mRNA_Ecto-sp6_S_contig10.464.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.464.1
Unique NamemRNA_Ecto-sp6_S_contig10.464.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.464.1 vs. uniprot
Match: D7G8Z3_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Z3_ECTSI)

HSP 1 Score: 850 bits (2196), Expect = 1.060e-304
Identity = 534/660 (80.91%), Postives = 543/660 (82.27%), Query Frame = 1 
Query:    1 MPSLVKKRSHGGDAPGDQQSTLKMRRSCDACALAKRRCDGELRCSLCCKKSIRCVYSTRQKSGPKAHKTPGESVAATATTSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LLKTVPPGKSEPITQAALALSSTAAVAPASPSLSKRKQPAAPGRRHASQQVARKEPRPRHQRKDKDGKKIPAVKSPAXXXXXXXAVVSPSNGTATSRFARQPPVALALPAQVASLPRSKSSAAEETAGAKFAPLPRMVPRRGSSVSAPGSESSVDGSSSSLSWDDVQDVFVSSLEDDVLWSCDDFSDDDRAEGWAAAGVASDDRSPGGFDWLPPNAENATPSNDSPKALEAILMAGDHESVLTTDQTATTAAPRPAGRFAGQPPPLAALAPQEPMMSQMLPSRASSPSVVFAQRSPGGGYGXXXXXXXSSGGLPPSAKISDDVEPIVVNVLPTASGSSSSSSGMLQNSLGRISDSKAADCGDGACSPISAWTPEAVVAGASTLLAVLSDADFCSGVRSDILTGGNGWGVERRHQXXXXXXXXXSSTRWSWPPRNLRANYGMVPRSPPAATPTLVADGFWHSETTATTDGVAVSEKNRGHYXXXXXXXXX--RLALAPPDIGSLVKELSTPSDGGGTAARGGKGSKRYRTATL 1971
            MPSLVKKRSH GDAPGDQQSTLKMRRSCDACALAKRRCDGELRCSLCCKKSIRCVYSTRQKSGPK HKTPGESVAAT TTSI                  XXXXXXXXXXXXXXXXXXXXXXXXXXX LLKTVPPGKSEPIT AALALS+TAAVAPASPSLSKR+QPAAPGRR+ASQQVARKEPR RHQRKD+                                                        AAEETAGAKFAPLPRMVPRRGSSVSAPGSESSVDGSSSSLSWDDVQDVFVSSLEDDVLWSCDDFSDDDRAEGWAAAGVASDD SPGGFDWLP NAEN TPS+D PKALEAILMAGD ESVLTTDQTATTAAPRPAG+FAGQPPP  ALAPQEPMMSQMLPSRASSPSVVFAQRSPG G G   XXXX      PS KISDDVEP+VVNVLPTASGSSSSSSGMLQNSLG ISD+KAADCGDGACSPISAWTPEAVVAGASTLLAVLSDADFCSGVRSDILTGGNGWGVERRHQ  XXXXX  SSTRWSWPPRNL ANY MVPRSPPAATPT+VADG WHSETTATTDGVAVSE      XXXXXXXXX  RLALAPPDI SLVKELSTPSDGGGT ARGGKGSKRYRTATL
Sbjct:    1 MPSLVKKRSHVGDAPGDQQSTLKMRRSCDACALAKRRCDGELRCSLCCKKSIRCVYSTRQKSGPKGHKTPGESVAATVTTSISSTTTADKPIKRCKTSKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLKTVPPGKSEPITPAALALSATAAVAPASPSLSKRQQPAAPGRRYASQQVARKEPRLRHQRKDE--------------------------------------------------------AAEETAGAKFAPLPRMVPRRGSSVSAPGSESSVDGSSSSLSWDDVQDVFVSSLEDDVLWSCDDFSDDDRAEGWAAAGVASDDHSPGGFDWLPLNAENVTPSSDLPKALEAILMAGDQESVLTTDQTATTAAPRPAGQFAGQPPPSMALAPQEPMMSQMLPSRASSPSVVFAQRSPGAG-GSYGXXXXXXXXXXPSTKISDDVEPVVVNVLPTASGSSSSSSGMLQNSLGGISDTKAADCGDGACSPISAWTPEAVVAGASTLLAVLSDADFCSGVRSDILTGGNGWGVERRHQQHXXXXXDDSSTRWSWPPRNLGANYSMVPRSPPAATPTVVADGSWHSETTATTDGVAVSEXXXXXXXXXXXXXXXXXRLALAPPDIRSLVKELSTPSDGGGTTARGGKGSKRYRTATL 603
