Homology
BLAST of mRNA_Ecto-sp6_S_contig10.495.1 vs. uniprot
Match: D8LSS6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSS6_ECTSI) HSP 1 Score: 674 bits (1740), Expect = 1.130e-242 Identity = 393/407 (96.56%), Postives = 394/407 (96.81%), Query Frame = 1 Query: 1 MTKRKGKHLAREEPAVRQPLSQLLSYGHTAALTENALVVLVESDLLGPSWAEVVELQRASRFFCEVCRSCTPVRVRVDPQTPRAMWTRTSRPGDGGGRDNRGGGDSSENDGSKVRAKGRKKWSLWRRQKQXXXXXXXXXXXXXXXXXXXXXXAPAPSRLPRLSITSLVWAAPAKNLGDGSDLPLALRELTFDRGFNRRLVGLAWPPNXXXXXXXXXXXXELACQRRESRSGPGQPAGSTPPPLIAAGDSCRGDRGHRRGKRRENDPETVPLLPASLEELTLGKHFNKPLPPRGLXXXXXXXXXXXXXXRQHRSVRHAVWPRTLKVVRFGEGMLEEQRKNWPRLEAMRGLTPPPSTAPPGENREETKGFAWPGGLDRVEFWREGRVVVRLLGGTTLDKDSLEWLVNNE 1221
MTKRKGKHLAREEPAVRQPLSQLL YGHTAALTENALVVLVES LLGPSWAEVVELQRAS FFCE+CRSCTPVRVRVD QTPRAMW RTSRPGDGGGRDNRGGGDSSENDGSKVRAKGRKKWSLWRRQKQXXXXXXXXXXXXXXXXXXXXXX SRLPRLSITSLVWAAPAKNLGDGSDLPLALRELTFDRGFNRRLVGLAWPPNXXXXXXXXXXXXELACQRRESRSGPGQPAGSTPPP IAAG SCRGDRGHRRGKRRENDPETVPLLPASLEELTLGKHFNKPLPPRGLXXXXXXXXXXXXXXRQHRSVRHAVWPRTLKVVRFGEGMLEEQRKNWPRLEAMRGLT PSTAPPGENREETKGFAWPGGLDRVEFWREGRVVVRLLGGTTLDKDSLEWLVNNE
Sbjct: 1 MTKRKGKHLAREEPAVRQPLSQLLFYGHTAALTENALVVLVESGLLGPSWAEVVELQRASLFFCELCRSCTPVRVRVDAQTPRAMWARTSRPGDGGGRDNRGGGDSSENDGSKVRAKGRKKWSLWRRQKQXXXXXXXXXXXXXXXXXXXXXXXXXXSRLPRLSITSLVWAAPAKNLGDGSDLPLALRELTFDRGFNRRLVGLAWPPNXXXXXXXXXXXXELACQRRESRSGPGQPAGSTPPPPIAAGGSCRGDRGHRRGKRRENDPETVPLLPASLEELTLGKHFNKPLPPRGLXXXXXXXXXXXXXXRQHRSVRHAVWPRTLKVVRFGEGMLEEQRKNWPRLEAMRGLTSSPSTAPPGENREETKGFAWPGGLDRVEFWREGRVVVRLLGGTTLDKDSLEWLVNNE 407
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.495.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match Name | E-value | Identity | Description | |
D8LSS6_ECTSI | 1.130e-242 | 96.56 | Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Stop | 1 |
Start | 1 |
Model size | 1224 |
Hectar predicted targeting category | other localisation |
Exons | 3 |
Ec32 ortholog description | FNIP |
Ec32 ortholog | Ec-15_002780.1 |
Cds size | 1224 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1682348702.8508356-CDS-Ecto-sp6_S_contig10:797427..797518 | 1682348702.8508356-CDS-Ecto-sp6_S_contig10:797427..797518 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig10 797428..797518 + |
1682348702.868341-CDS-Ecto-sp6_S_contig10:798095..798976 | 1682348702.868341-CDS-Ecto-sp6_S_contig10:798095..798976 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig10 798096..798976 + |
