mRNA_Ecto-sp6_S_contig10.498.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.498.1
Unique NamemRNA_Ecto-sp6_S_contig10.498.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.498.1 vs. uniprot
Match: A0A6H5JJQ2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJQ2_9PHAE)

HSP 1 Score: 1089 bits (2817), Expect = 0.000e+0
Identity = 613/672 (91.22%), Postives = 624/672 (92.86%), Query Frame = 1
Query:  415 KALGRLFARALQLHPRNPGLWIKAASWEFFDGGNASSARSLMQRGLRINPGARNLWLQYFRLEFSYVEKLMGRREILGLEAERGGAGDNGQGSDXXXXXXGRRGMDIPELEAEAGQSGGPSFKAVRKAAGAEGALGGGDGARPAPVMNDTARRFYKGAVPMAVFRAAVKAVPADVGFRAGFLRCCAEDFPVLSAEAAQSILTSIERDFPESCEAWEVRASYPQLAAEAAAAAGRDGGRLGFAVVQESVDTFEVAVEAVGASQPDMWVRYASFLRGRLEACEGAEGRKRGGGAVDGGKGGEMVGASAPXXXXXXXLAARLREVLARSVEIHLAGRAAPNDPPRSSTXXXXXXXXXRKERGGASLLATRGVAAPAEELEAPSRRREEDSREALSAGLADVCLALGEPEEALAALRAATGVLPRRPGPWLRRAALERRLAALGGDPGQPGWPASSGKKPSLGGSSSSAGAAGADVAAATLRAGIKAVPPAAPGYPDLWRELLASLVASGGGHSKKGKSAVAAAFREAVEACGGGSAGNNAQGEFLTGYVRWSAAVEGPDAARRALQWARRSFLLTGTGAAAAYGETIELERALGEEAGEEGARAKRVRELFEDSVDKFGRELPAIWEEYAQFEIHEGDVKRANAVRWRSQQQQQTDGRLGGGVTSSTGRKKQRWG 2430
            +ALGRLFARALQLHPRNPGLWIKAASWEFFDGGN SSARSLMQRGLRINPGARNLWLQYFRLEFSYVEKLMGRREILGLEAERGGAGDNGQG+DXXXX  GRRGMDIPELEAEAGQSGGPSFKAVRKAAGAEGALGG DGARPAPVMNDTARRFYKGAVPMAVFRAAVKAVPADVGFRAGFLRCCAEDFPVLS+EAAQSILTS+ERDFP+SCEAWEVRASYPQLAAEAAAA GRD GRLG AVVQES+DTFE+AVEAVGASQPDMWVRYASFLRGRLEACEGA+GRKRGGGAVDGGKGGEMVGASAPXXXXXXXLAARLREVLARSVEIHLAG AAPNDP     XXXXXX   RKERGGASLLATRGV+APAE LEAPSRRREEDSREALSAGLADVCLALGEPEEALAALRAATGVLPRRPGPWLRRAALERRLAALGGDPGQ G PAS                  ADVAAATLRAGIKAV PAAPGYPDLWRELLASLVASG GHSKKGK+AVAAAFREAVEACGGGSAGNNAQGEFL GYVRWSAAVEGPDAARRALQWARRSFLLTGTGAAAAYGE IELERALGEEAGEEG RAKRVRELFEDSVDKFGRELPAIWEEYAQFEI EG+VKRANAVRWRSQQQQ   GR GG VTSSTGRKKQRWG
Sbjct:    4 QALGRLFARALQLHPRNPGLWIKAASWEFFDGGNTSSARSLMQRGLRINPGARNLWLQYFRLEFSYVEKLMGRREILGLEAERGGAGDNGQGNDXXXXG-GRRGMDIPELEAEAGQSGGPSFKAVRKAAGAEGALGGDDGARPAPVMNDTARRFYKGAVPMAVFRAAVKAVPADVGFRAGFLRCCAEDFPVLSSEAAQSILTSMERDFPDSCEAWEVRASYPQLAAEAAAA-GRDAGRLGSAVVQESLDTFELAVEAVGASQPDMWVRYASFLRGRLEACEGAKGRKRGGGAVDGGKGGEMVGASAPXXXXXXXLAARLREVLARSVEIHLAGGAAPNDPXXXXXXXXXXXIAARKERGGASLLATRGVSAPAEGLEAPSRRREEDSREALSAGLADVCLALGEPEEALAALRAATGVLPRRPGPWLRRAALERRLAALGGDPGQAGRPASGXXXXXXXXXXXXXXXXXADVAAATLRAGIKAVSPAAPGYPDLWRELLASLVASGAGHSKKGKTAVAAAFREAVEACGGGSAGNNAQGEFLAGYVRWSAAVEGPDAARRALQWARRSFLLTGTGAAAAYGEAIELERALGEEAGEEGTRAKRVRELFEDSVDKFGRELPAIWEEYAQFEIQEGNVKRANAVRWRSQQQQTDSGRAGG-VTSSTGRKKQRWG 672          
BLAST of mRNA_Ecto-sp6_S_contig10.498.1 vs. uniprot
Match: A0A835YXJ8_9STRA (U3 small nucleolar RNA-associated protein 6-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXJ8_9STRA)

HSP 1 Score: 301 bits (770), Expect = 9.240e-87
Identity = 181/426 (42.49%), Postives = 246/426 (57.75%), Query Frame = 1
Query:    1 MADSVQYALDRMVVDLEDLRCRGIFSEAEVRAIVSRRKGFEYMLRRHEARRLDFMRYVQYELNLESLRALRTRRIEGXXXXXXXXXXXXXXXKGKAATADFCCVRLVRWIFDRAVMKFPGDVDIWLHYIDFAARQGQSKALGRLFARALQLHPRNPGLWIKAASWEFFDGGNASSARSLMQRGLRINPGARNLWLQYFRLEFSYVEKLMGRREILGL---EAERG-GAGDNGQGSDXXXXXXGRRGMDIPELEAEAGQSGGPSFKAVRKAAGAEG-ALGGGDGARPAPVMNDTARRFYKGAVPMAVFRAAVKAVPADVGFRAGFLRCCAEDFPVLSAEAAQSILTSIERDFPESCEAWEVRASYPQLAAEAAAAAGRDGGRLGFAVVQES--VDTFEVAVEAVGASQPDMWVRYASFLRGRLEACE 1257
            M D+VQ  +DRMV DLED++ +G+F+  EVRAI +RR+  EY+ RR +AR++DF+RY++YELNLE LR +R +                                           KFPGDV + L +IDFAA+Q  +K L R+F RALQLHP N GLWIKAASWEFFD  NA +AR L+QR LRIN   + LW+QYFRLE+ Y++K++GR+++LGL   ++E G G GD G             G+DIPE++ E G+S GP F  V  A   EG A      A    VM+D  ++FYKG VP+A+FRAA KA+P D+  R   L+ C  +FP LS     +IL S++ DFP S EAW +RA +P L  +     G +   L   V  E   +  FE AV++      D+W++Y+ FL  RL   +