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.464.1 vs. uniprot
Match: A0A6H5JWH9_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWH9_9PHAE)

HSP 1 Score: 850 bits (2196), Expect = 6.400e-304
Identity = 544/665 (81.80%), Postives = 559/665 (84.06%), Query Frame = 1 
Query:    1 MPSLVKKRSHGGDAPGDQQSTLKMRRSCDACALAKRRCDGELRCSLCCKKSIRCVYSTRQKSGPKAHKTPGESVAATATTSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLKTVPPGKSEPITQAALALSSTAAVAPASPSLSKRKQPAAPGRRHASQQVARKEPRPRHQRKDKDGKKIPAVKSPAXXXXXXXAVVSPSNGTATSRFARQPPVALALPAQVASLPRSKSSAAEETAGAKFAPLPRMVPRRGSSVSAPGSESSVDGSSSSLSWDDVQDVFVSSLEDDVLWSCDDFSDDDRAEGWAAAGVASDDRSPGGFDWLPPNAE-NATPSNDSPKALEAILMAGDHESVLTTDQTATTAAPRPAGRFAGQPPPLAALAPQEPMMSQMLPSRASSPSVVFAQRSPG--GGYGXXXXXXXSSGGLPPSAKISDDVEPIVVNVLPTASGSSSSSSGMLQNSLGRISDSKAADCGDGACSPISAWTPEAVVAGASTLLAVLSDADFCSGVRSDILTGGNGWGVERRHQXXXXXXXXXSSTRWSWPPRNLRANYGMVPRSPPAATPTLVADGFWHSETTATTDGVAVSEKNRGHYXXXXXXXXXR-----LALAPPDIGSLVKELSTPSDGGGTAARGGKGSKRYRTATL 1971
            MPSL+KKR HG DAPGDQQSTLKMRRSCDACALAKRRCDGELRC LCCKKSIRCVYSTRQKSGPK HK P ESVAATATT  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LLKTVPPG     T A LA S TA VAPASPSLSK +Q AAPGRRH SQQVARKEPRPRH RKD DGK+IPAVKSPA       AVVSPSNGTATSRFARQ PVA ALPAQ  SL RSKSSAAEET G KFAPLPRMVPRRGSSVSAPGS SSVDGSSSSLSWDDVQDVFVSSLEDDVLWSCDDFSDDDRAEGWA+ GVASD+RSPGGFDW+P   E NATP ND+PKALEAILMA +  SVLTTDQTATTAAPRPAGRFAGQPPP AALAPQEPMM QMLPSRA SP+VVFAQRSPG  GGYG       S+GGLPPSAKISD+VEPIVV+VLP A         MLQNS G ISDS+AADCGDGACSPIS WTPEAVVAGASTLLAVLSDADFCS VRSDIL GGNGWGVERRHQ  XXX    SSTRWSWPPR+LRANYGM PRSPP ATPTLV DG WH+     TDG AVSE NR H     XXXXX      LALAPPDI SLVKELSTPSDGGGTAAR GKGSKRYRTATL