1682348702.877105-CDS-Ecto-sp6_S_contig10:799456..799708 | 1682348702.877105-CDS-Ecto-sp6_S_contig10:799456..799708 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig10 799457..799708 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig10.495.1 >prot_Ecto-sp6_S_contig10.495.1 ID=prot_Ecto-sp6_S_contig10.495.1|Name=mRNA_Ecto-sp6_S_contig10.495.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=408bp
MTKRKGKHLAREEPAVRQPLSQLLSYGHTAALTENALVVLVESDLLGPSW AEVVELQRASRFFCEVCRSCTPVRVRVDPQTPRAMWTRTSRPGDGGGRDN RGGGDSSENDGSKVRAKGRKKWSLWRRQKQQKAGGTERNAGGFSNGGGGG GGAPAPSRLPRLSITSLVWAAPAKNLGDGSDLPLALRELTFDRGFNRRLV GLAWPPNLRKLTFGSSFNRELACQRRESRSGPGQPAGSTPPPLIAAGDSC RGDRGHRRGKRRENDPETVPLLPASLEELTLGKHFNKPLPPRGLLPPGLV SLTLGRNFRQHRSVRHAVWPRTLKVVRFGEGMLEEQRKNWPRLEAMRGLT PPPSTAPPGENREETKGFAWPGGLDRVEFWREGRVVVRLLGGTTLDKDSL EWLVNNE* back to topmRNA from alignment at Ecto-sp6_S_contig10:797428..799708+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig10.495.1 ID=mRNA_Ecto-sp6_S_contig10.495.1|Name=mRNA_Ecto-sp6_S_contig10.495.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2281bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:797428..799708+ (Ectocarpus species6 EcLAC_371) ATGACGAAACGCAAGGGCAAGCATCTGGCCAGAGAGGAACCCGCAGTACG
ACAGCCTCTCTCACAACTGCTATCCTACGGTCACACCGCAGGTATGCAAC
CGTTCCCTCGCTCATGATTGCCTCCGCAACGCTGCTGGTCTTGGCTGTGC
ACGCCACTGCAGGCTGCAACCTCGCGATCAGCAACACCAGGGTTTTTGCT
GCGCATGAGATCCCACCCACTTCAATAGGCGTTTCGATTACAGTGCCTGC
AGGGCCTTCGCCGCAAGAAAGCTACGGTTGTAGTCTACACTAGATCCCCC
TGCTCTTCTTGTACCTACCAACAGGTTAGTGTGCCAAAGGAACGCTCTGC
TTGCCTAAATGCGTGCGTGTGTCAGTGGCCGTTAATACCCAGAGGCGCGT
ATTTTGACCTCGTTTCCCCAATTGCGAGCGATTCACCGCACTGGACCTTT
CGCCTCCACTACTGCTGTAAATGTTTTCGTTTCCTTTTTTTTCTTCGTGA
GCATGAAACACGGATCTCACGTAGCTATCGCCTGATTGTGCCGAAGAATG
AGCTCTTGGGGAAGGTCCTTTAATGCCTCCTTCTACAGCAGTGTACACAC
GCGGCACTCCCAATGACCGCATCATGCGGCACCCCCCTGCGCCTGTCATA
ACCAACTCGAAACAACAGCACTGACGGAGAACGCGCTCGTCGTCCTGGTT
GAGTCCGACCTCCTGGGCCCCTCCTGGGCCGAAGTGGTGGAGCTCCAGCG
CGCCTCCCGCTTCTTCTGCGAAGTGTGCCGAAGCTGCACCCCGGTGCGCG
TGCGAGTTGACCCCCAGACCCCAAGGGCCATGTGGACCCGGACGAGTAGG
CCCGGTGATGGCGGTGGCCGGGACAACCGTGGCGGGGGAGACAGCAGCGA
AAACGACGGGAGTAAAGTCAGGGCCAAAGGGAGAAAAAAGTGGAGCTTGT
GGCGGCGGCAGAAGCAGCAGAAAGCGGGCGGGACCGAGAGGAACGCCGGC
GGTTTCAGCAACGGCGGCGGTGGTGGTGGTGGTGCTCCCGCTCCGTCGCG
ACTCCCACGCCTAAGCATAACAAGCCTCGTGTGGGCGGCGCCGGCGAAAA
ACCTGGGCGACGGCAGCGACCTTCCCCTGGCGTTGAGAGAGCTGACGTTC
GACCGGGGGTTCAACCGGCGCCTGGTTGGACTCGCGTGGCCGCCAAACCT
CCGAAAGCTGACCTTCGGCTCAAGCTTCAATCGAGAGCTAGCCTGCCAGA
GGAGGGAGAGTCGATCAGGGCCCGGACAGCCAGCGGGGTCCACACCGCCT
CCACTGATTGCCGCTGGCGACAGCTGCAGAGGTGATCGTGGTCACCGCAG
GGGGAAGAGGAGGGAGAACGATCCGGAGACCGTTCCTCTCCTTCCGGCAA
GCCTCGAGGAGCTGACGCTCGGGAAGCACTTCAACAAGCCGCTACCACCG
