mRNA_Ecto-sp6_S_contig10.467.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.467.1
Unique NamemRNA_Ecto-sp6_S_contig10.467.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.467.1 vs. uniprot
Match: D7G8Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 1.060e-36
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 MNLFRVIPQWLAGKLSEYVHNVDFDSLGAGLWSGDLVLRDLQVRTDVSRKLHLPVVLKQGSVDLVRIQ 204
            MNLFRVIPQWLAGKLSEYVHNVDFDSLGAGLWSGDLVLRDLQVRTDVSRKLHLPVVLKQGSVDLVRIQ
Sbjct:    1 MNLFRVIPQWLAGKLSEYVHNVDFDSLGAGLWSGDLVLRDLQVRTDVSRKLHLPVVLKQGSVDLVRIQ 68
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BLAST of mRNA_Ecto-sp6_S_contig10.467.1 vs. uniprot
Match: UPI0018858B50 (vacuolar protein sorting-associated protein 13A-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018858B50)

HSP 1 Score: 52.0 bits (123), Expect = 7.370e-6
Identity = 24/66 (36.36%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:    7 LFRVIPQWLAGK-LSEYVHNVDFDSLGAGLWSGDLVLRDLQVRTDVSRKLHLPVVLKQGSVDLVRI 201
            +F  +  +L  K LS+Y+ N+D DSL   +WSG++ L+DL+++ +    L LPV + +GSV  + +
Sbjct:    1 MFEGVVSYLLNKYLSKYIDNLDTDSLNISVWSGNVELKDLELKPEALAGLELPVAVTRGSVGRIAL 66
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BLAST of mRNA_Ecto-sp6_S_contig10.467.1 vs. uniprot
Match: A0A6J0KTR5_RAPSA (uncharacterized protein LOC108821980 isoform X1 n=2 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0KTR5_RAPSA)

HSP 1 Score: 51.2 bits (121), Expect = 1.380e-5
Identity = 21/54 (38.89%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:   43 LSEYVHNVDFDSLGAGLWSGDLVLRDLQVRTDVSRKLHLPVVLKQGSVDLVRIQ 204
            L EYVH +  ++L   +W GD+VL+DL+++T+    L LPV +K G V  + ++
Sbjct:   14 LGEYVHGLSTEALRISVWKGDVVLKDLKLKTEALNSLKLPVAVKSGFVGTITLK 67
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BLAST of mRNA_Ecto-sp6_S_contig10.467.1 vs. uniprot
Match: A0A2K3L4I2_TRIPR (Pleckstrin homology domain-containing protein (Fragment) n=4 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3L4I2_TRIPR)

HSP 1 Score: 48.9 bits (115), Expect = 1.710e-5
Identity = 20/54 (37.04%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:   43 LSEYVHNVDFDSLGAGLWSGDLVLRDLQVRTDVSRKLHLPVVLKQGSVDLVRIQ 204
            L EYVH +  ++L   +W GD+VL+DL+++++    L LPV +K G V  + ++
Sbjct:   14 LGEYVHGLSSEALRISVWKGDVVLKDLKLKSEALNALKLPVTVKAGFVGTITLK 67
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BLAST of mRNA_Ecto-sp6_S_contig10.467.1 vs. uniprot
Match: A0A7S0QMY0_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QMY0_9CRYP)

HSP 1 Score: 50.8 bits (120), Expect = 1.880e-5
Identity = 20/63 (31.75%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   16 VIPQWLAGKLSEYVHNVDFDSLGAGLWSGDLVLRDLQVRTDVSRKLHLPVVLKQGSVDLVRIQ 204
            ++  +L+ +L+++V ++D ++L  G+W G++VL DL++R+D    L  P  L+ G +  +RI+
Sbjct:    5 LLSNFLSSRLTQFVKHIDTENLKVGIWKGEVVLEDLELRSDCFEGLDAPFFLRGGYIGNLRIK 67
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BLAST of mRNA_Ecto-sp6_S_contig10.467.1 vs. uniprot
Match: A0A2R6XLE0_MARPO (Uncharacterized protein n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XLE0_MARPO)

HSP 1 Score: 50.8 bits (120), Expect = 1.890e-5
Identity = 24/63 (38.10%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:   16 VIPQWLAGKLSEYVHNVDFDSLGAGLWSGDLVLRDLQVRTDVSRKLHLPVVLKQGSVDLVRIQ 204
            V+ Q LAG L +YV ++  +    GLWSG  +L ++++R +    L LP  +KQG+V  +R Q
Sbjct:    5 VLYQLLAGYLGQYVKDIQREQFRIGLWSGQALLENVELRLEAFDYLQLPFSIKQGTVGKLRFQ 67
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BLAST of mRNA_Ecto-sp6_S_contig10.467.1 vs. uniprot
Match: R1EHU0_BOTPV (Vacuolar protein sorting-associated protein n=4 Tax=Botryosphaeriaceae TaxID=45131 RepID=R1EHU0_BOTPV)

