mRNA_Ecto-sp6_S_contig10.495.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.495.1
Unique NamemRNA_Ecto-sp6_S_contig10.495.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.495.1 vs. uniprot
Match: D8LSS6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSS6_ECTSI)

HSP 1 Score: 674 bits (1740), Expect = 1.130e-242
Identity = 393/407 (96.56%), Postives = 394/407 (96.81%), Query Frame = 1 
Query:    1 MTKRKGKHLAREEPAVRQPLSQLLSYGHTAALTENALVVLVESDLLGPSWAEVVELQRASRFFCEVCRSCTPVRVRVDPQTPRAMWTRTSRPGDGGGRDNRGGGDSSENDGSKVRAKGRKKWSLWRRQKQXXXXXXXXXXXXXXXXXXXXXXAPAPSRLPRLSITSLVWAAPAKNLGDGSDLPLALRELTFDRGFNRRLVGLAWPPNXXXXXXXXXXXXELACQRRESRSGPGQPAGSTPPPLIAAGDSCRGDRGHRRGKRRENDPETVPLLPASLEELTLGKHFNKPLPPRGLXXXXXXXXXXXXXXRQHRSVRHAVWPRTLKVVRFGEGMLEEQRKNWPRLEAMRGLTPPPSTAPPGENREETKGFAWPGGLDRVEFWREGRVVVRLLGGTTLDKDSLEWLVNNE 1221
            MTKRKGKHLAREEPAVRQPLSQLL YGHTAALTENALVVLVES LLGPSWAEVVELQRAS FFCE+CRSCTPVRVRVD QTPRAMW RTSRPGDGGGRDNRGGGDSSENDGSKVRAKGRKKWSLWRRQKQXXXXXXXXXXXXXXXXXXXXXX    SRLPRLSITSLVWAAPAKNLGDGSDLPLALRELTFDRGFNRRLVGLAWPPNXXXXXXXXXXXXELACQRRESRSGPGQPAGSTPPP IAAG SCRGDRGHRRGKRRENDPETVPLLPASLEELTLGKHFNKPLPPRGLXXXXXXXXXXXXXXRQHRSVRHAVWPRTLKVVRFGEGMLEEQRKNWPRLEAMRGLT  PSTAPPGENREETKGFAWPGGLDRVEFWREGRVVVRLLGGTTLDKDSLEWLVNNE
Sbjct:    1 MTKRKGKHLAREEPAVRQPLSQLLFYGHTAALTENALVVLVESGLLGPSWAEVVELQRASLFFCELCRSCTPVRVRVDAQTPRAMWARTSRPGDGGGRDNRGGGDSSENDGSKVRAKGRKKWSLWRRQKQXXXXXXXXXXXXXXXXXXXXXXXXXXSRLPRLSITSLVWAAPAKNLGDGSDLPLALRELTFDRGFNRRLVGLAWPPNXXXXXXXXXXXXELACQRRESRSGPGQPAGSTPPPPIAAGGSCRGDRGHRRGKRRENDPETVPLLPASLEELTLGKHFNKPLPPRGLXXXXXXXXXXXXXXRQHRSVRHAVWPRTLKVVRFGEGMLEEQRKNWPRLEAMRGLTSSPSTAPPGENREETKGFAWPGGLDRVEFWREGRVVVRLLGGTTLDKDSLEWLVNNE 407
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSS6_ECTSI1.130e-24296.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:797428..799708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1224
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionFNIP
Ec32 orthologEc-15_002780.1
Cds size1224
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348702.8508356-CDS-Ecto-sp6_S_contig10:797427..7975181682348702.8508356-CDS-Ecto-sp6_S_contig10:797427..797518Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 797428..797518 +
1682348702.868341-CDS-Ecto-sp6_S_contig10:798095..7989761682348702.868341-CDS-Ecto-sp6_S_contig10:798095..798976Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 798096..798976 +