Sbjct:    1 MPSLIKKRLHGEDAPGDQQSTLKMRRSCDACALAKRRCDGELRCLLCCKKSIRCVYSTRQKSGPKGHKAPAESVAATATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LLKTVPPG-----TPADLAPSPTAPVAPASPSLSKGQQLAAPGRRHPSQQVARKEPRPRHHRKDADGKEIPAVKSPAPAAAAANAVVSPSNGTATSRFARQQPVAPALPAQFPSLARSKSSAAEETVGGKFAPLPRMVPRRGSSVSAPGSGSSVDGSSSSLSWDDVQDVFVSSLEDDVLWSCDDFSDDDRAEGWASVGVASDNRSPGGFDWIPSYVEENATPLNDAPKALEAILMATEQASVLTTDQTATTAAPRPAGRFAGQPPPSAALAPQEPMMYQMLPSRAFSPNVVFAQRSPGAGGGYGGGCE---SNGGLPPSAKISDEVEPIVVDVLPAAXXXXXXXXXMLQNSSGGISDSEAADCGDGACSPISGWTPEAVVAGASTLLAVLSDADFCSSVRSDILAGGNGWGVERRHQQHXXXRNDDSSTRWSWPPRDLRANYGMAPRSPPGATPTLVVDGSWHTP----TDGAAVSENNRDHCYHRQXXXXXXXXXXGLALAPPDILSLVKELSTPSDGGGTAARRGKGSKRYRTATL 652
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.464.1 vs. uniprot
Match: A0A6H5K1X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X2_9PHAE)

HSP 1 Score: 421 bits (1083), Expect = 1.580e-139
Identity = 284/473 (60.04%), Postives = 304/473 (64.27%), Query Frame = 1 
Query:  484 KRKQPAAPGRRHASQQVARKEPRPRHQRKDKDGKKIPAVKSPAXXXXXXXAVVSPSNGTATSRFARQPPVALALPAQVASLPRSKSSAAEETAGAKFAPLPRMVPRRGSSVSAPGSESSVDGSSSSLSWDDVQDVFVSSLEDDVLWSCDDFSDDDRAEGWAAAGVASDDRSPGGFDWLPPNAE-NATPSNDSPKALEAILMAGDHESVLTTDQTATTAAPRPAGRFAGQPPPLAALAPQEPMMSQMLPSRASSPSVVFAQRSPGGGYGXXXXXXXSSGGLPPSAKISDDVEPIVVNVLPTASGSSSSS-SGMLQNSLGRISDSKAADCGDGACSPISAWTPEAVVAGASTLLAVLSDADFCSGVRSDILTGGNGWGVERRHQXXXXXXXXXSSTRWSWPPRNLRANYGMVPRSPPAATPTLVADGFWHSETTATTDGVAVSEKNRGHYXXXXXXXXXRLALAPPDIGSLVKEL 1896
            KR+QPAAPGRRH SQ+VARKEPRPRH RKD+DGK+IPA                              PVA ALPA   SL RSKSSAAEETAGAKFA LP MV RRGSSV+                          S        C        AEGWA+AGVASD+RSPGGFDW+P   E NATP ND+PKALEAILMA + ESVLTTDQTATTAAPRPAGRFAGQPPP AALAPQEPM+SQMLPSRASSPSVVFAQRSPG G G       SS GLP  AKIS+D EPIVVNVLP ASGS     SGMLQNSLG  S  KAADCGDGAC+PISAWTPE VVAGAS LL VLSDADF S VRSD LT                                     GMVP SPPAA PTLVADGFWHSE TAT   ++ ++++  H  XXXXXXXXRLALAPPDI  L+KEL
Sbjct:    2 KRQQPAAPGRRHPSQEVARKEPRPRHHRKDEDGKEIPA------------------------------PVAPALPASFPSLARSKSSAAEETAGAKFASLPPMVSRRGSSVTC-------------------------SCRALRTMCC------GAAEGWASAGVASDNRSPGGFDWIPSYVEVNATPLNDAPKALEAILMAAEQESVLTTDQTATTAAPRPAGRFAGQPPPSAALAPQEPMISQMLPSRASSPSVVFAQRSPGAG-GGYRGGGESSDGLPIWAKISEDDEPIVVNVLPAASGSXXXXXSGMLQNSLGGTSYLKAADCGDGACNPISAWTPEPVVAGASALLVVLSDADFFSSVRSDTLT-------------------------------------GMVPSSPPAAMPTLVADGFWHSEITATDGALSKNQRHYSHRQXXXXXXXXRLALAPPDIRGLIKEL 375
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.464.1 vs. uniprot