HSP 1 Score: 49.3 bits (116), Expect = 6.590e-5
Identity = 23/55 (41.82%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:   16 VIPQWLAGKLSEYVHNVDFDSLGAGLWSGDLVLRDLQVRTDVSRKLHLPVVLKQG 180
            ++   L   L  YV N D   L  G+WSGD+ LRDL++R +   +LHLP+ + QG
Sbjct:    5 IVANLLNRFLGMYVQNFDPKQLNVGIWSGDVKLRDLELRREALDQLHLPLNVVQG 59
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BLAST of mRNA_Ecto-sp6_S_contig10.467.1 vs. uniprot
Match: K2RF79_MACPH (Vacuolar protein sorting-associated protein n=1 Tax=Macrophomina phaseolina (strain MS6) TaxID=1126212 RepID=K2RF79_MACPH)

HSP 1 Score: 49.3 bits (116), Expect = 6.590e-5
Identity = 23/55 (41.82%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:   16 VIPQWLAGKLSEYVHNVDFDSLGAGLWSGDLVLRDLQVRTDVSRKLHLPVVLKQG 180
            ++   L   L  YV N D   L  G+WSGD+ LRDL++R +   +LHLP+ + QG
Sbjct:    5 IVANLLNRFLGMYVQNFDPKQLNVGIWSGDVKLRDLELRREALDQLHLPLNVVQG 59
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.467.1 vs. uniprot
Match: A0A6A6DFU2_9PEZI (Vacuolar protein sorting-associated protein n=2 Tax=Dothideomycetes TaxID=147541 RepID=A0A6A6DFU2_9PEZI)

HSP 1 Score: 49.3 bits (116), Expect = 6.590e-5
Identity = 22/54 (40.74%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:   43 LSEYVHNVDFDSLGAGLWSGDLVLRDLQVRTDVSRKLHLPVVLKQGSVDLVRIQ 204
            L  YV N D   L  G+WSGD+ LRDL++R +   +LHLP+ + +G +  + +Q
Sbjct:   14 LGMYVQNFDAKQLNVGIWSGDVKLRDLELRREALDQLHLPLNVIEGHLGQLTLQ 67
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.467.1 vs. uniprot
Match: A0A8E2EZT4_9PEZI (Vacuolar protein sorting-associated protein n=1 Tax=Glonium stellatum TaxID=574774 RepID=A0A8E2EZT4_9PEZI)

HSP 1 Score: 49.3 bits (116), Expect = 6.590e-5
Identity = 22/54 (40.74%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:   43 LSEYVHNVDFDSLGAGLWSGDLVLRDLQVRTDVSRKLHLPVVLKQGSVDLVRIQ 204
            L  YV N D   L  G+WSGD+ LRDL++R +   +LHLP+ + +G +  + +Q
Sbjct:   14 LGMYVRNFDAKQLNVGIWSGDVKLRDLELRREALDQLHLPLNVIEGHLGQLTLQ 67
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7G8Y9_ECTSI1.060e-36100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI0018858B507.370e-636.36vacuolar protein sorting-associated protein 13A-li... [more]
A0A6J0KTR5_RAPSA1.380e-538.89uncharacterized protein LOC108821980 isoform X1 n=... [more]
A0A2K3L4I2_TRIPR1.710e-537.04Pleckstrin homology domain-containing protein (Fra... [more]
A0A7S0QMY0_9CRYP1.880e-531.75Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A2R6XLE0_MARPO1.890e-538.10Uncharacterized protein n=3 Tax=Marchantia polymor... [more]
R1EHU0_BOTPV6.590e-541.82Vacuolar protein sorting-associated protein n=4 Ta... [more]
K2RF79_MACPH6.590e-541.82Vacuolar protein sorting-associated protein n=1 Ta... [more]
A0A6A6DFU2_9PEZI6.590e-540.74Vacuolar protein sorting-associated protein n=2 Ta... [more]
A0A8E2EZT4_9PEZI6.590e-540.74Vacuolar protein sorting-associated protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:452939..454146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score141.0
Seed ortholog evalue2.4e-31
Seed eggNOG ortholog2880.D7G8Y9
Model size237
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
Cds size237
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348699.570043-CDS-Ecto-sp6_S_contig10:452938..4530221682348699.570043-CDS-Ecto-sp6_S_contig10:452938..453022Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 452939..453022 +
1682348699.5787013-CDS-Ecto-sp6_S_contig10:453993..4541461682348699.5787013-CDS-Ecto-sp6_S_contig10:453993..454146Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 453994..454146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.467.1prot_Ecto-sp6_S_contig10.467.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 452939..454146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.467.1