Sbjct:    1 MGDTVQAVMDRMVPDLEDMQRKGVFTREEVRAIAARRRDHEYLARRRQARKVDFLRYIEYELNLEILRKIRRK-------------------------------------------KFPGDVSLCLQHIDFAAKQTSTKILSRIFGRALQLHPHNAGLWIKAASWEFFDCANAVAARVLLQRALRINGVNQRLWVQYFRLEWCYLQKVIGRQQVLGLIEDDSEGGEGVGDAG-------------GLDIPEVQGE-GESSGPDFSQVAAAEQEEGKASQKKRSASRQVVMSDATKQFYKGGVPLAIFRAARKALPDDIALRGHCLQVCCTEFPELSKHVQSAILDSLKEDFPASAEAWALRAQHPLLVLQ-----GYEDEDLAAVVDAEGQCIQAFEAAVKSSAGDGADIWLQYSQFLHARLSEAD 364          
BLAST of mRNA_Ecto-sp6_S_contig10.498.1 vs. uniprot
Match: A0A6H5K8P6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8P6_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 3.040e-70
Identity = 130/142 (91.55%), Postives = 133/142 (93.66%), Query Frame = 1
Query:    1 MADSVQYALDRMVVDLEDLRCRGIFSEAEVRAIVSRRKGFEYMLRRHEARRLDFMRYVQYELNLESLRALRTRRIEGXXXXXXXXXXXXXXXKGKAATADFCCVRLVRWIFDRAVMKFPGDVDIWLHYIDFAARQGQSKALG 426
            MADSVQYALDRMVVDLEDLRCRGIFSEAEVRAIVSRRKGFEYMLRRHEARRLD+MRYV+YELNLESLRALRTRR+EG    XXXXXXXXX  KGKAATADFCCVRLVRWIFDRAVMKFPGDVDIWLHYIDF ARQGQSK  G
Sbjct:   39 MADSVQYALDRMVVDLEDLRCRGIFSEAEVRAIVSRRKGFEYMLRRHEARRLDYMRYVEYELNLESLRALRTRRVEGGASGXXXXXXXXXTKKGKAATADFCCVRLVRWIFDRAVMKFPGDVDIWLHYIDFTARQGQSKVRG 180          
BLAST of mRNA_Ecto-sp6_S_contig10.498.1 vs. uniprot
Match: A0A433Q7W8_9FUNG (U3 small nucleolar RNA-associated protein 6-domain-containing protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433Q7W8_9FUNG)

HSP 1 Score: 223 bits (568), Expect = 7.530e-61
Identity = 138/358 (38.55%), Postives = 202/358 (56.42%), Query Frame = 1
Query:    1 MADSVQYALDRMVVDLEDLRCRGIFSEAEVRAIVSRRKGFEYMLRRHEARRLDFMRYVQYELNLESLRALRTRRIEGXXXXXXXXXXXXXXXKGKAATADFCCVRLVRWIFDRAVMKFPGDVDIWLHYIDFAARQGQSKALGRLFARALQLHPRNPGLWIKAASWEFFDGGNASSARSLMQRGLRINPGARNLWLQYFRLEFSYVEKLMGRREILGLEA------ERGGAGDNGQGSDXXXXXXGRRGMDIPELEAEAGQSGGPSFKAVRKAAGAEGALGGGDGARPAPVMNDTARRFYKGAVPMAVFRAAVKAVPADVGFRAGFLRCCAEDFPVLSAEAAQSILTSIERDFPESCEA 1056
            MAD+VQY L++MV +LEDL  +GIFS+AE+++IV +R  FEY L+R  ++++D++RY +YE+NLE+LR  R  R++                  K + +D+  VR + +IF+R + KF GDV +WL YI+FA   G S+ LG++FA A+Q+HP  P LWI AASWEF +  N  +AR LMQRGLR+N  + +LW +YFRLE  YVEK+  RR+ILG++       E   AG      D         G +  +   E G+ G     AVRK    E ++           + +      +G +   V+R A+ A+P ++ FR  F+   A+       E  Q I  SI RDFP++ EA
Sbjct:    1 MADTVQYYLEQMVPELEDLEQKGIFSKAEIKSIVKKRTKFEYALKRRISKKVDYLRYAEYEMNLEALRKKRKVRLD--------------IKSNKTSLSDYAGVRRIYFIFERVLRKFKGDVALWLQYIEFAKGNGASRTLGKIFASAIQMHPTKPSLWIMAASWEFEENANIVAARVLMQRGLRLNSTSTSLWHEYFRLELVYVEKIKARRKILGIDQRSQSTLEELEAGQTDANDDNMIMLPKITGEEFVDEADETGEKG-----AVRKM---EESM--------VEALKENNNPVLEGLLGRIVYRNAIVAIPNNLPFRKKFIDIYADFSDTEMGE--QEIYESIRRDFPQNTEA 326          
BLAST of mRNA_Ecto-sp6_S_contig10.498.1 vs. uniprot
Match: A0A6G0XVP7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XVP7_9STRA)

HSP 1 Score: 227 bits (578), Expect = 4.180e-60
Identity = 136/347 (39.19%), Postives = 191/347 (55.04%), Query Frame = 1
Query:    1 MADSVQYALDRMVVDLEDLRCRGIFSEAEVRAIVSRRKGFEYMLRRHEARRLDFMRYVQYELNLESLRALRTRRIEGXXXXXXXXXXXXXXXKGKAATADFCCVRLVRWIFDRAVMKFPGDVDIWLHYIDFAARQGQSKALGRLFARALQLHPRNPGLWIKAASWEFFDGGNASSARSLMQRGLRINPGARNLWLQYFRLEFSYVEKLMGRREILGLEAERGGAGDNGQGSDXXXXXXGRRGMDIPELEAEAGQSGGPSFKAVRKAAGAEGALGGGDGARPAPVMNDTARRFYKGAVPMAVFRAAVKAVPADVGFRAGFLRCCAEDFPVLSAEAAQSILTSIERDFP 1041
