mRNA_Ecto-sp6_S_contig10.491.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.491.1 vs. uniprot
Match: D8LST0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LST0_ECTSI) HSP 1 Score: 352 bits (903), Expect = 3.050e-122 Identity = 169/172 (98.26%), Postives = 170/172 (98.84%), Query Frame = 2 Query: 122 MATTLNRIINHKAKWHLIDARGQIVGRLAAQIAPIIRGKHKPTFCPNDDCGDVVVVVNANAVEFTGNKWQKKLYRWHSGFPGGLKERPADDQLVRKPEEILRRAVMGMLPKNSLRKRMVTKLLIYPGPSHPHDDRLPMDSAQSLLEKSDRKLIDRRPTDIKKYQDDNYIEWP 637 MATTLNRIINHKAKWHLIDA GQIVGRLAAQIAPIIRGKHKPTFCPNDDCGDVVVVVNANAVEFTGNKWQKK+YRWHSGFPGGLKERPADDQLVRKPEEILRRAVMGMLPKNSLRKRMVTKLLIYPGPSHPHDDRLP DSAQSLLEKSDRKLIDRRPTDIKKYQDDNYIEWP Sbjct: 1 MATTLNRIINHKAKWHLIDASGQIVGRLAAQIAPIIRGKHKPTFCPNDDCGDVVVVVNANAVEFTGNKWQKKVYRWHSGFPGGLKERPADDQLVRKPEEILRRAVMGMLPKNSLRKRMVTKLLIYPGPSHPHDDRLPTDSAQSLLEKSDRKLIDRRPTDIKKYQDDNYIEWP 172
BLAST of mRNA_Ecto-sp6_S_contig10.491.1 vs. uniprot
Match: A0A835ZK23_9STRA (Ribosomal protein L13 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK23_9STRA) HSP 1 Score: 188 bits (478), Expect = 6.750e-58 Identity = 84/124 (67.74%), Postives = 101/124 (81.45%), Query Frame = 2 Query: 149 NHKAKWHLIDARGQIVGRLAAQIAPIIRGKHKPTFCPNDDCGDVVVVVNANAVEFTGNKWQKKLYRWHSGFPGGLKERPADDQLVRKPEEILRRAVMGMLPKNSLRKRMVTKLLIYPGPSHPHD 520 +H+ WHL+DA+ QIVGRLA QIAP++ GKHKPT+ PN CGD+VVV+NA V+FTG KW K+YRWHSG+PGGLKER QL R+PEEILRRAVMGMLPKN LR RM+ +L IY GP+HPH+ Sbjct: 11 SHRPMWHLVDAKDQIVGRLATQIAPLLVGKHKPTYSPNVACGDIVVVINAADVQFTGKKWTDKVYRWHSGYPGGLKERTPKQQLERRPEEILRRAVMGMLPKNKLRSRMILQLKIYEGPAHPHE 134
BLAST of mRNA_Ecto-sp6_S_contig10.491.1 vs. uniprot
Match: A0A7S2R604_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R604_9STRA) HSP 1 Score: 174 bits (440), Expect = 4.170e-52 Identity = 86/140 (61.43%), Postives = 102/140 (72.86%), Query Frame = 2 Query: 140 RIINHKAKWHLIDARGQIVGRLAAQIAPIIRGKHKPTFCPNDDCGDVVVVVNANAVEFTGNKWQKKLYRWHSGFPGGLKERPADDQLVRKPEEILRRAVMGMLPKNSLRKRMVTKLLIYPGPSHPHDDRLPMDSAQSLLE 559 RI ++WHL+DAR Q+VGRLA QI I+RGKHKPT+ PN D GD VVV+NA+ V TG+KW++K YRWHSG+PGGLK R A D RKPEEILR AV GMLPKN LRKR + +L IY GP H + L A+SLLE Sbjct: 13 RIRGTASRWHLVDAREQVVGRLAVQIGGILRGKHKPTYLPNADIGDTVVVINASEVCLTGSKWRQKQYRWHSGYPGGLKARSARDMAARKPEEILRHAVAGMLPKNKLRKRCLARLRIYAGPKHEFEAELGA-GAKSLLE 151
BLAST of mRNA_Ecto-sp6_S_contig10.491.1 vs. uniprot
