mRNA_Ecto-sp6_S_contig10.474.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.474.1
Unique NamemRNA_Ecto-sp6_S_contig10.474.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.474.1 vs. uniprot
Match: A0A6H5KM84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM84_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 2.110e-48
Identity = 102/125 (81.60%), Postives = 105/125 (84.00%), Query Frame = 1 
Query:    1 MGRNQGSKPKDGAQKAGRKTNAEREKIAAQQRNQADGLARMLSRNPQAQPSSKRPRVSGDQSGEGSSAGARSASSAGDVDVIGDSGASSSTAAPTIGESTPPPAGTQQQQSPPGLDDEGDHSRVD 375
            MGRN GSKPKDGAQKAGRKTNAERE+IAAQQ+NQA   ARMLSR+PQAQPS KRPRVS DQSGEGSSA ARSASSAGDVD  G         APTIGESTPPPAGTQQQ SPP LDDEGDHSRVD
Sbjct:    1 MGRNPGSKPKDGAQKAGRKTNAERERIAAQQKNQAAAFARMLSRHPQAQPSLKRPRVSEDQSGEGSSADARSASSAGDVDASGGXXXXXXXXAPTIGESTPPPAGTQQQ-SPPRLDDEGDHSRVD 124
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BLAST of mRNA_Ecto-sp6_S_contig10.474.1 vs. uniprot
Match: A0A6H5JLU6_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU6_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 3.540e-21
Identity = 51/62 (82.26%), Postives = 55/62 (88.71%), Query Frame = -2 
Query:  102 MVGAAVLDEAPESPITSTSPADDALLAPALLPSPLWSPLTRGRFDDGWACGFRESILANPSA 287
            MVGAAVLDE PE P+TSTSPADDALLA ALLPSPLWS L+RGRFD+GWA G RESILAN +A
Sbjct:    1 MVGAAVLDEPPEPPLTSTSPADDALLASALLPSPLWSSLSRGRFDEGWAGGCRESILANAAA 62
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BLAST of mRNA_Ecto-sp6_S_contig10.474.1 vs. uniprot
Match: A0A6H5KAE8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAE8_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 5.750e-18
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = -3 
Query:  248 MVVPELPLYLPESGHPHRPSQEATAAVVYRREVEWTRRWLVPPCLMKHQNP 400
            MVVP+L L+L ESG PHRPS+EATA VVYRREVEWTR WLVPPCLM HQ P
Sbjct:    1 MVVPDLLLHLLESGPPHRPSEEATA-VVYRREVEWTRPWLVPPCLMNHQKP 50
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KM84_9PHAE2.110e-4881.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLU6_9PHAE3.540e-2182.26PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KAE8_9PHAE5.750e-1880.39Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:608237..608975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size729
Hectar predicted targeting categoryother localisation
Exons2
Cds size558
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348701.1012332-UTR-Ecto-sp6_S_contig10:608236..6084071682348701.1012332-UTR-Ecto-sp6_S_contig10:608236..608407Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 608237..608407 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348701.11911-CDS-Ecto-sp6_S_contig10:608407..6084551682348701.11911-CDS-Ecto-sp6_S_contig10:608407..608455Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 608408..608455 -
1682348701.1304097-CDS-Ecto-sp6_S_contig10:608465..6089751682348701.1304097-CDS-Ecto-sp6_S_contig10:608465..608975Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 608466..608975 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.474.1prot_Ecto-sp6_S_contig10.474.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 608408..608975 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.474.1

>prot_Ecto-sp6_S_contig10.474.1 ID=prot_Ecto-sp6_S_contig10.474.1|Name=mRNA_Ecto-sp6_S_contig10.474.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=186bp
MGRNQGSKPKDGAQKAGRKTNAEREKIAAQQRNQADGLARMLSRNPQAQP
SSKRPRVSGDQSGEGSSAGARSASSAGDVDVIGDSGASSSTAAPTIGEST
PPPAGTQQQQSPPGLDDEGDHSRVDREEARAPPFPTVGEGFATAPTELVT
TTATTAAATSTAAAAAAAAASGGSARPAPSQQRQG*
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mRNA from alignment at Ecto-sp6_S_contig10:608237..608975-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.474.1 ID=mRNA_Ecto-sp6_S_contig10.474.1|Name=mRNA_Ecto-sp6_S_contig10.474.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=739bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:608237..608975- (Ectocarpus species6 EcLAC_371)
ATGGGGCGAAATCAAGGGTCAAAGCCCAAGGATGGCGCACAAAAAGCGGG
TCGGAAAACGAATGCGGAGAGGGAAAAGATAGCTGCGCAGCAGAGGAATC
AGGCGGACGGGTTGGCAAGGATGCTTTCCCGGAACCCGCAAGCCCAGCCA
TCATCAAAGCGGCCACGGGTGAGTGGAGACCAGAGTGGGGAGGGAAGCAG
TGCGGGTGCTAGAAGCGCGTCATCCGCCGGCGATGTCGACGTTATTGGGG
ATTCTGGTGCTTCATCAAGCACGGCGGCACCAACCATCGGCGAGTCCACT
CCACCTCCCGCCGGTACACAACAGCAGCAGTCGCCTCCTGGCTTGGACGA
TGAGGGTGACCACTCTCGGGTAGATAGAGAGGAAGCTCGGGCACCACCAT
TCCCAACCGTAGGGGAAGGATTCGCCACAGCACCAACAGAGCTCGTAACA
ACAACGGCAACAACAGCAGCAGCAACATCAACAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGAGTGGCGGCAGTGCACGTCCCGCACCCTCC
CAGCAAAGGCAAGGGTAAAGCCCGTGCTCATGAAGCCTCCCAAGTACGCG
GGGGGGCAACTCGAGCAATGCTATCCTCTCAAATAGGTGAGGGGTTATTA
CAAGCATCAACAGCACTGCCAATGTCAGCGGCACCAGAGGCCGCAACAGG
GGCAGCAACATCGGCACAACTCGCAGCAGTAGCAGCCGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:608237..608975-

>mRNA_Ecto-sp6_S_contig10.474.1 ID=mRNA_Ecto-sp6_S_contig10.474.1|Name=mRNA_Ecto-sp6_S_contig10.474.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=558bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:608237..608975- (Ectocarpus species6 EcLAC_371)
ATGGGGCGAAATCAAGGGTCAAAGCCCAAGGATGGCGCACAAAAAGCGGG
TCGGAAAACGAATGCGGAGAGGGAAAAGATAGCTGCGCAGCAGAGGAATC
AGGCGGACGGGTTGGCAAGGATGCTTTCCCGGAACCCGCAAGCCCAGCCA
TCATCAAAGCGGCCACGGGTGAGTGGAGACCAGAGTGGGGAGGGAAGCAG
TGCGGGTGCTAGAAGCGCGTCATCCGCCGGCGATGTCGACGTTATTGGGG
ATTCTGGTGCTTCATCAAGCACGGCGGCACCAACCATCGGCGAGTCCACT
CCACCTCCCGCCGGTACACAACAGCAGCAGTCGCCTCCTGGCTTGGACGA
TGAGGGTGACCACTCTCGGGTAGATAGAGAGGAAGCTCGGGCACCACCAT
TCCCAACCGTAGGGGAAGGATTCGCCACAGCACCAACAGAGCTCGTAACA
ACAACGGCAACAACAGCAGCAGCAACATCAACAGCAGCAGCAGCAGCAGC
AGCAGCAGCAAGTGGCGGCAGTGCACGTCCCGCACCCTCCCAGCAAAGGC
AAGGGTAA
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