 16 AGLLHDWVNVAALTAIFALSAAALESGEESSLHTIVIAVTAAYLVSDALWIALQPDMVKTPVSVILHHLVTLIVIVEPMFYESHRVNASRALLVEINTVLLTLRRLLGRPAWCELGFYLTWAVIRLIWFPALGTALLASTFGWTSPLAALPPPLTA----LVVEVRPPAIRSYASLSFAAVVMLQFYWTCAMGRGMCKSGANKESRK 218
BLAST of mRNA_Ecto-sp6_S_contig10.513.1 vs. uniprot
Match: A0A812JJT5_9DINO (Nicotinamide-nucleotide adenylyltransferase n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812JJT5_9DINO) HSP 1 Score: 111 bits (278), Expect = 5.880e-21 Identity = 70/207 (33.82%), Postives = 107/207 (51.69%), Query Frame = 1 Query: 250 AARIHDDMNLAVLAGMALMAAWAMWEGDRWTQYALTL-FAAGYMVLDACWILCNPSGVKSPKTVLGHHVATLSVLVDPLLQPQHAFYTACALLVEFNTFLLILRRRVSWGGLLEVPFALSWVALRLIWYPFLGFYFTMCTFPET--LKALYPERLVEWRFAVEEDRPVPMFLGSYLAWVGICIFQGWWSCALVRSYGRPAVVTRDKK 861
A +HD +N+A L + ++A A+ G+ + + + + A Y+V DA WI P VK+P +V+ HH+ TL V+V+P+ H + ALLVE NT LL LRR + E+ F L+W +RLIW+P LG TF T L AL P V E RP + + L++ + + Q +W+CA+ R + +K
Sbjct: 16 AGLLHDWVNVAALTAIFALSAAALESGEESSLHTIVIAVTAAYLVSDALWIALQPDMVKTPVSVILHHLVTLIVIVEPMFYESHRVNASRALLVEINTVLLTLRRLLGRPAWCELGFYLTWAVIRLIWFPALGTALLASTFGWTSPLAALPPPLTA----LVVEVRPPAIRSYASLSFAAVVLLQFYWTCAMGRGMCKSGANRESRK 218
BLAST of mRNA_Ecto-sp6_S_contig10.513.1 vs. uniprot
Match: A0A813G2R2_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G2R2_POLGL) HSP 1 Score: 100 bits (248), Expect = 1.330e-19 Identity = 64/193 (33.16%), Postives = 103/193 (53.37%), Query Frame = 1 Query: 250 AARIHDDMNLAVLAGMALMAAWAMWEGDR--WTQYALTLFAAGYMVLDACWILCNPSGVKSPKTVLGHHVATLSVLVDPLLQPQHAFYTACALLVEFNTFLLILRRRVSWGGLLEVPFALSWVALRLIWYPFLGFYFTMCTF--PETLKALYPERLVEWRFAVEEDRPVPMFLGSYLAWVGICIFQGWWSCAL 816
A +HD +N+ VL+ + ++A+ + G+ W A+ + A Y+ D WI NPS VK+PK +L HH TL V++D + H + AL+VE NT LL LRR + E+ F L+WV +RL+W+P LG T+ + L AL RL F + D PV + + +++ + + Q +W+ +
Sbjct: 34 AGLVHDWVNIGVLSLVFVLASIGILSGEDSVWHTVAIAVMCA-YLAGDVVWIAVNPSMVKTPKAILAHHAVTLIVIMDTIESASHRANASHALIVEINTVLLTLRRILGRPLWCEIGFYLTWVGIRLVWFPALGAALLASTWGRQDELAALLAPRLPALLFKMP-DPPVRSY--ASISFAVVVVLQFYWTIVI 222
BLAST of mRNA_Ecto-sp6_S_contig10.513.1 vs. uniprot
Match: A0A7S0ASE2_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0ASE2_9DINO) HSP 1 Score: 99.0 bits (245), Expect = 7.410e-19 Identity = 60/191 (31.41%), Postives = 98/191 (51.31%), Query Frame = 1 Query: 262 HDDMNLAVLAGMALMAAWAMWEG-DRWTQYALTLFAAGYMVLDACWILCNPSGVKSPKTVLGHHVATLSVLVDPLLQPQHAFYTACALLVEFNTFLLILRRRVSWGGLLEVPFALSWVALRLIWYPFLGFYFTMCTF--PETLKALYPERLVEWRFAVEEDRPVPMFLGSYLAWVGICIFQGWWSCALVRS 825
HD +N+ L + MA+ ++W G D + +F + Y+V D W+ P+ V++P +++ HHV TL V+ + H + ALLVE NT LL LRRR+ E F +W LRL+W+P L TF + L+A P L+ V+ P P+ + +++ + + Q +W+ L+RS
Sbjct: 28 HDWVNVVTLCLIFAMASASLWSGEDSLGHTMVVVFTSTYLVCDIVWVTLQPAIVRTPGSIVAHHVVTLVVIYGTVENVTHRVNASRALLVEINTVLLTLRRRLGRPVWCEAAFYATWGLLRLVWFPILSVAMLASTFGFADQLRASMPACLL-----VDVRSPPPIKAYASISFAAVVVLQYYWTFTLLRS 213 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig10.513.1 >prot_Ecto-sp6_S_contig10.513.1 ID=prot_Ecto-sp6_S_contig10.513.1|Name=mRNA_Ecto-sp6_S_contig10.513.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=268bp MAPNNKAVSAGTHPHGGGGQAFTGQKCPFASLAPQAASSGGSNRNPHAVLback to top mRNA from alignment at Ecto-sp6_S_contig10:968677..977332+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig10.513.1 ID=mRNA_Ecto-sp6_S_contig10.513.1|Name=mRNA_Ecto-sp6_S_contig10.513.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=8656bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:968677..977332+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:968677..977332+ >mRNA_Ecto-sp6_S_contig10.513.1 ID=mRNA_Ecto-sp6_S_contig10.513.1|Name=mRNA_Ecto-sp6_S_contig10.513.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=804bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:968677..977332+ (Ectocarpus species6 EcLAC_371)back to top |