Match: D7G933_ECTSI (Possible metalloprotease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G933_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 1.710e-29
Identity = 82/116 (70.69%), Postives = 82/116 (70.69%), Query Frame = 1 
Query:  679 RQPPVALALPAQVASLPRSKSSAAEETAGAKFAPLPRMV-PRRGSSVSAPGSESSVDGSSSSLSWDDVQDVFVSSLEDDVLWSCDDFSDDDRAEGWAAAGVASDDRSPGGFDWLPP 1023
            R  PVA ALPAQ  SL RSK SAAEETAGAKFA  PRMV PRRGSSVSAPGSESSVDGSSSSLSWDD                       DRAEGWAAAGVASDDRS GGFDWLPP
Sbjct:  228 RTKPVAPALPAQFPSLARSKRSAAEETAGAKFAAHPRMVVPRRGSSVSAPGSESSVDGSSSSLSWDD-----------------------DRAEGWAAAGVASDDRSHGGFDWLPP 320
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G8Z3_ECTSI1.060e-30480.91Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JWH9_9PHAE6.400e-30481.80Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5K1X2_9PHAE1.580e-13960.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G933_ECTSI1.710e-2970.69Possible metalloprotease n=1 Tax=Ectocarpus silicu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:432023..435007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score130.6
Seed ortholog evalue2.7e-27
Seed eggNOG ortholog2880.D7G933
Model size1974
KEGG koko:K01408
KEGG Pathwayko05010,map05010
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Belongs to the peptidase M16 family
EggNOG OGsCOG1025@1,KOG0959@2759
Ec32 ortholog descriptionZn(2)-C6 fungal-type DNA-binding domain
Ec32 orthologEc-15_002500.1
EC3.4.24.56
Cds size1974
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348699.3571696-CDS-Ecto-sp6_S_contig10:432022..4338221682348699.3571696-CDS-Ecto-sp6_S_contig10:432022..433822Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 432023..433822 -
1682348699.3681085-CDS-Ecto-sp6_S_contig10:434662..4347551682348699.3681085-CDS-Ecto-sp6_S_contig10:434662..434755Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 434663..434755 -
1682348699.376303-CDS-Ecto-sp6_S_contig10:434926..4350071682348699.376303-CDS-Ecto-sp6_S_contig10:434926..435007Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 434927..435007 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.464.1prot_Ecto-sp6_S_contig10.464.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 432023..435007 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.464.1