            MAD+VQY +++M+ +LEDL+   IF + E+R IV +R+ FEY ++R   R++D +RY++YE+NL++LR  R +R+                   K + +DF  ++ V  IFDRA+MK  GDVD+WL +I F    G +K + +LF +ALQLHPRN  +WI+AASWEF    N  SAR LMQR +RINP ++ LW +YFRLE  YV+KL  RRE+LGL+A+        Q S           +DI  +E E   SG  +     + +  E                 +      GA+P  VF+ AV+A+P D  FR  FL  C    PV +   A  IL S   DFP
Sbjct:    1 MADAVQYIMEKMIPELEDLQTLNIFDKDEIRQIVQKRRDFEYTMKRTPLRKVDCLRYIEYEINLDALRRQRKKRM----------------GLQKKSLSDFAGMQRVHNIFDRALMKHRGDVDLWLQHIAFCKNTGSTKIMSKLFTKALQLHPRNEAIWIEAASWEFASNLNVDSARVLMQRSIRINPHSKKLWHEYFRLELLYVQKLRARREVLGLDAKP-------QEST----------LDIAPVEGEEVASGAATDAVAEETSAVE----------------KSRHEILHGAIPKIVFQNAVQAIPQDAVFRLDFLTICNLFPPVYAKPVADVILESAGADFP 298          
BLAST of mRNA_Ecto-sp6_S_contig10.498.1 vs. uniprot
Match: A0A485KQ44_9STRA (Aste57867_10082 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KQ44_9STRA)

HSP 1 Score: 225 bits (574), Expect = 1.660e-59
Identity = 141/354 (39.83%), Postives = 193/354 (54.52%), Query Frame = 1
Query:    1 MADSVQYALDRMVVDLEDLRCRGIFSEAEVRAIVSRRKGFEYMLRRHEARRLDFMRYVQYELNLESLRALRTRRIEGXXXXXXXXXXXXXXXKGKAATADFCCVRLVRWIFDRAVMKFPGDVDIWLHYIDFAARQGQSKALGRLFARALQLHPRNPGLWIKAASWEFFDGGNASSARSLMQRGLRINPGARNLWLQYFRLEFSYVEKLMGRREILGLEAERGGAGDNGQGSDXXXXXXGRRGMDIPELEAEAGQSGGPSFKAVRKAAGAEGALGGGDGARPAPVMNDTARRFYKGAVPMAVFRAAVKAVPADVGFRAGFLRCCAEDFPVLSAE-AAQSILTSIERDFPESCEAW 1059
            MAD+VQY +++M+ +LEDL+   IFS+ EVR IV +R+ FEY ++R   R++D +RY++YELNL++LR  R +R+                   K+  +D   +  V  IFDRA++K  GDVD+WL +I F   QG +K L  LF  ALQ+HPRN  LWI+AASWEF    N  SAR LMQR +RINP ++ LWL+YFRLE  YV+KL  RRE+LGL+ ++                     +DI  +E E   +     KA    A A  A+             D+ R    GA+P  VF  AV+A+P+D  FR  FL      FP   A+  A +IL S   +FP     W
Sbjct:    1 MADAVQYMMEKMIPELEDLQHLKIFSKEEVRQIVQKRRDFEYTMKRTPLRKVDCLRYIEYELNLDALRRQRKKRM----------------GLKKSTLSDHTGISRVHNIFDRALLKHRGDVDLWLQHIAFCKNQGSTKILSLLFTHALQVHPRNEALWIEAASWEFATNLNVDSARVLMQRSIRINPHSQKLWLEYFRLELLYVQKLRARREVLGLDDKKA--------------LPKELSLDIAPVEGEEDDA----SKAADAVADATSAV------------EDSRREILLGAIPKIVFHNAVQAIPSDAAFRLAFLDIT-NLFPSAYAKPVADAILASATMEFPTDAAVW 307          
BLAST of mRNA_Ecto-sp6_S_contig10.498.1 vs. uniprot
Match: A0A433A2E5_9FUNG (U3 small nucleolar RNA-associated protein 6-domain-containing protein n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433A2E5_9FUNG)

HSP 1 Score: 223 bits (569), Expect = 7.070e-59
Identity = 156/419 (37.23%), Postives = 226/419 (53.94%), Query Frame = 1
Query:    1 MADSVQYALDRMVVDLEDLRCRGIFSEAEVRAIVSRRKGFEYMLRRHEARRLDFMRYVQYELNLESLRALRTRRIEGXXXXXXXXXXXXXXXKGKAATADFCCVRLVRWIFDRAVMKFPGDVDIWLHYIDFAARQGQSKALGRLFARALQLHPRNPGLWIKAASWEFFDGGNASSARSLMQRGLRINPGARNLWLQYFRLEFSYVEKLMGRREILGLEA------ERGGAGDNGQGSDXXXXXXGRRGMDIPELEAEAGQSGGPSFKAVRKAAGAEGALGGGDGARPAPVMNDTARRFYKGAVPMAVFRAAVKAVPADVGFRAGFLRCCAEDFPVLSAEAAQSILTSIERDFPESCEAWEVRASYPQLAAEAAAAAGR-DGGRLGFAV-VQESVDTFEVAVEAVGASQPDMWVRYASFL 1233
            MAD+VQY L++MV +LEDL  +GIFS+AE+++IV +R  FEY L+R  ++++D++RY +YE+NLE+LR  R  R++                  K + +D+  VR + +IF+R + KF GDV +WL YI+FA   G S+ LG++FA A+Q+HP  P LWI AASWEF +  N  +AR LMQRGLR+N  + +LW +YFRLE  YVEK+  RR+ILG++       E   AG      D         G +  +   E G+ G     AVRK    E ++           + +      +G +   V+R A+ A+P ++ FR  F+   A+       E  Q I  SI RDFP++ EA     SY  LAA   + A   D     F   ++  V+ F   VE +  S+  MW  Y  FL