Match: B8BX67_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BX67_THAPS) HSP 1 Score: 171 bits (432), Expect = 4.790e-51 Identity = 78/124 (62.90%), Postives = 97/124 (78.23%), Query Frame = 2 Query: 164 WHLIDARGQIVGRLAAQIAPIIRGKHKPTFCPNDDCGDVVVVVNANAVEFTGNKWQKKLYRWHSGFPGGLKERPADDQLVRKPEEILRRAVMGMLPKNSLRKR-MVTKLLIYPGPSHPHDDRLP 532 WHL+DA Q VGRLA IAPI++GKHKPT+ PN DCGD VV+VNA+ V +GNKW K+YRWH+G+PGGLKERPA D L RKPE ILR+A++GML +N+LR+ M +L IY G HPH+ +LP Sbjct: 12 WHLVDATSQTVGRLATTIAPILKGKHKPTYRPNGDCGDYVVIVNADKVHLSGNKWDDKIYRWHTGYPGGLKERPAKDMLERKPEFILRKAILGMLYRNNLRESYMEPRLKIYAGSEHPHEAQLP 135
BLAST of mRNA_Ecto-sp6_S_contig10.491.1 vs. uniprot
Match: A0A3F2S0U4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S0U4_9STRA) HSP 1 Score: 170 bits (430), Expect = 1.090e-50 Identity = 75/119 (63.03%), Postives = 92/119 (77.31%), Query Frame = 2 Query: 155 KAKWHLIDARGQIVGRLAAQIAPIIRGKHKPTFCPNDDCGDVVVVVNANAVEFTGNKWQKKLYRWHSGFPGGLKERPADDQLVRKPEEILRRAVMGMLPKNSLRKRMVTKLLIYPGPSH 511 K WH++DA+GQ++GRLA+Q+API+RGKHKPT+ PN DCGD VVV+NA +E TGNKW KLYRWH+G PGGLK+R A D RKPEE+LR+AV GMLPKN +R KL I+ G H Sbjct: 9 KVVWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNVDCGDYVVVINAKDIELTGNKWNNKLYRWHTGHPGGLKQRTAKDLFERKPEEVLRKAVFGMLPKNRMRALQDKKLKIFLGDEH 127
BLAST of mRNA_Ecto-sp6_S_contig10.491.1 vs. uniprot
Match: F0WMW5_9STRA (50S ribosomal protein L13 putative n=2 Tax=Albugo TaxID=65356 RepID=F0WMW5_9STRA) HSP 1 Score: 169 bits (427), Expect = 2.920e-50 Identity = 76/125 (60.80%), Postives = 96/125 (76.80%), Query Frame = 2 Query: 155 KAKWHLIDARGQIVGRLAAQIAPIIRGKHKPTFCPNDDCGDVVVVVNANAVEFTGNKWQKKLYRWHSGFPGGLKERPADDQLVRKPEEILRRAVMGMLPKNSLRKRMVTKLLIYPGPSHPHDDRL 529 K WH++DA+GQIVGRLA+Q+API+ GKHKPT+ PN DCGD +VV+NA + FTG+KW +KLYRWH+G PGGLKER A + RKPEEILR+AV GMLPKN +RK + KL I+ H D++ Sbjct: 11 KVCWHVVDAKGQIVGRLASQLAPILCGKHKPTYAPNVDCGDHLVVINAKDLVFTGDKWNQKLYRWHTGHPGGLKERTAKEMFARKPEEILRKAVYGMLPKNKMRKLQIQKLKIFLDEEHDFQDKV 135
BLAST of mRNA_Ecto-sp6_S_contig10.491.1 vs. uniprot
Match: A0A448Z8K8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z8K8_9STRA) HSP 1 Score: 170 bits (430), Expect = 3.390e-50 Identity = 78/124 (62.90%), Postives = 97/124 (78.23%), Query Frame = 2 Query: 164 WHLIDARGQIVGRLAAQIAPIIRGKHKPTFCPNDDCGDVVVVVNANAVEFTGNKWQKKLYRWHSGFPGGLKERPADDQLVRKPEEILRRAVMGMLPKNSLRKRMVT-KLLIYPGPSHPHDDRLP 532 WHL+DA+ Q VGRLA QI+ I++GKHKPTF PN D GD VVV+NA V+F+G KW KLYRWHSG+PGGLKER A D + RKPEEIL++AV+GML +N+LR + + +L IY GP HPH +LP Sbjct: 12 WHLVDAKNQTVGRLAGQISQILKGKHKPTFRPNKDMGDHVVVINAEKVQFSGKKWNDKLYRWHSGYPGGLKERSARDMMARKPEEILKKAVLGMLKRNNLRHQSIEPRLRIYSGPDHPHTAQLP 135
BLAST of mRNA_Ecto-sp6_S_contig10.491.1 vs. uniprot
