mRNA_Ecto-sp6_S_contig10.487.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.487.1
Unique NamemRNA_Ecto-sp6_S_contig10.487.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.487.1 vs. uniprot
Match: D8LST2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LST2_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 3.770e-41
Identity = 87/93 (93.55%), Postives = 89/93 (95.70%), Query Frame = 1 
Query:    1 MRKGYPARLFNHSCNPNVYLYTGCETQVGDDPVYLDALLXXXXXXXXXXXXXXXXXXCTVIAEFHGEGTKPAEAQERIAAYGDTTRELGQEMQ 279
            MRKGYPARLFNHSCNPNVYLYTGC+ QVGDDPVYLDALLXXXXXXXXXXXXXXXXXXCTVIAEFHGEGTKPAEAQERIAA  DTTREL +EMQ
Sbjct:    1 MRKGYPARLFNHSCNPNVYLYTGCKVQVGDDPVYLDALLXXXXXXXXXXXXXXXXXXCTVIAEFHGEGTKPAEAQERIAACRDTTRELEREMQ 93
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LST2_ECTSI3.770e-4193.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:711235..713115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size282
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionProbable SET domain pseudogene
Ec32 orthologEc-15_002700.1
Cds size282
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348702.1778967-CDS-Ecto-sp6_S_contig10:711234..7113001682348702.1778967-CDS-Ecto-sp6_S_contig10:711234..711300Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 711235..711300 +
1682348702.186975-CDS-Ecto-sp6_S_contig10:712128..7122391682348702.186975-CDS-Ecto-sp6_S_contig10:712128..712239Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 712129..712239 +
1682348702.1952078-CDS-Ecto-sp6_S_contig10:713010..7131151682348702.1952078-CDS-Ecto-sp6_S_contig10:713010..713115Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 713011..713115 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.487.1prot_Ecto-sp6_S_contig10.487.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 711235..713115 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.487.1

>prot_Ecto-sp6_S_contig10.487.1 ID=prot_Ecto-sp6_S_contig10.487.1|Name=mRNA_Ecto-sp6_S_contig10.487.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=94bp
MRKGYPARLFNHSCNPNVYLYTGCETQVGDDPVYLDALLKGYPARFLNHS
CSPNVYLCTVIAEFHGEGTKPAEAQERIAAYGDTTRELGQEMQ*
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mRNA from alignment at Ecto-sp6_S_contig10:711235..713115+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.487.1 ID=mRNA_Ecto-sp6_S_contig10.487.1|Name=mRNA_Ecto-sp6_S_contig10.487.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1881bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:711235..713115+ (Ectocarpus species6 EcLAC_371)
