mRNA_Ecto-sp6_S_contig10.477.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.477.1
Unique NamemRNA_Ecto-sp6_S_contig10.477.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:635652..637233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348701.4989936-CDS-Ecto-sp6_S_contig10:635651..6356871682348701.4989936-CDS-Ecto-sp6_S_contig10:635651..635687Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 635652..635687 +
1682348701.507443-CDS-Ecto-sp6_S_contig10:637104..6372331682348701.507443-CDS-Ecto-sp6_S_contig10:637104..637233Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 637105..637233 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.477.1prot_Ecto-sp6_S_contig10.477.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 635652..637233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.477.1

>prot_Ecto-sp6_S_contig10.477.1 ID=prot_Ecto-sp6_S_contig10.477.1|Name=mRNA_Ecto-sp6_S_contig10.477.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=55bp
QALQNHNPLERESAADYKAERRACESIVCFFRSQGHLCPSKHSRVPFRAV
SAHV*
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mRNA from alignment at Ecto-sp6_S_contig10:635652..637233+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.477.1 ID=mRNA_Ecto-sp6_S_contig10.477.1|Name=mRNA_Ecto-sp6_S_contig10.477.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1582bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:635652..637233+ (Ectocarpus species6 EcLAC_371)
CAGGCCTTGCAGAACCACAACCCTCTAGAGCGTGAGGTGAGTACGTCCTA
CGACTGCTGTAGGAACCATTTGAAGTCACACTTGCAAGCTGAGAGGCTTT
GGATGTAGCTTTGGTGTGACGCGCCCTCCGCAAGCATGCACGGACTGGGT
GTGCAGGTCCCACACACTCCCTTAGCTTTTGAGCGAACCACGACACGACG
ACCCTGATTGATGCCTGACCATCACATCGGCTGCCTGCGGGCACCTACCT
CCTGTAGCTTCCCCGTGTGGAGAGCAGACCTGCAGAAGCCCTGACATTGT
GTTGAGTGACGCCGGTTTGTGCGACGCCGGCGCGTAGTAGAGCGGGTTTG
AGCGATATCAACAAGTCAGACCTTGCGCGGTCAGGGGTGCGAATTCAAAT
TTGTTCACCCCGCGACGCATGACGGAGGTGTGTTCCTAGATACTGCACTT
GTACCGAGAGGGGATGGTTCAGGGTTCGGGGTAGATGGGTGTGCACACAG
ATCGAGGCCTCCTTCTGGCAGACACAGGGAGCTTAACCAAGCGTTTCAGC
ACGTGGCCAAATAGACCGTAAGTGTTTGcctggaCAACGAAGTACACAGC
AGTTGCACGCCGCAGGTGCTACATTCTTTTCGGTGTTGGATGCCTGTACA
GCAGTACTGCTGTAGCACGACGCTGTTGAACGTACACATGCGATGGGAGA
ATATGCACAGATCTCGTCCTGCTGCACAcagcaaactgccagcgCAGTTA
GTTTACAGCACATCCGGCGTACTTTTCCAAAATCAGTCGTGTGGGAGAGC
GAGCGCACCGTGTGTGAATGCTTCATCCATCGCCCGGGGTAGATAAGAAA
AGAGCtaTAGTCTACTATGCCTATCTTCGTACACCGACAGGCATCTACAT
GTAGGTCGTTGAGTAGCCTAGTGTTAGAGGTCGCGGGGCAAGCTCCACGG
TCGTGCTATGCCGTAGGTGGCATTAAGATATCACACTCCCCGGTGGGCCG
ATTTTCAAAGCTCGATTACTCCACAGCCAAGGGAGTGGCGGCGCGGAAAA
TGGCGGCGTTGGCACAGCACCGAGCGTTCCGAAGACAGCGTGTCATCTAC
ATGCTATGATATGTAGTGGAGCACGACTGAGCTTCGTGGAAAATCGGTCC
AGGTGGTGTGATGTCATACGTCACCCATGGTACATGTCGCACGGATGTAC
ATGAATCAAGTCGAAGGGTCCCGCCGCAAGTCGGAAGGTGTAGCTAAAAA
ATTGGGCgtactGTAACGCGGGAAGAGTTCCACCATGAAACACCCTGTTT
AATCCCCCCCGGCTTCCCCCTCGTCCTCGCTTCCTCACTGCTGTTTCGGG
CATTTGTGGGCATCTTTCTGCGCCCCGCTGCCGTTGGGTTGGTTGGTTTC
TACTCCCGCGTGGCTTTTCTGGTCGCCTCCCTGACCGTGCGACTCTTTTC
AAGAGTGCTGCAGACTACAAGGCCGAACGCCGCGCCTGCGAATCAATTGT
TTGCTTTTTTCGGTCTCAGGGCCACCTCTGCCCAAGCAAGCACTCACGCG
TCCCCTTCCGTGCGGTGTCAGCGCACGTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:635652..637233+

>mRNA_Ecto-sp6_S_contig10.477.1 ID=mRNA_Ecto-sp6_S_contig10.477.1|Name=mRNA_Ecto-sp6_S_contig10.477.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:635652..637233+ (Ectocarpus species6 EcLAC_371)
CAGGCCTTGCAGAACCACAACCCTCTAGAGCGTGAGAGTGCTGCAGACTA
CAAGGCCGAACGCCGCGCCTGCGAATCAATTGTTTGCTTTTTTCGGTCTC
AGGGCCACCTCTGCCCAAGCAAGCACTCACGCGTCCCCTTCCGTGCGGTG
TCAGCGCACGTGTGA
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