Match: A0A7S4HN68_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HN68_9STRA) HSP 1 Score: 169 bits (427), Expect = 8.240e-50 Identity = 76/123 (61.79%), Postives = 96/123 (78.05%), Query Frame = 2 Query: 164 WHLIDARGQIVGRLAAQIAPIIRGKHKPTFCPNDDCGDVVVVVNANAVEFTGNKWQKKLYRWHSGFPGGLKERPADDQLVRKPEEILRRAVMGMLPKNSLRKRMVT-KLLIYPGPSHPHDDRL 529 WHLIDA Q VGRLAA +API+RGKHKPT+ PN DCGD VV+VNA V F+GNKW+ KLYRWH+G+PGGLKERPAD L RKPE +L++A++GM+ K +L+ + +L +Y GP HPH +L Sbjct: 12 WHLIDAADQTVGRLAATVAPILRGKHKPTYRPNADCGDFVVIVNAEKVHFSGNKWKDKLYRWHTGYPGGLKERPADMMLERKPESVLQKAILGMVHKGNLKHGYIEPRLKVYAGPYHPHKSQL 134
BLAST of mRNA_Ecto-sp6_S_contig10.491.1 vs. uniprot
Match: A0A7S3Q0X2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0X2_9STRA) HSP 1 Score: 168 bits (426), Expect = 1.030e-49 Identity = 74/124 (59.68%), Postives = 98/124 (79.03%), Query Frame = 2 Query: 164 WHLIDARGQIVGRLAAQIAPIIRGKHKPTFCPNDDCGDVVVVVNANAVEFTGNKWQKKLYRWHSGFPGGLKERPADDQLVRKPEEILRRAVMGMLPKNSLRKRMVT-KLLIYPGPSHPHDDRLP 532 WH++DA Q VGRLAA IAP+++GKHKPT+ PN DCGD VV+VNA V FTG KW KLYRWH+GFPGGLK+R A + L R+PE+IL++A++GM+ +N+LR + + +L IY GP+HPH +LP Sbjct: 12 WHIVDASTQTVGRLAANIAPLLKGKHKPTYRPNGDCGDYVVIVNAEKVNFTGKKWNDKLYRWHTGFPGGLKQRRAKEMLERQPEKILKKAILGMIHRNNLRHKYIEPRLKIYSGPNHPHTGQLP 135
BLAST of mRNA_Ecto-sp6_S_contig10.491.1 vs. uniprot
Match: A0A7S2UNE7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UNE7_9STRA) HSP 1 Score: 168 bits (426), Expect = 1.500e-49 Identity = 73/124 (58.87%), Postives = 97/124 (78.23%), Query Frame = 2 Query: 164 WHLIDARGQIVGRLAAQIAPIIRGKHKPTFCPNDDCGDVVVVVNANAVEFTGNKWQKKLYRWHSGFPGGLKERPADDQLVRKPEEILRRAVMGMLPKNSLRKRMVT-KLLIYPGPSHPHDDRLP 532 WHL+DA+ Q VGRLA Q+API++GKHKPT+ P+ DCGD+VV++NA V F+G KW KLYRWH+GFPGGLK+R A + L RKPE+IL++A++GML + LR + + +L IY GP HPH +LP Sbjct: 20 WHLVDAQSQTVGRLATQLAPILKGKHKPTYKPHTDCGDIVVIINAEKVHFSGKKWNDKLYRWHTGFPGGLKQRTAKEMLQRKPEDILKKAILGMLSRTKLRHKYIEPRLKIYTGPIHPHSAQLP 143 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig10.491.1 >prot_Ecto-sp6_S_contig10.491.1 ID=prot_Ecto-sp6_S_contig10.491.1|Name=mRNA_Ecto-sp6_S_contig10.491.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=173bp MATTLNRIINHKAKWHLIDARGQIVGRLAAQIAPIIRGKHKPTFCPNDDCback to top mRNA from alignment at Ecto-sp6_S_contig10:727064..729561- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig10.491.1 ID=mRNA_Ecto-sp6_S_contig10.491.1|Name=mRNA_Ecto-sp6_S_contig10.491.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2498bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:727064..729561- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:727064..729561- >mRNA_Ecto-sp6_S_contig10.491.1 ID=mRNA_Ecto-sp6_S_contig10.491.1|Name=mRNA_Ecto-sp6_S_contig10.491.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:727064..729561- (Ectocarpus species6 EcLAC_371)back to top |