1682348702.877105-CDS-Ecto-sp6_S_contig10:799456..7997081682348702.877105-CDS-Ecto-sp6_S_contig10:799456..799708Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 799457..799708 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.495.1prot_Ecto-sp6_S_contig10.495.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 797428..799708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.495.1

>prot_Ecto-sp6_S_contig10.495.1 ID=prot_Ecto-sp6_S_contig10.495.1|Name=mRNA_Ecto-sp6_S_contig10.495.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=408bp
MTKRKGKHLAREEPAVRQPLSQLLSYGHTAALTENALVVLVESDLLGPSW
AEVVELQRASRFFCEVCRSCTPVRVRVDPQTPRAMWTRTSRPGDGGGRDN
RGGGDSSENDGSKVRAKGRKKWSLWRRQKQQKAGGTERNAGGFSNGGGGG
GGAPAPSRLPRLSITSLVWAAPAKNLGDGSDLPLALRELTFDRGFNRRLV
GLAWPPNLRKLTFGSSFNRELACQRRESRSGPGQPAGSTPPPLIAAGDSC
RGDRGHRRGKRRENDPETVPLLPASLEELTLGKHFNKPLPPRGLLPPGLV
SLTLGRNFRQHRSVRHAVWPRTLKVVRFGEGMLEEQRKNWPRLEAMRGLT
PPPSTAPPGENREETKGFAWPGGLDRVEFWREGRVVVRLLGGTTLDKDSL
EWLVNNE*
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mRNA from alignment at Ecto-sp6_S_contig10:797428..799708+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.495.1 ID=mRNA_Ecto-sp6_S_contig10.495.1|Name=mRNA_Ecto-sp6_S_contig10.495.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2281bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:797428..799708+ (Ectocarpus species6 EcLAC_371)
ATGACGAAACGCAAGGGCAAGCATCTGGCCAGAGAGGAACCCGCAGTACG
ACAGCCTCTCTCACAACTGCTATCCTACGGTCACACCGCAGGTATGCAAC
CGTTCCCTCGCTCATGATTGCCTCCGCAACGCTGCTGGTCTTGGCTGTGC
ACGCCACTGCAGGCTGCAACCTCGCGATCAGCAACACCAGGGTTTTTGCT
GCGCATGAGATCCCACCCACTTCAATAGGCGTTTCGATTACAGTGCCTGC
AGGGCCTTCGCCGCAAGAAAGCTACGGTTGTAGTCTACACTAGATCCCCC
TGCTCTTCTTGTACCTACCAACAGGTTAGTGTGCCAAAGGAACGCTCTGC
TTGCCTAAATGCGTGCGTGTGTCAGTGGCCGTTAATACCCAGAGGCGCGT
ATTTTGACCTCGTTTCCCCAATTGCGAGCGATTCACCGCACTGGACCTTT
CGCCTCCACTACTGCTGTAAATGTTTTCGTTTCCTTTTTTTTCTTCGTGA
GCATGAAACACGGATCTCACGTAGCTATCGCCTGATTGTGCCGAAGAATG
AGCTCTTGGGGAAGGTCCTTTAATGCCTCCTTCTACAGCAGTGTACACAC
GCGGCACTCCCAATGACCGCATCATGCGGCACCCCCCTGCGCCTGTCATA
ACCAACTCGAAACAACAGCACTGACGGAGAACGCGCTCGTCGTCCTGGTT
GAGTCCGACCTCCTGGGCCCCTCCTGGGCCGAAGTGGTGGAGCTCCAGCG
CGCCTCCCGCTTCTTCTGCGAAGTGTGCCGAAGCTGCACCCCGGTGCGCG
TGCGAGTTGACCCCCAGACCCCAAGGGCCATGTGGACCCGGACGAGTAGG
CCCGGTGATGGCGGTGGCCGGGACAACCGTGGCGGGGGAGACAGCAGCGA
AAACGACGGGAGTAAAGTCAGGGCCAAAGGGAGAAAAAAGTGGAGCTTGT
GGCGGCGGCAGAAGCAGCAGAAAGCGGGCGGGACCGAGAGGAACGCCGGC
GGTTTCAGCAACGGCGGCGGTGGTGGTGGTGGTGCTCCCGCTCCGTCGCG
ACTCCCACGCCTAAGCATAACAAGCCTCGTGTGGGCGGCGCCGGCGAAAA
ACCTGGGCGACGGCAGCGACCTTCCCCTGGCGTTGAGAGAGCTGACGTTC
GACCGGGGGTTCAACCGGCGCCTGGTTGGACTCGCGTGGCCGCCAAACCT
CCGAAAGCTGACCTTCGGCTCAAGCTTCAATCGAGAGCTAGCCTGCCAGA
GGAGGGAGAGTCGATCAGGGCCCGGACAGCCAGCGGGGTCCACACCGCCT
CCACTGATTGCCGCTGGCGACAGCTGCAGAGGTGATCGTGGTCACCGCAG