CGGGGGCTGCTGCCTCCCGGGCTGGTGTCCCTGACGCTGGGGAGGAACTT
TCGTCAGCACCGCAGCGTGCGCCACGCGGTGTGGCCCCGGACCCTCAAGG
TGTGTGTGTATTGTGTGTGTGTGTGTGTGTTCTTGAGTTAGCATGAACGG
CGCTGACCAATGATGATACATCAGTACTGTAGCGGGATAAGCGGCTGACT
AATGAAAGGATGCCAGTCTGCGTGCGACTGAAAACAGAAAGTGCTTCCAA
AGGTCATGATGTATGTGTGTGTGAGAGTTACTCGTGTTAGAATCAACCGC
GCTAACCCGGTGACCAATAATTTTGCGTCAGTCTCAGTGCGGCTGAAAGC
AGAAAATGTTTCGAAAGGCCATGATGTATGTGTGTTTCGTGGATTAGCAT
CGACCGCTCACAGACTGACCAATGAAAAAAGTCAGTCTCATTGCGGGACA
AGAAACTGCTTTGCGCGCGTGTCTTTATTACGACTTGCATCCTGTTTGTT
GTTTTTGCTTTCTTTCCGCGCGTGCCTCGCTCTCCCACCTCTCCTTATCC
GGGCATCCGCCAACGCTTTCAACGACAAGGTCGTTAGGTTCGGGGAGGGC
ATGCTCGAGGAGCAGCGGAAGAACTGGCCGCGGCTCGAGGCAATGCGGGG
GCTGACGCCACCGCCCTCCACCGCCCCCCCCGGGGAGAACAGGGAGGAGA
CCAAGGGCTTTGCGTGGCCGGGTGGGTTGGATAGGGTGGAGTTCTGGCGG
GAGGGCAGGGTGGTGGTTCGACTCCTCGGCGGGACCACGCTCGACAAGGA
TTCGCTGGAATGGCTCGTGAACAACGAATGA back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig10:797428..799708+ >mRNA_Ecto-sp6_S_contig10.495.1 ID=mRNA_Ecto-sp6_S_contig10.495.1|Name=mRNA_Ecto-sp6_S_contig10.495.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1224bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:797428..799708+ (Ectocarpus species6 EcLAC_371) ATGACGAAACGCAAGGGCAAGCATCTGGCCAGAGAGGAACCCGCAGTACG ACAGCCTCTCTCACAACTGCTATCCTACGGTCACACCGCAGCACTGACGG AGAACGCGCTCGTCGTCCTGGTTGAGTCCGACCTCCTGGGCCCCTCCTGG GCCGAAGTGGTGGAGCTCCAGCGCGCCTCCCGCTTCTTCTGCGAAGTGTG CCGAAGCTGCACCCCGGTGCGCGTGCGAGTTGACCCCCAGACCCCAAGGG CCATGTGGACCCGGACGAGTAGGCCCGGTGATGGCGGTGGCCGGGACAAC CGTGGCGGGGGAGACAGCAGCGAAAACGACGGGAGTAAAGTCAGGGCCAA AGGGAGAAAAAAGTGGAGCTTGTGGCGGCGGCAGAAGCAGCAGAAAGCGG GCGGGACCGAGAGGAACGCCGGCGGTTTCAGCAACGGCGGCGGTGGTGGT GGTGGTGCTCCCGCTCCGTCGCGACTCCCACGCCTAAGCATAACAAGCCT CGTGTGGGCGGCGCCGGCGAAAAACCTGGGCGACGGCAGCGACCTTCCCC TGGCGTTGAGAGAGCTGACGTTCGACCGGGGGTTCAACCGGCGCCTGGTT GGACTCGCGTGGCCGCCAAACCTCCGAAAGCTGACCTTCGGCTCAAGCTT CAATCGAGAGCTAGCCTGCCAGAGGAGGGAGAGTCGATCAGGGCCCGGAC AGCCAGCGGGGTCCACACCGCCTCCACTGATTGCCGCTGGCGACAGCTGC AGAGGTGATCGTGGTCACCGCAGGGGGAAGAGGAGGGAGAACGATCCGGA GACCGTTCCTCTCCTTCCGGCAAGCCTCGAGGAGCTGACGCTCGGGAAGC ACTTCAACAAGCCGCTACCACCGCGGGGGCTGCTGCCTCCCGGGCTGGTG TCCCTGACGCTGGGGAGGAACTTTCGTCAGCACCGCAGCGTGCGCCACGC GGTGTGGCCCCGGACCCTCAAGGTCGTTAGGTTCGGGGAGGGCATGCTCG AGGAGCAGCGGAAGAACTGGCCGCGGCTCGAGGCAATGCGGGGGCTGACG CCACCGCCCTCCACCGCCCCCCCCGGGGAGAACAGGGAGGAGACCAAGGG CTTTGCGTGGCCGGGTGGGTTGGATAGGGTGGAGTTCTGGCGGGAGGGCA GGGTGGTGGTTCGACTCCTCGGCGGGACCACGCTCGACAAGGATTCGCTG GAATGGCTCGTGAACAACGAATGA back to top
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