Sbjct:    1 MADTVQYYLEQMVPELEDLEQKGIFSKAEIKSIVKKRTKFEYALKRRISKKVDYLRYAEYEMNLEALRKKRKVRLD--------------IKSNKTSLSDYAGVRRIYFIFERVLRKFKGDVALWLQYIEFAKGNGASRTLGKIFASAIQMHPTKPSLWIMAASWEFEENANIVAARVLMQRGLRLNSTSTSLWHEYFRLELVYVEKIKARRKILGIDQRSQSTLEELEAGQTDANDDNMIMLPKITGEEFVDEADETGEKG-----AVRKM---EESM--------VEALKENNNPVLEGLLGRIVYRNAIVAIPNNLPFRKKFIDIYADFSDTEMGE--QEIYESIRRDFPQNTEA----RSY--LAARHLSRANEVDVENPEFVKGLRSCVEEFGRCVEELPTSE--MWEHYTRFL 379          
BLAST of mRNA_Ecto-sp6_S_contig10.498.1 vs. uniprot
Match: A0A1Y1Y702_9FUNG (Uncharacterized protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y702_9FUNG)

HSP 1 Score: 223 bits (567), Expect = 1.390e-58
Identity = 150/418 (35.89%), Postives = 227/418 (54.31%), Query Frame = 1
Query:    1 MADSVQYALDRMVVDLEDLRCRGIFSEAEVRAIVSRRKGFEYMLRRHEARRLDFMRYVQYELNLESLRALRTRRIEGXXXXXXXXXXXXXXXKGKAATADFCCVRLVRWIFDRAVMKFPGDVDIWLHYIDFAARQGQSKALGRLFARALQLHPRNPGLWIKAASWEFFDGGNASSARSLMQRGLRINPGARNLWLQYFRLEFSYVEKLMGRREILGLEAERGGAGDNGQGSDXXXXXXGRRGMD---IPELEAEAGQSGGPSFKAVRKAAGAEGALGGGDGARPAPVMNDTARRFYKGAVPMAVFRAAVKAVPADVGFRAGFLRCCAEDFPVL--SAEAAQSILTSIERDFPESCEAWEVRASYPQLAAEAAAAAGRDGGRLGFAV-VQESVDTFEVAVEAVGASQPDMWVRYASFLR 1236
            MAD+VQY L+ M+ +LEDL  + IF++ E+R+IV +R  FEY L+R   +++D++RY++YELNLE+LR  R  R++                KGK + +D+   R V +IF+RA++KF GDV +WL ++DFA R   +K L ++FARA+QLHP  P LWI AASWEF D  N ++AR L+QRGLR+NP ++ LWL+Y RLE  Y+ K+  RR ILG+  +     D  +      XXX     D   +P L+ E         +  R+   ++G +           +      F  GAV + V++ A+K++P D+ FR  FL    E F  +  +    ++I  SI+ DFP    A   RA Y +        AG D   + +   V++    F   ++ +G     MW +Y  FL+
Sbjct:    1 MADTVQYHLENMIPELEDLEKKKIFNKEEIRSIVKKRTNFEYALKRRSPKKIDYLRYIEYELNLENLRKKRKARLD---------------IKGKPSVSDYAGPRRVNFIFERALLKFKGDVPLWLQWVDFAKRNKMNKLLSKIFARAIQLHPAKPSLWIMAASWEFEDNLNTTAARILLQRGLRLNPESQELWLEYVRLELVYMAKIRERRRILGILKK-----DQAKPEVEVEXXXXXXXXDMIVLPTLDEEE------EMEPKREITISDGLI---------QTLKAENNAFLSGAVALIVYQNAIKSIPNDLDFRRKFL----EVFQTIPGTESGQETIYESIKDDFPHDESA---RALYIEKNL-----AGVDPNSVEYINGVKKCTQGFSEVIQELGTGT--MWEKYCEFLK 369          
BLAST of mRNA_Ecto-sp6_S_contig10.498.1 vs. uniprot
Match: W4H669_9STRA (Uncharacterized protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H669_9STRA)

HSP 1 Score: 219 bits (559), Expect = 1.650e-57
Identity = 134/355 (37.75%), Postives = 191/355 (53.80%), Query Frame = 1
Query:    1 MADSVQYALDRMVVDLEDLRCRGIFSEAEVRAIVSRRKGFEYMLRRHEARRLDFMRYVQYELNLESLRALRTRRIEGXXXXXXXXXXXXXXXKGKAATADFCCVRLVRWIFDRAVMKFPGDVDIWLHYIDFAARQGQSKALGRLFARALQLHPRNPGLWIKAASWEFFDGGNASSARSLMQRGLRINPGARNLWLQYFRLEFSYVEKLMGRREILGLEAERGGAGDNGQGSDXXXXXXGRRGMDIPELEAEAGQSGGPSFKAVRKAAGAEGALGGGDGARPAPVMNDTARR-FYKGAVPMAVFRAAVKAVPADVGFRAGFLRCCAEDFPVLSAE-AAQSILTSIERDFPESCEAW 1059
            MAD+VQY +++M+ +LEDL+   IF++ EVR IV +R+ FEY ++R   R++D +RY++YELNL++LR  R +R+                   K + +D   ++ V  IFDRA+MK  GDVD+WL +I F    G SK L +LF  ALQLHPRN  +WI+AA+WEF    N  SAR L+QR +RINP ++ LWL+YFRLEF YV+KL  RRE+LGL+ E+                     +DI  ++ E                         D    +    + +R+   +GA+P  VFR A++A+P +  FR  F+  C   FP       A+ IL S   DFP     W
Sbjct:    1 MADAVQYVMEKMIPELEDLQHLQIFTKDEVRQIVQKRRDFEYTMKRTPLRKVDCLRYIEYELNLDALRRQRKKRM----------------GLTKLSLSDHSGMQRVHNIFDRALMKHRGDVDLWLQHIAFCKNTGSSKLLSKLFTNALQLHPRNEAIWIEAAAWEFATNLNVDSARVLLQRSIRINPHSQKLWLEYFRLEFLYVQKLRTRREVLGLDTEK--------------TKPKELSLDIAPVDGEDAPI---------------------DATTDSESSTEKSRQEILQGAIPKIVFRNAIQAIPQNAAFRLAFIAIC-NLFPATYGHPVAKFILDSTLADFPNDATVW 303          
BLAST of mRNA_Ecto-sp6_S_contig10.498.1 vs. uniprot
Match: A0A024UHP5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UHP5_9STRA)