>prot_Ecto-sp6_S_contig10.464.1 ID=prot_Ecto-sp6_S_contig10.464.1|Name=mRNA_Ecto-sp6_S_contig10.464.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=658bp
MPSLVKKRSHGGDAPGDQQSTLKMRRSCDACALAKRRCDGELRCSLCCKK
SIRCVYSTRQKSGPKAHKTPGESVAATATTSISSTTTADKPIKRRKTSKK
PSKEQASAAAPSTTTTGWQQHQRQQSSLLKTVPPGKSEPITQAALALSST
AAVAPASPSLSKRKQPAAPGRRHASQQVARKEPRPRHQRKDKDGKKIPAV
KSPAPAAAAATAVVSPSNGTATSRFARQPPVALALPAQVASLPRSKSSAA
EETAGAKFAPLPRMVPRRGSSVSAPGSESSVDGSSSSLSWDDVQDVFVSS
LEDDVLWSCDDFSDDDRAEGWAAAGVASDDRSPGGFDWLPPNAENATPSN
DSPKALEAILMAGDHESVLTTDQTATTAAPRPAGRFAGQPPPLAALAPQE
PMMSQMLPSRASSPSVVFAQRSPGGGYGGYGGGGESSGGLPPSAKISDDV
EPIVVNVLPTASGSSSSSSGMLQNSLGRISDSKAADCGDGACSPISAWTP
EAVVAGASTLLAVLSDADFCSGVRSDILTGGNGWGVERRHQHHQHHHNDD
SSTRWSWPPRNLRANYGMVPRSPPAATPTLVADGFWHSETTATTDGVAVS
EKNRGHYYHRQQQQQQRLALAPPDIGSLVKELSTPSDGGGTAARGGKGSK
RYRTATL*
back to top

mRNA from alignment at Ecto-sp6_S_contig10:432023..435007-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.464.1 ID=mRNA_Ecto-sp6_S_contig10.464.1|Name=mRNA_Ecto-sp6_S_contig10.464.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2985bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:432023..435007- (Ectocarpus species6 EcLAC_371)
ATGCCTAGCCTCGTCAAGAAGAGATCGCACGGAGGGGACGCCCCAGGCGA
CCAGCAGTCAACACTCAAGATGCGCCGATCGGTGAGTAGGCCAGAGCATG
AGATGACGAGATAGATGGTCTCGTGTTGCATCAGAAGAACAACAAACGAG
ATTTTTGTCATGTAAGGGCGAGCAAGTTGTGGCACCGACGTTTTTGCCCC
CGAGCTCACGCGATTTCCTTTGCTTGTGCGTGCTGTCGCTGCCGACACCC
AGTGCGACGCGTGCGCTTTGGCGAAGCGGCGGTGTGATGGGGAGCTGCGC
TGCTCGCTCTGCTGCAAAAAGAGTATTCGCTGCGTCTACAGCACGGTGAG
AGAGTCAGTAGTGAGAGACACGGAGACAAGGAAACCAGAAAAGAAACGAC
ATACATTGTAGATGTACGTACAGCAGTAGTTCGTTGTGTGCCACAGCAGC
CGCAGCGGTTTTGCAGATATGGTAGCGGGTGGTTCAACCGGCCAGTAGGG
CGCGTAGGCGTTGAATGCAACGCGTTTGCGGCGATGCTTTGCATCATCCT
CACTCATGCATGCCTTGCTAAACTGGCTATTTTCTCACGAGACATGCGGG
AGAAGAAAAGAGCGAGCACGAGAAGTGGTACTGTATGCGTGCAGAAAAGA
GCTGCCATGCAAATTGCTGTACTTGTAAAAGAGCGGGATGAGAAGAAAGA
TGTGATATCGTGTGTTGTGTTGTGCTTCGGGAACGTTGCGGGTATCAGCA
AGGTATCAGCGCCGCCAAAGCGTGTAATGGTTGTTAGCTTAACGGCTGGG
GACACCCATGTTACTTGGAGCCTAGACAAAAAGCCGTGTATCCAGACATC
CAGTTCAAGGACGAAACACAACCATTTTTACGTTGTGCGTTCATTATCTC
AGGAGAGCGACACAACCAACCACGCATTTAGACCGACAGACAGCGTTTCA