GGGGAAGAGGAGGGAGAACGATCCGGAGACCGTTCCTCTCCTTCCGGCAA
GCCTCGAGGAGCTGACGCTCGGGAAGCACTTCAACAAGCCGCTACCACCG
CGGGGGCTGCTGCCTCCCGGGCTGGTGTCCCTGACGCTGGGGAGGAACTT
TCGTCAGCACCGCAGCGTGCGCCACGCGGTGTGGCCCCGGACCCTCAAGG
TGTGTGTGTATTGTGTGTGTGTGTGTGTGTTCTTGAGTTAGCATGAACGG
CGCTGACCAATGATGATACATCAGTACTGTAGCGGGATAAGCGGCTGACT
AATGAAAGGATGCCAGTCTGCGTGCGACTGAAAACAGAAAGTGCTTCCAA
AGGTCATGATGTATGTGTGTGTGAGAGTTACTCGTGTTAGAATCAACCGC
GCTAACCCGGTGACCAATAATTTTGCGTCAGTCTCAGTGCGGCTGAAAGC
AGAAAATGTTTCGAAAGGCCATGATGTATGTGTGTTTCGTGGATTAGCAT
CGACCGCTCACAGACTGACCAATGAAAAAAGTCAGTCTCATTGCGGGACA
AGAAACTGCTTTGCGCGCGTGTCTTTATTACGACTTGCATCCTGTTTGTT
GTTTTTGCTTTCTTTCCGCGCGTGCCTCGCTCTCCCACCTCTCCTTATCC
GGGCATCCGCCAACGCTTTCAACGACAAGGTCGTTAGGTTCGGGGAGGGC
ATGCTCGAGGAGCAGCGGAAGAACTGGCCGCGGCTCGAGGCAATGCGGGG
GCTGACGCCACCGCCCTCCACCGCCCCCCCCGGGGAGAACAGGGAGGAGA
CCAAGGGCTTTGCGTGGCCGGGTGGGTTGGATAGGGTGGAGTTCTGGCGG
GAGGGCAGGGTGGTGGTTCGACTCCTCGGCGGGACCACGCTCGACAAGGA
TTCGCTGGAATGGCTCGTGAACAACGAATGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:797428..799708+

>mRNA_Ecto-sp6_S_contig10.495.1 ID=mRNA_Ecto-sp6_S_contig10.495.1|Name=mRNA_Ecto-sp6_S_contig10.495.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1224bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:797428..799708+ (Ectocarpus species6 EcLAC_371)
ATGACGAAACGCAAGGGCAAGCATCTGGCCAGAGAGGAACCCGCAGTACG
ACAGCCTCTCTCACAACTGCTATCCTACGGTCACACCGCAGCACTGACGG
AGAACGCGCTCGTCGTCCTGGTTGAGTCCGACCTCCTGGGCCCCTCCTGG
GCCGAAGTGGTGGAGCTCCAGCGCGCCTCCCGCTTCTTCTGCGAAGTGTG
CCGAAGCTGCACCCCGGTGCGCGTGCGAGTTGACCCCCAGACCCCAAGGG
CCATGTGGACCCGGACGAGTAGGCCCGGTGATGGCGGTGGCCGGGACAAC
CGTGGCGGGGGAGACAGCAGCGAAAACGACGGGAGTAAAGTCAGGGCCAA
AGGGAGAAAAAAGTGGAGCTTGTGGCGGCGGCAGAAGCAGCAGAAAGCGG
GCGGGACCGAGAGGAACGCCGGCGGTTTCAGCAACGGCGGCGGTGGTGGT
GGTGGTGCTCCCGCTCCGTCGCGACTCCCACGCCTAAGCATAACAAGCCT
CGTGTGGGCGGCGCCGGCGAAAAACCTGGGCGACGGCAGCGACCTTCCCC
TGGCGTTGAGAGAGCTGACGTTCGACCGGGGGTTCAACCGGCGCCTGGTT
GGACTCGCGTGGCCGCCAAACCTCCGAAAGCTGACCTTCGGCTCAAGCTT
CAATCGAGAGCTAGCCTGCCAGAGGAGGGAGAGTCGATCAGGGCCCGGAC
AGCCAGCGGGGTCCACACCGCCTCCACTGATTGCCGCTGGCGACAGCTGC
AGAGGTGATCGTGGTCACCGCAGGGGGAAGAGGAGGGAGAACGATCCGGA
GACCGTTCCTCTCCTTCCGGCAAGCCTCGAGGAGCTGACGCTCGGGAAGC
ACTTCAACAAGCCGCTACCACCGCGGGGGCTGCTGCCTCCCGGGCTGGTG
TCCCTGACGCTGGGGAGGAACTTTCGTCAGCACCGCAGCGTGCGCCACGC
GGTGTGGCCCCGGACCCTCAAGGTCGTTAGGTTCGGGGAGGGCATGCTCG
AGGAGCAGCGGAAGAACTGGCCGCGGCTCGAGGCAATGCGGGGGCTGACG
CCACCGCCCTCCACCGCCCCCCCCGGGGAGAACAGGGAGGAGACCAAGGG
CTTTGCGTGGCCGGGTGGGTTGGATAGGGTGGAGTTCTGGCGGGAGGGCA
GGGTGGTGGTTCGACTCCTCGGCGGGACCACGCTCGACAAGGATTCGCTG
GAATGGCTCGTGAACAACGAATGA
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