HSP 1 Score: 218 bits (556), Expect = 4.410e-57
Identity = 136/354 (38.42%), Postives = 194/354 (54.80%), Query Frame = 1
Query:    1 MADSVQYALDRMVVDLEDLRCRGIFSEAEVRAIVSRRKGFEYMLRRHEARRLDFMRYVQYELNLESLRALRTRRIEGXXXXXXXXXXXXXXXKGKAATADFCCVRLVRWIFDRAVMKFPGDVDIWLHYIDFAARQGQSKALGRLFARALQLHPRNPGLWIKAASWEFFDGGNASSARSLMQRGLRINPGARNLWLQYFRLEFSYVEKLMGRREILGLEAERGGAGDNGQGSDXXXXXXGRRGMDIPELEAEAGQSGGPSFKAVRKAAGAEGALGGGDGARPAPVMNDTARRFYKGAVPMAVFRAAVKAVPADVGFRAGFLRCCAEDFPVL-SAEAAQSILTSIERDFPESCEAW 1059
            MAD+VQY +++M+ +LEDL+   IF++ EVR IV +R+ FEY ++R   R++D +RY++YELNL++LR  R +R+                   K +++D   ++ V  IFDRA+MK  GDVD+WL +I F    G SK L +LF  ALQLHPRN  LWI+AASWEF    N  SAR LMQR +R+NP ++ LWL+YFRLEF YV+KL  RRE+LGL+A+                      +DI  ++ E    G     A+ ++A                 ++ +     +GA+P  V+R A  A+P D  FR  F+   +  FP    +  A+ IL S   DFP     W
Sbjct:    1 MADAVQYVMEKMIPELEDLQQLQIFTKEEVRQIVQKRRDFEYTMKRTPLRKVDCLRYIEYELNLDALRRQRKKRL----------------GLQKQSSSDHTGMQRVHNIFDRALMKHRGDVDLWLQHIAFCKNTGSSKLLSKLFTNALQLHPRNETLWIEAASWEFSTNLNVDSARVLMQRSIRMNPHSKKLWLEYFRLEFLYVQKLRTRREVLGLDADT--------------TKPLELSLDIAPVKGE----GAAQVDAIAESA-------------KESAVDKSRHEILQGAIPKIVYRNASHAIPNDAAFRLQFVSI-SNLFPATYGSPVAKVILESSLADFPTDAAVW 306          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJQ2_9PHAE0.000e+091.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YXJ8_9STRA9.240e-8742.49U3 small nucleolar RNA-associated protein 6-domain... [more]
A0A6H5K8P6_9PHAE3.040e-7091.55Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A433Q7W8_9FUNG7.530e-6138.55U3 small nucleolar RNA-associated protein 6-domain... [more]
A0A6G0XVP7_9STRA4.180e-6039.19Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485KQ44_9STRA1.660e-5939.83Aste57867_10082 protein n=1 Tax=Aphanomyces stella... [more]
A0A433A2E5_9FUNG7.070e-5937.23U3 small nucleolar RNA-associated protein 6-domain... [more]
A0A1Y1Y702_9FUNG1.390e-5835.89Uncharacterized protein n=1 Tax=Basidiobolus meris... [more]
W4H669_9STRA1.650e-5737.75Uncharacterized protein n=10 Tax=Aphanomyces astac... [more]
A0A024UHP5_9STRA4.410e-5738.42Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:826091..831839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score1406.0
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D8LSS2
Model size2854
KEGG koko:K14557
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034388,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Exons4
EggNOG free text desc.snoRNA binding
EggNOG OGsCOG5191@1,KOG2396@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-15_002810.1
Cds size2433
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348703.1285734-CDS-Ecto-sp6_S_contig10:826090..8261711682348703.1285734-CDS-Ecto-sp6_S_contig10:826090..826171Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 826091..826171 +
1682348703.1403487-CDS-Ecto-sp6_S_contig10:827525..8278611682348703.1403487-CDS-Ecto-sp6_S_contig10:827525..827861Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 827526..827861 +
1682348703.149342-CDS-Ecto-sp6_S_contig10:828306..8301301682348703.149342-CDS-Ecto-sp6_S_contig10:828306..830130Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 828307..830130 +