CACAATCACAACACAGCAACGCATACCGTATCAACATACTCCGGAAGACC
ATGATGTATCTTCCAGTTGCAAACACAAAAGCTTCTCCCCCTTTTGGACA
CTCGCCCCCCTTTGTAGCAGATTGGTGCGTCTCTTGTCCAGCTGTCCAGC
TGCGTGATTGTGTAACGCCCTGCCCCCTCTCTCTGTCCGTTGTGTATCTA
CGAACTTCTTTCATTTTTTTGCTCTCACGGTACAGCGGCAGAAGAGCGGC
CCGAAGGCACATAAGACCCCGGGGGAGTCGGTGGCGGCAACTGCGACGAC
CAGCATCAGCTCCACGACGACTGCCGATAAGCCCATCAAGCGGCGCAAAA
CCTCGAAGAAGCCGTCGAAGGAGCAAGCTTCCGCTGCTGCTCCCTCCACG
ACGACCACCGGGTGGCAGCAGCACCAGCGGCAGCAATCTTCGCTGCTCAA
GACCGTCCCTCCCGGCAAGTCCGAGCCCATCACACAGGCTGCTCTCGCAC
TCTCTTCGACGGCCGCGGTGGCACCCGCGTCGCCGTCGCTGTCGAAGAGG
AAGCAGCCGGCCGCACCCGGCCGCCGACACGCAAGCCAGCAGGTGGCGAG
GAAGGAGCCCCGCCCTCGCCACCAACGGAAGGACAAAGATGGGAAGAAGA
TCCCTGCAGTAAAGAGCCCCGCCCCGGCAGCAGCGGCAGCCACTGCCGTT
GTTTCCCCGTCCAACGGCACCGCCACCAGTCGCTTCGCACGCCAGCCGCC
AGTGGCATTGGCTCTCCCTGCTCAAGTCGCCTCCCTTCCGCGATCCAAAT
CATCAGCAGCGGAGGAGACCGCTGGGGCGAAGTTCGCCCCGCTCCCCCGG
ATGGTTCCGCGTCGCGGGAGCTCTGTGTCAGCCCCGGGCTCGGAATCCAG
CGTCGACGGCAGCTCGTCTTCGCTGAGCTGGGACGACGTTCAGGACGTGT
TCGTGTCGAGCCTTGAGGACGATGTGCTGTGGAGCTGCGACGACTTCTCA
GACGACGACCGGGCGGAGGGCTGGGCAGCGGCTGGGGTTGCGAGCGACGA
CCGCTCACCCGGCGGTTTTGATTGGCTCCCGCCCAACGCGGAGAACGCGA
CACCCTCGAACGATTCGCCCAAAGCGCTGGAGGCGATACTGATGGCCGGC
GACCACGAGTCGGTGTTGACGACCGACCAAACCGCTACCACCGCAGCTCC
CCGTCCGGCAGGCAGGTTTGCGGGTCAGCCGCCGCCGTTGGCAGCACTGG
CGCCGCAAGAGCCGATGATGTCCCAGATGCTCCCGAGTCGCGCGTCTTCC
CCGAGTGTGGTGTTCGCCCAGCGCAGCCCGGGTGGCGGCTACGGCGGCTA
CGGCGGCGGCGGCGAAAGCAGCGGCGGTTTGCCACCCTCGGCAAAAATCA
GCGACGACGTCGAACCCATCGTGGTCAACGTGCTCCCCACAGCAAGCGGC
AGCAGCAGTAGTAGCAGTGGAATGCTCCAGAACTCTCTCGGAAGAATAAG
CGATTCGAAGGCCGCCGACTGCGGGGACGGGGCGTGCAGCCCTATCTCGG
CATGGACACCGGAGGCGGTTGTGGCCGGCGCTTCGACGCTCCTCGCTGTG
CTCTCCGACGCAGATTTCTGCAGCGGTGTCCGGAGCGATATTCTGACGGG
TGGCAACGGTTGGGGGGTCGAGCGCAGGCACCAGCACCACCAGCACCACC
ATAACGACGACAGCAGCACGCGCTGGAGCTGGCCGCCGAGGAACTTGCGC
GCGAACTACGGCATGGTACCCCGTTCTCCTCCTGCTGCCACGCCCACGCT
CGTCGCCGATGGATTCTGGCACTCTGAAACCACCGCTACTACTGACGGTG
TTGCTGTCTCGGAGAAGAACCGTGGTCACTATTACCACCGCCAACAGCAA
CAGCAGCAGCGGCTCGCCCTCGCCCCGCCTGACATCGGTAGCTTGGTCAA
AGAGCTGTCAACGCCGTCGGATGGAGGCGGGACGGCTGCGCGGGGGGGGA
AGGGGTCCAAGAGGTACCGCACCGCTACGTTGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:432023..435007-