>prot_Ecto-sp6_S_contig10.467.1 ID=prot_Ecto-sp6_S_contig10.467.1|Name=mRNA_Ecto-sp6_S_contig10.467.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=79bp
MNLFRVIPQWLAGKLSEYVHNVDFDSLGAGLWSGDLVLRDLQVRTDVSRK
LHLPVVLKQGSVDLVRIQARAALGQPGS*
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mRNA from alignment at Ecto-sp6_S_contig10:452939..454146+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.467.1 ID=mRNA_Ecto-sp6_S_contig10.467.1|Name=mRNA_Ecto-sp6_S_contig10.467.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1208bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:452939..454146+ (Ectocarpus species6 EcLAC_371)
ATGAACCTCTTCAGAGTTATCCCTCAGTGGCTTGCAGGGAAGCTGAGCGA
GTATGTTCACAACGTGGACTTCGATTCGCTGGGGGTGAGTGCTGAGATAC
AGCAGTATATCTGTTAAATAGCGTCGGAGGTCTTTCAACACACACGTTGG
ACCATTTTATACTCGGAACCTTTAGAAGTGCCCGGGCGGGGGACCGGAGG
GTGCAGCAGGGATCACAGGGCGTGGCATGACTGCTGTCTGTTTTTAGAGC
AAACGGCCGTACCGGTGTCCGGACATTAAGGGATAGATAACGTGGGCGTG
CATTTGGTGGACAGCTTTGCCAGTGTAACTTGACGTTTGTTGTTGAATAA
GTGCAATACGATACTTTTGCTGCTGGCAGTTAATTTCTTGTACGCTGTTA
TGAACAGTCCGCGTGGGGGCGTGTGTATGAAGAAGCGAGGCGTTGCATGT
TAGCCTAACAGTGCAAACTACGCGGTTGCATTCGGTTCTCACACATGCGG
AAGGCATACCACTACGCTGTTCCCTACAAATATATGTTGTTGTGTGAGTC
ACGCAGGCTTACAGCCATTAGAAACACTCATCTCAGACAGCAGTCTCTCG
TTGAGAGTACTACGTCCGCAAAACCAAAGACTAAAAACCGCCCAATGCCA
AAACAAAACACTCCCAACTTAATTAACCAGCGCTCACAGCATAAGATCTG
AAGCTCAAAATTTCGCGAAAAGTAAGGCTGGCTCCTACACTGATTCCATA
TAACAACCTGCGTTCAACAACAATGGTGACGAAATAAGAAACCTTGAGCC
TCGACCCAATTTTGACGTTTCTTTCCTCTGGGCCCGTTGTGCATGTGTCG
TCTCATACGTTAATGCCCAAGCCCCCGTAGCAGAGCGTGTCTCGGCGATT
ACATCGCAGCACGTGCAAACACCAACACGCTTCACTGCGGCGATGAGCGC
CTCAGCTTCTGCTGCAAACGCCAAGGTTCTTCCTCTAATGCGATTTTCTT
GCCGTTGCCCGCCTCCGATCCTCTTCCCTACTGGGCGGTTTCCCCACCAA
AACAGGCCGGGTTGTGGAGTGGAGACTTGGTGCTGCGCGACTTGCAAGTG
CGGACAGACGTTTCGCGCAAGCTCCATCTTCCAGTCGTGCTGAAACAAGG
GTCCGTGGATCTCGTCAGAATACAGGCACGTGCGGCTTTAGGCCAGCCAG
GCAGTTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:452939..454146+

>mRNA_Ecto-sp6_S_contig10.467.1 ID=mRNA_Ecto-sp6_S_contig10.467.1|Name=mRNA_Ecto-sp6_S_contig10.467.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:452939..454146+ (Ectocarpus species6 EcLAC_371)
ATGAACCTCTTCAGAGTTATCCCTCAGTGGCTTGCAGGGAAGCTGAGCGA
GTATGTTCACAACGTGGACTTCGATTCGCTGGGGGCCGGGTTGTGGAGTG
GAGACTTGGTGCTGCGCGACTTGCAAGTGCGGACAGACGTTTCGCGCAAG
CTCCATCTTCCAGTCGTGCTGAAACAAGGGTCCGTGGATCTCGTCAGAAT
ACAGGCACGTGCGGCTTTAGGCCAGCCAGGCAGTTAG
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