1682348703.167631-CDS-Ecto-sp6_S_contig10:831226..8314181682348703.167631-CDS-Ecto-sp6_S_contig10:831226..831418Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 831227..831418 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348703.1805038-UTR-Ecto-sp6_S_contig10:831418..8318391682348703.1805038-UTR-Ecto-sp6_S_contig10:831418..831839Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 831419..831839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.498.1prot_Ecto-sp6_S_contig10.498.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 826091..831418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.498.1

>prot_Ecto-sp6_S_contig10.498.1 ID=prot_Ecto-sp6_S_contig10.498.1|Name=mRNA_Ecto-sp6_S_contig10.498.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=811bp
MADSVQYALDRMVVDLEDLRCRGIFSEAEVRAIVSRRKGFEYMLRRHEAR
RLDFMRYVQYELNLESLRALRTRRIEGGGSGGQQRNKKKKTKKGKAATAD
FCCVRLVRWIFDRAVMKFPGDVDIWLHYIDFAARQGQSKALGRLFARALQ
LHPRNPGLWIKAASWEFFDGGNASSARSLMQRGLRINPGARNLWLQYFRL
EFSYVEKLMGRREILGLEAERGGAGDNGQGSDDDDDDGGRRGMDIPELEA
EAGQSGGPSFKAVRKAAGAEGALGGGDGARPAPVMNDTARRFYKGAVPMA
VFRAAVKAVPADVGFRAGFLRCCAEDFPVLSAEAAQSILTSIERDFPESC
EAWEVRASYPQLAAEAAAAAGRDGGRLGFAVVQESVDTFEVAVEAVGASQ
PDMWVRYASFLRGRLEACEGAEGRKRGGGAVDGGKGGEMVGASAPAAAAA
AALAARLREVLARSVEIHLAGRAAPNDPPRSSTTAVTAAIAARKERGGAS
LLATRGVAAPAEELEAPSRRREEDSREALSAGLADVCLALGEPEEALAAL
RAATGVLPRRPGPWLRRAALERRLAALGGDPGQPGWPASSGKKPSLGGSS
SSAGAAGADVAAATLRAGIKAVPPAAPGYPDLWRELLASLVASGGGHSKK
GKSAVAAAFREAVEACGGGSAGNNAQGEFLTGYVRWSAAVEGPDAARRAL
QWARRSFLLTGTGAAAAYGETIELERALGEEAGEEGARAKRVRELFEDSV
DKFGRELPAIWEEYAQFEIHEGDVKRANAVRWRSQQQQQTDGRLGGGVTS
STGRKKQRWG*
back to top

mRNA from alignment at Ecto-sp6_S_contig10:826091..831839+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.498.1 ID=mRNA_Ecto-sp6_S_contig10.498.1|Name=mRNA_Ecto-sp6_S_contig10.498.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5749bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:826091..831839+ (Ectocarpus species6 EcLAC_371)
ATGGCGGACAGCGTGCAGTATGCCCTCGATCGCATGGTCGTAGATCTGGA GGACCTGAGATGTCGAGGGATATTCTCGGAGGTGAGGGAGGAATCGGAGG TGAACTCGCCGGCTGCTGTGGTGTGACTGGACATGACTCGTTTGCCTCCA CAGAGGGAGAGGGCACAGCACTTCTGTGCCGTGGGCTCCGTTACGATTTC TAGGGCAGAGAATGGGGCCGGTGAAACGATTTCAGTGTTCGTTGAGTAGT GTGTAGGACAGGCAAAACCCTCGTTTCGTTTTAAAACCGGACGCCAATAA CAGCGTATGCTGGAAGACACAGGTGCGGCCACCGAGGAGCTGCCATTGTT GAGGACTGCTTCTCTCTCTCTCTCTTTCTCTCTCTCAGCCTCCGGCTCGC CCGAGATGTCTACAGAGATGTGTCGTCTACAGAGATGTGTCGTTTCTGCC TGCAAAAACCGTGCCTGCTTCCAGTCCGACAACCGTACTCTGGCCCTCAT CCATGCGTCATGCTGGGAATAATGTCTTCCACTGCTCCTGCAACAAAGCA CGAGGGTGGTCTACTACTGCTGCCGCATGCCTCTAGTTCGCGCGGGGTTG AATACCCCTTGGCTTGGCGTGGGTAAACATGTCCGTACCGTTGTGGACCC CTCTTGGTTATTAGTTTGGATTGGACATGCTCGATGGCAACGTCAATACA CGGGCAGCCAGCCCAAAGCGTTGCAGGGGTTAGCAGAGCTTCCTCACAGA CAGCAACCCAGACAGCTGCACCTCGAGAAAAGCAGCACGGTACGAATACC GCACGGACATGTCCACGAGGAACGTCGACGCAACGATGTGTGTACATGTG TGCCGAACTGCACGATGCCGTTTGCGATAGTCGGCGGCAGTTGTAGACAA GAATAAGACACGATGAATAAAACTGTACACTACAATACGGTGGCTCTCTG TGATACTTACGCTCATGTGTGAACCCTGGGTGTTTGACGTGCTGTTTGTG TCCCTTGGCCCAACCTCGTGGCCCTCTCACCCGTACCGTTCACCTTTTTT GGGAGAGGGCGGTGATTCATCTGGAGGCCACCCTCCTGCTTTGGTGCCGA CGCTACACATTGTTTTGGACGGCAGTCGGAGAAGTAAAAGAACGAAACAT GCGCCTCTCCCAGGTAGCACACGGCACGCAACCTGTTGCCTGAGGAAAAC CTCTGCACCCCTTACTTCCCCCAGAGCGTGTGGGCTGTTGTCGCTGTCGT GTTGCACAGAGCACGCTACCGAATTCCACACCATCTTTATACATACACGA CCCGAGAGCAGCGATCACCCGTTCTCTCCCGGAAACGAAACCCGACGGCA TACAGGTGTTTTCAGTTTGGCCACCACACGCGTCTTACCCACCCACCAAC CCACCCACCAACCCACCCACCCCCAACCGGCGCAGGCCGAGGTCCGCGCC ATCGTCTCCAGGAGAAAGGGCTTCGAGTACATGCTTCGGCGGCACGAGGC CCGTCGCCTGGACTTCATGCGCTACGTCCAGTACGAGCTCAACCTCGAGT CCCTGCGCGCCCTGCGCACGAGACGGATCGAGGGCGGCGGCAGCGGCGGC CAGCAGCGCAACAAGAAGAAGAAGACCAAGAAGGGGAAGGCCGCCACGGC CGACTTCTGCTGCGTGCGCCTGGTGCGGTGGATCTTCGACCGCGCCGTGA