ATGAGGAAGGGGTACCCAGCGAGGCTTTTCAACCACTCGTGCAATCCTAA
CGTCTATCTCTACACGGTGAGCACCGTACTATGGCTCCAGCAGTAGATAG
ACTGAAAAACTTACAATTCTTAGTGCTGCTGCCGACGTACATGTGTTTGG
TAGCGAAGAAAAGCAATGGCAAGAAACCCTGCTTGGACATGAAGTGTGTG
AATTCGGATGGCGCGACGTTGATACTCTTCTAATGGACACGCCTGAGGCA
CAAGAGAGTACTTAACCCCCGGACAAAATCAAGAGTCACGCTCCCCCAGA
TCGGCGCCGTGCTCAGATGATCTTCCAACCGCGTTTTCGAGCTGACCCAT
GTGGAATCACGGCGTAGATTATGTGTACGGAGAAGAAGAGAACTGCCTAG
GTCAAACATGGCTTTGCACGGCGCGGAATGGGCGGCGCTATACAGCACAG
CTCTGGGTTACACGACAGAAAGCCCGACCAACGGCTTCACTCCAAAAACA
AGGTCAACCAGACACAATTGTAGCAAGGGGTGCTCTCGCAACAAGATACC
GTTCTCCTGTCTTTGCATCTAAAAAAAACATCCAATCTTCCTGGGTTCGC
TTGCCGCCCGCCTGTACAAATATGCACACACTAAGTAAATAGACCTTCAA
ACACGATCACATGATGCTCTCAGTGCGCTCGACAAAGTAGTATCACCCAC
CCCATCCCACTGACGGCTATAGAGACTAGCCTCCCGGTGGTTGAACTGCA
CAATTCTCACCAACTCTCACAGTGTAGAGCTACACGTTTGGTCGCATGAA
TAGTCAAAGAACCAGGAGGGGTAGCCCTTCACCATCCAGTCCAAGCACAC
GGGTTCATCCCCGGCTTGGACCACGCACTCCTACCATGAGGCAGGGGTGC
GAAACACAAGTGGGAGACGACCCCGTCTACCTGGATGCCCTGCTAAAGGG
TTACCCAGCTCGGTTCCTGAACCATTCGTGTTCACCCAACGTTTACCTCT
GCACGGTGAGCGCAGCGTACCATGCTTCCAACGGTAGGCTAGGTCTCTAT
GTCAGTCAGTTGGATGGGATGGGATGGGTGATATTACTTTGTCGAGCGTA
CTGCGAGCATTGTGTCAACTTGACAGTGTTGTTGGGAACGGAGAGAGGGC
TGACTGGCGAACATCTGCGTACCCGAAACGACGTGATTTCACAGCACGCT
ATCATACCATCCACCCACGCCGTGTTAACGTGAGGTATGGTCGCTGCTGT
CGCATACGTATGATGTGCTGGACAGCAAAGCAAATCAAGGGCAACACACT
GTCTAATTCAACCATGCTTGGGCTTGAAAGTATAAGTGCGTGAAAACGAG
GGTGCCACGTTGCTCTTCCTCTACAAACATGTTTTTCAAAGCAAGGCGAG
GACGGGGTTTGCTGTCGACGTGCCAGCTGAGGTGTACGTGTAGCATGTAC
CAATGTTTAAAAATACCACATAGGTGCGAATTCGTTGGAACACGTGTAGA
AGCACAAGGTAAGGAGACTACAGGTAGTTGGGTGATCGCGAAACTCACAA
ACGAAGCGCCCGCGTCGGCAAAGCACGTCGTTCCACTGCTGTAGCTTGTA
TGCAGAATGCATGCGCCTGAGAGACAACTCTCGCTACAGGCCTTGTGTTG
CCCTCGCTCTCGCACAGTAGCCCATGTCGCAGGACCCTCTATGATGCCAC
ACTCGAGTCGACCACCTCTCCTTGGAACTCCGCTACCACCTCCTGGGCCC
CGATGGCTGCCATCGGGGCCCAAGAGGTCATCGCCGAGTTCCACGGAGAG
GGCACCAAACCTGCTGAGGCCCAGGAGCGGATCGCGGCGTACGGCGACAC
TACGCGAGAGCTAGGGCAAGAGATGCAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:711235..713115+

>mRNA_Ecto-sp6_S_contig10.487.1 ID=mRNA_Ecto-sp6_S_contig10.487.1|Name=mRNA_Ecto-sp6_S_contig10.487.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:711235..713115+ (Ectocarpus species6 EcLAC_371)
ATGAGGAAGGGGTACCCAGCGAGGCTTTTCAACCACTCGTGCAATCCTAA
CGTCTATCTCTACACGGGGTGCGAAACACAAGTGGGAGACGACCCCGTCT
ACCTGGATGCCCTGCTAAAGGGTTACCCAGCTCGGTTCCTGAACCATTCG
TGTTCACCCAACGTTTACCTCTGCACGGTCATCGCCGAGTTCCACGGAGA
GGGCACCAAACCTGCTGAGGCCCAGGAGCGGATCGCGGCGTACGGCGACA
CTACGCGAGAGCTAGGGCAAGAGATGCAGTAG
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