>mRNA_Ecto-sp6_S_contig10.464.1 ID=mRNA_Ecto-sp6_S_contig10.464.1|Name=mRNA_Ecto-sp6_S_contig10.464.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1974bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:432023..435007- (Ectocarpus species6 EcLAC_371)
ATGCCTAGCCTCGTCAAGAAGAGATCGCACGGAGGGGACGCCCCAGGCGA
CCAGCAGTCAACACTCAAGATGCGCCGATCGTGCGACGCGTGCGCTTTGG
CGAAGCGGCGGTGTGATGGGGAGCTGCGCTGCTCGCTCTGCTGCAAAAAG
AGTATTCGCTGCGTCTACAGCACGCGGCAGAAGAGCGGCCCGAAGGCACA
TAAGACCCCGGGGGAGTCGGTGGCGGCAACTGCGACGACCAGCATCAGCT
CCACGACGACTGCCGATAAGCCCATCAAGCGGCGCAAAACCTCGAAGAAG
CCGTCGAAGGAGCAAGCTTCCGCTGCTGCTCCCTCCACGACGACCACCGG
GTGGCAGCAGCACCAGCGGCAGCAATCTTCGCTGCTCAAGACCGTCCCTC
CCGGCAAGTCCGAGCCCATCACACAGGCTGCTCTCGCACTCTCTTCGACG
GCCGCGGTGGCACCCGCGTCGCCGTCGCTGTCGAAGAGGAAGCAGCCGGC
CGCACCCGGCCGCCGACACGCAAGCCAGCAGGTGGCGAGGAAGGAGCCCC
GCCCTCGCCACCAACGGAAGGACAAAGATGGGAAGAAGATCCCTGCAGTA
AAGAGCCCCGCCCCGGCAGCAGCGGCAGCCACTGCCGTTGTTTCCCCGTC
CAACGGCACCGCCACCAGTCGCTTCGCACGCCAGCCGCCAGTGGCATTGG
CTCTCCCTGCTCAAGTCGCCTCCCTTCCGCGATCCAAATCATCAGCAGCG
GAGGAGACCGCTGGGGCGAAGTTCGCCCCGCTCCCCCGGATGGTTCCGCG
TCGCGGGAGCTCTGTGTCAGCCCCGGGCTCGGAATCCAGCGTCGACGGCA
GCTCGTCTTCGCTGAGCTGGGACGACGTTCAGGACGTGTTCGTGTCGAGC
CTTGAGGACGATGTGCTGTGGAGCTGCGACGACTTCTCAGACGACGACCG
GGCGGAGGGCTGGGCAGCGGCTGGGGTTGCGAGCGACGACCGCTCACCCG
GCGGTTTTGATTGGCTCCCGCCCAACGCGGAGAACGCGACACCCTCGAAC
GATTCGCCCAAAGCGCTGGAGGCGATACTGATGGCCGGCGACCACGAGTC
GGTGTTGACGACCGACCAAACCGCTACCACCGCAGCTCCCCGTCCGGCAG
GCAGGTTTGCGGGTCAGCCGCCGCCGTTGGCAGCACTGGCGCCGCAAGAG
CCGATGATGTCCCAGATGCTCCCGAGTCGCGCGTCTTCCCCGAGTGTGGT
GTTCGCCCAGCGCAGCCCGGGTGGCGGCTACGGCGGCTACGGCGGCGGCG
GCGAAAGCAGCGGCGGTTTGCCACCCTCGGCAAAAATCAGCGACGACGTC
GAACCCATCGTGGTCAACGTGCTCCCCACAGCAAGCGGCAGCAGCAGTAG
TAGCAGTGGAATGCTCCAGAACTCTCTCGGAAGAATAAGCGATTCGAAGG
CCGCCGACTGCGGGGACGGGGCGTGCAGCCCTATCTCGGCATGGACACCG
GAGGCGGTTGTGGCCGGCGCTTCGACGCTCCTCGCTGTGCTCTCCGACGC
AGATTTCTGCAGCGGTGTCCGGAGCGATATTCTGACGGGTGGCAACGGTT
GGGGGGTCGAGCGCAGGCACCAGCACCACCAGCACCACCATAACGACGAC
AGCAGCACGCGCTGGAGCTGGCCGCCGAGGAACTTGCGCGCGAACTACGG
CATGGTACCCCGTTCTCCTCCTGCTGCCACGCCCACGCTCGTCGCCGATG
GATTCTGGCACTCTGAAACCACCGCTACTACTGACGGTGTTGCTGTCTCG
GAGAAGAACCGTGGTCACTATTACCACCGCCAACAGCAACAGCAGCAGCG
GCTCGCCCTCGCCCCGCCTGACATCGGTAGCTTGGTCAAAGAGCTGTCAA
CGCCGTCGGATGGAGGCGGGACGGCTGCGCGGGGGGGGAAGGGGTCCAAG
AGGTACCGCACCGCTACGTTGTAG
back to top