TGAAGTTTCCCGGGGACGTGGACATCTGGCTCCACTACATCGACTTCGCC GCCCGTCAGGGGCAGAGCAAGGTGGGGGCGTAGTATCGTCGTTGACGAGC GAGATGAGAGGGGCAGAGGAAACGACTAGACTGAGTTTTTGTCAGCAACA ATGTTTTTCGTTGACTTCGCCGCCGGTCAGGGGCCTTGAGCGGGAGGAGG CGTAATACCGGCGTTAGCGAGCGAGAGGGGGAACGGGCGGAGGAAACGTC CAAAACATTCTGTCGTCAGGACCAACCGAGTACCGGAAGCCTTCGTGATG GTACTGTCAGCAGGAAGGAAATGCTCGAACGGGCCCTCATCCTCAACTCA CTACCACATTCAGGAGTTTCTTTCCGCAGCACACCAAAGACCCCTTGCTT CCTTTGGTCTCCGTAAATACGCGGCAAGAAATCGAACATTGTCCTTCTTC TCCCCCTTCCCTTCCTCCCCACAACGACGGCCACCACCCTACATTGCGCA CAATATAACACCGCAGGCGCTGGGCAGGCTCTTCGCCCGTGCCCTCCAGC TCCACCCCCGCAACCCCGGGCTCTGGATCAAGGCGGCGAGCTGGGAGTTC TTCGACGGCGGCAACGCCTCGTCCGCTCGCTCCCTCATGCAGAGGGGGCT GCGCATCAACCCGGGCGCCCGGAACCTCTGGCTTCAGTACTTCCGCCTCG AGTTCTCCTACGTGGAGAAGCTCATGGGCAGGAGGGAGATCCTGGGCCTG GAAGCGGAACGGGGCGGGGCCGGCGACAACGGGCAGGGGAGCGATGATGA TGATGATGATGGCGGGAGGCGAGGCATGGACATACCGGAGCTCGAGGCTG AAGCGGGACAGAGCGGGGGTCCCAGCTTCAAGGCCGTGAGGAAAGCGGCG GGAGCGGAAGGAGCGCTGGGGGGTGGCGACGGCGCGCGTCCGGCGCCGGT GATGAACGACACCGCCCGGCGGTTCTACAAGGGGGCCGTCCCGATGGCCG TGTTTCGGGCTGCCGTCAAGGCCGTCCCCGCGGACGTTGGGTTCCGAGCG GGGTTTCTGCGGTGCTGCGCGGAGGACTTTCCGGTGCTGTCGGCCGAGGC GGCGCAATCAATCCTGACCTCCATCGAGAGAGACTTTCCCGAGAGCTGCG AGGCGTGGGAGGTGCGGGCGTCGTACCCACAGCTCGCGGCGGAGGCGGCG GCGGCGGCCGGTCGCGATGGCGGTCGGTTAGGGTTCGCTGTCGTGCAGGA GAGCGTGGACACGTTCGAAGTCGCCGTTGAGGCGGTCGGGGCGTCGCAGC CGGACATGTGGGTACGCTACGCGTCGTTCTTGCGGGGAAGGCTCGAGGCC TGCGAGGGGGCCGAAGGAAGGAAGAGAGGCGGCGGCGCGGTCGACGGGGG CAAAGGCGGTGAGATGGTTGGGGCTTCGGCACCGGCCGCCGCCGCGGCCG CCGCTCTCGCGGCTCGGCTCCGGGAGGTGCTGGCGCGTTCGGTGGAGATT CACCTCGCCGGCCGCGCCGCACCGAACGATCCGCCGCGGAGTTCCACCAC CGCCGTTACCGCGGCAATCGCAGCCCGCAAGGAGAGAGGAGGCGCGTCGC TGCTCGCGACGAGAGGGGTCGCGGCCCCAGCCGAGGAGCTCGAGGCGCCG AGTCGGCGCCGGGAGGAAGACTCCCGAGAGGCCCTGTCCGCGGGGCTGGC GGACGTGTGCCTGGCGCTGGGCGAGCCCGAGGAGGCTCTGGCGGCGCTCC GCGCCGCGACCGGGGTGCTGCCCCGGCGGCCGGGACCCTGGCTCCGCCGC GCGGCGCTGGAGCGGCGGCTCGCGGCCTTGGGCGGCGACCCCGGGCAACC CGGGTGGCCGGCCAGCAGTGGAAAGAAGCCCAGCCTTGGAGGTAGCAGCA GTAGTGCTGGCGCTGCTGGTGCCGACGTGGCCGCGGCGACCCTGCGGGCG GGGATAAAGGCCGTCCCGCCGGCGGCCCCGGGGTACCCCGACCTGTGGCG GGAGTTGCTCGCGTCTCTGGTGGCCTCGGGGGGTGGGCACAGCAAAAAGG GAAAAAGTGCGGTGGCAGCGGCGTTCCGGGAGGCCGTCGAGGCATGTGGG GGAGGGTCCGCAGGGAACAACGCGCAGGGGGAGTTTTTGACCGGGTACGT CCGCTGGAGCGCGGCCGTGGAGGGTCCTGACGCCGCCCGCCGGGCTCTGC AGTGGGCAAGGCGTTCCTTCTTGCTCACGGGGACCGGGGCGGCGGCGGCG TACGGCGAGACGATCGAGCTGGAGAGGGCGCTGGGGGAGGAGGCGGGGGA GGAAGGGGCAAGGGCGAAGCGCGTGCGGGAACTATTTGAGGTGATGATGA TGATGATGGATCCATTGGTGCGCCGCGAAGGCGTTCAAGGAAGCCGCAGG TTGCGTAAGATATCACCCCCCGTCCTGGGTCGATATTTAGAGCTCGGTTA CGCTACGACGAAGAGGGTTGCCAAAATCGAATGATACGTTGTTGGAATGC TGTCGACGAGACGGTTCGGCAGAGCCACTTGCCGTGCTGCCGCGTGTATT GTGCAACACACGGTAGTAACTGGTCTGTTCCGGAGGTGTGGTGGGATGTT GTTGAGGAGCGAACAAGTTGGCTGAAAAAACTCTGCAACAGGTTTTTCTG GGCTGTAACCGCGGGTAACTGTTTAGTTTTTCTGCGATGCCGTCTCTGAA TACCGTAGTTGTGCGTGTTATCGCACCCCCGTGTTTGCGTTTTTCTGTAG CGTATTTCTCCACAACTAGGAGAGTGCGAACACAACCTGATACCTCTCAG GAAAGCCCTCGACGAGATGTTTCCAAAACCATCCTTTTCGGAGGTAATAC CTCCCTGGTCGTGGAGAAATACGCTACAGAAGAACGCTACCACGGGGGTG CGATAAATAACACGCACAATTACGATATTTTGACCCTTCACTTCTCCGTA TCCGTCACGGCTTTCGGAGGCAGGCCCTATCCTTCATCACCTCTTTGCCT TCGCTACATGTCCCCTCTGACACCCACCGCCGTAGCCGGAATCGCACGGG CACTCTAAAGGAACGCGAGGCTTCACTCTTTTTGCGCTACAAAACATACC TAGCTACAATACAACCTAGAACGTTCGAGTGTGTGGTGTTCCTCGGCGTC CTTTTGGTAGCGCTTCTTTGTTTTCGCTGGCATATATATATTTTTTTTGT ATCTTCGGGTTTTGTTCCGGTCTGTTCGCCCTCACGTGCACCGGTCGGCT CTCTATGTGGGACGGCGGCGAAATATGTGATTGGTGCCCACGTGCGACGT TGTCAGGGCTTCCACCGCAGGTCCCGACTCCTCCTGTCCATCATCATCAT GGCGCGTCTGGCGTTTGGTCTCGACCCACACATTTCCCCTCGCCACACGT GTACCTTTTTTTCTTCTTCGTTTTTTCTCGTGTCAGGATTCGGTGGACAA GTTCGGCCGGGAGTTGCCTGCCATCTGGGAGGAGTACGCGCAGTTCGAGA TTCACGAGGGGGATGTGAAGAGAGCGAACGCTGTGCGTTGGAGATCCCAA CAGCAGCAGCAGACGGATGGCCGTCTGGGCGGGGGTGTCACGTCTAGCAC CGGCAGAAAGAAGCAGCGATGGGGTTAAGGTAGACATGGAAGGACACCAT CCGCGAAGGGAGCCGTAAATAGCTGAAGAATAGGTGAGCAATCGGCCGAT AGCTTGTGCAGGGGGCGGGGGCAGCCGTGTGCTCGAAGTCGGAAGTAGTG CCGGGAGCATGTGGAATTGATGCGTAGACAGGTTTGGGAGACTTGACGGC GAGTTGGGGGGACTCTGCTGCGCTTGGCAGGTGTTGTCTGTTGTCTCAGG TGCCAGCGTTGGCTGAGGCAAAACTCAATAAGTAGCAGCGCTCTTTTCTC TCAGGAGTTATGTTTTGCCTCCTCTTGCCCATGCACTGCTGTTGCCGTTT TTCGACTGCTAGCGTTGCGGCGGAGGAGAACATGCGCGTTCAGTTGTTAT TAAAGTCGACACGTGGGACGGAGCTTGAGATCCCACACCCTATTGTAGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:826091..831839+

>mRNA_Ecto-sp6_S_contig10.498.1 ID=mRNA_Ecto-sp6_S_contig10.498.1|Name=mRNA_Ecto-sp6_S_contig10.498.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=2433bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:826091..831839+ (Ectocarpus species6 EcLAC_371)
ATGGCGGACAGCGTGCAGTATGCCCTCGATCGCATGGTCGTAGATCTGGA
GGACCTGAGATGTCGAGGGATATTCTCGGAGGCCGAGGTCCGCGCCATCG
TCTCCAGGAGAAAGGGCTTCGAGTACATGCTTCGGCGGCACGAGGCCCGT
CGCCTGGACTTCATGCGCTACGTCCAGTACGAGCTCAACCTCGAGTCCCT
GCGCGCCCTGCGCACGAGACGGATCGAGGGCGGCGGCAGCGGCGGCCAGC
AGCGCAACAAGAAGAAGAAGACCAAGAAGGGGAAGGCCGCCACGGCCGAC
TTCTGCTGCGTGCGCCTGGTGCGGTGGATCTTCGACCGCGCCGTGATGAA
GTTTCCCGGGGACGTGGACATCTGGCTCCACTACATCGACTTCGCCGCCC
GTCAGGGGCAGAGCAAGGCGCTGGGCAGGCTCTTCGCCCGTGCCCTCCAG
CTCCACCCCCGCAACCCCGGGCTCTGGATCAAGGCGGCGAGCTGGGAGTT
CTTCGACGGCGGCAACGCCTCGTCCGCTCGCTCCCTCATGCAGAGGGGGC
TGCGCATCAACCCGGGCGCCCGGAACCTCTGGCTTCAGTACTTCCGCCTC
GAGTTCTCCTACGTGGAGAAGCTCATGGGCAGGAGGGAGATCCTGGGCCT
GGAAGCGGAACGGGGCGGGGCCGGCGACAACGGGCAGGGGAGCGATGATG
ATGATGATGATGGCGGGAGGCGAGGCATGGACATACCGGAGCTCGAGGCT
GAAGCGGGACAGAGCGGGGGTCCCAGCTTCAAGGCCGTGAGGAAAGCGGC
GGGAGCGGAAGGAGCGCTGGGGGGTGGCGACGGCGCGCGTCCGGCGCCGG
TGATGAACGACACCGCCCGGCGGTTCTACAAGGGGGCCGTCCCGATGGCC
GTGTTTCGGGCTGCCGTCAAGGCCGTCCCCGCGGACGTTGGGTTCCGAGC
GGGGTTTCTGCGGTGCTGCGCGGAGGACTTTCCGGTGCTGTCGGCCGAGG
CGGCGCAATCAATCCTGACCTCCATCGAGAGAGACTTTCCCGAGAGCTGC
GAGGCGTGGGAGGTGCGGGCGTCGTACCCACAGCTCGCGGCGGAGGCGGC
GGCGGCGGCCGGTCGCGATGGCGGTCGGTTAGGGTTCGCTGTCGTGCAGG
AGAGCGTGGACACGTTCGAAGTCGCCGTTGAGGCGGTCGGGGCGTCGCAG
CCGGACATGTGGGTACGCTACGCGTCGTTCTTGCGGGGAAGGCTCGAGGC
CTGCGAGGGGGCCGAAGGAAGGAAGAGAGGCGGCGGCGCGGTCGACGGGG
GCAAAGGCGGTGAGATGGTTGGGGCTTCGGCACCGGCCGCCGCCGCGGCC
GCCGCTCTCGCGGCTCGGCTCCGGGAGGTGCTGGCGCGTTCGGTGGAGAT
TCACCTCGCCGGCCGCGCCGCACCGAACGATCCGCCGCGGAGTTCCACCA
CCGCCGTTACCGCGGCAATCGCAGCCCGCAAGGAGAGAGGAGGCGCGTCG
CTGCTCGCGACGAGAGGGGTCGCGGCCCCAGCCGAGGAGCTCGAGGCGCC
GAGTCGGCGCCGGGAGGAAGACTCCCGAGAGGCCCTGTCCGCGGGGCTGG
CGGACGTGTGCCTGGCGCTGGGCGAGCCCGAGGAGGCTCTGGCGGCGCTC
CGCGCCGCGACCGGGGTGCTGCCCCGGCGGCCGGGACCCTGGCTCCGCCG
CGCGGCGCTGGAGCGGCGGCTCGCGGCCTTGGGCGGCGACCCCGGGCAAC
CCGGGTGGCCGGCCAGCAGTGGAAAGAAGCCCAGCCTTGGAGGTAGCAGC
AGTAGTGCTGGCGCTGCTGGTGCCGACGTGGCCGCGGCGACCCTGCGGGC
GGGGATAAAGGCCGTCCCGCCGGCGGCCCCGGGGTACCCCGACCTGTGGC
GGGAGTTGCTCGCGTCTCTGGTGGCCTCGGGGGGTGGGCACAGCAAAAAG
GGAAAAAGTGCGGTGGCAGCGGCGTTCCGGGAGGCCGTCGAGGCATGTGG
GGGAGGGTCCGCAGGGAACAACGCGCAGGGGGAGTTTTTGACCGGGTACG
TCCGCTGGAGCGCGGCCGTGGAGGGTCCTGACGCCGCCCGCCGGGCTCTG
CAGTGGGCAAGGCGTTCCTTCTTGCTCACGGGGACCGGGGCGGCGGCGGC
GTACGGCGAGACGATCGAGCTGGAGAGGGCGCTGGGGGAGGAGGCGGGGG
AGGAAGGGGCAAGGGCGAAGCGCGTGCGGGAACTATTTGAGGATTCGGTG
GACAAGTTCGGCCGGGAGTTGCCTGCCATCTGGGAGGAGTACGCGCAGTT
CGAGATTCACGAGGGGGATGTGAAGAGAGCGAACGCTGTGCGTTGGAGAT
CCCAACAGCAGCAGCAGACGGATGGCCGTCTGGGCGGGGGTGTCACGTCT
AGCACCGGCAGAAAGAAGCAGCGATGGGGTTAA
back to top