mRNA_Ecto-sp6_S_contig10.464.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.464.1 vs. uniprot
Match: D7G8Z3_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Z3_ECTSI) HSP 1 Score: 850 bits (2196), Expect = 1.060e-304 Identity = 534/660 (80.91%), Postives = 543/660 (82.27%), Query Frame = 1 Query: 1 MPSLVKKRSHGGDAPGDQQSTLKMRRSCDACALAKRRCDGELRCSLCCKKSIRCVYSTRQKSGPKAHKTPGESVAATATTSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LLKTVPPGKSEPITQAALALSSTAAVAPASPSLSKRKQPAAPGRRHASQQVARKEPRPRHQRKDKDGKKIPAVKSPAXXXXXXXAVVSPSNGTATSRFARQPPVALALPAQVASLPRSKSSAAEETAGAKFAPLPRMVPRRGSSVSAPGSESSVDGSSSSLSWDDVQDVFVSSLEDDVLWSCDDFSDDDRAEGWAAAGVASDDRSPGGFDWLPPNAENATPSNDSPKALEAILMAGDHESVLTTDQTATTAAPRPAGRFAGQPPPLAALAPQEPMMSQMLPSRASSPSVVFAQRSPGGGYGXXXXXXXSSGGLPPSAKISDDVEPIVVNVLPTASGSSSSSSGMLQNSLGRISDSKAADCGDGACSPISAWTPEAVVAGASTLLAVLSDADFCSGVRSDILTGGNGWGVERRHQXXXXXXXXXSSTRWSWPPRNLRANYGMVPRSPPAATPTLVADGFWHSETTATTDGVAVSEKNRGHYXXXXXXXXX--RLALAPPDIGSLVKELSTPSDGGGTAARGGKGSKRYRTATL 1971 MPSLVKKRSH GDAPGDQQSTLKMRRSCDACALAKRRCDGELRCSLCCKKSIRCVYSTRQKSGPK HKTPGESVAAT TTSI XXXXXXXXXXXXXXXXXXXXXXXXXXX LLKTVPPGKSEPIT AALALS+TAAVAPASPSLSKR+QPAAPGRR+ASQQVARKEPR RHQRKD+ AAEETAGAKFAPLPRMVPRRGSSVSAPGSESSVDGSSSSLSWDDVQDVFVSSLEDDVLWSCDDFSDDDRAEGWAAAGVASDD SPGGFDWLP NAEN TPS+D PKALEAILMAGD ESVLTTDQTATTAAPRPAG+FAGQPPP ALAPQEPMMSQMLPSRASSPSVVFAQRSPG G G XXXX PS KISDDVEP+VVNVLPTASGSSSSSSGMLQNSLG ISD+KAADCGDGACSPISAWTPEAVVAGASTLLAVLSDADFCSGVRSDILTGGNGWGVERRHQ XXXXX SSTRWSWPPRNL ANY MVPRSPPAATPT+VADG WHSETTATTDGVAVSE XXXXXXXXX RLALAPPDI SLVKELSTPSDGGGT ARGGKGSKRYRTATL Sbjct: 1 MPSLVKKRSHVGDAPGDQQSTLKMRRSCDACALAKRRCDGELRCSLCCKKSIRCVYSTRQKSGPKGHKTPGESVAATVTTSISSTTTADKPIKRCKTSKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLKTVPPGKSEPITPAALALSATAAVAPASPSLSKRQQPAAPGRRYASQQVARKEPRLRHQRKDE--------------------------------------------------------AAEETAGAKFAPLPRMVPRRGSSVSAPGSESSVDGSSSSLSWDDVQDVFVSSLEDDVLWSCDDFSDDDRAEGWAAAGVASDDHSPGGFDWLPLNAENVTPSSDLPKALEAILMAGDQESVLTTDQTATTAAPRPAGQFAGQPPPSMALAPQEPMMSQMLPSRASSPSVVFAQRSPGAG-GSYGXXXXXXXXXXPSTKISDDVEPVVVNVLPTASGSSSSSSGMLQNSLGGISDTKAADCGDGACSPISAWTPEAVVAGASTLLAVLSDADFCSGVRSDILTGGNGWGVERRHQQHXXXXXDDSSTRWSWPPRNLGANYSMVPRSPPAATPTVVADGSWHSETTATTDGVAVSEXXXXXXXXXXXXXXXXXRLALAPPDIRSLVKELSTPSDGGGTTARGGKGSKRYRTATL 603
BLAST of mRNA_Ecto-sp6_S_contig10.464.1 vs. uniprot
Match: A0A6H5JWH9_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWH9_9PHAE) HSP 1 Score: 850 bits (2196), Expect = 6.400e-304 Identity = 544/665 (81.80%), Postives = 559/665 (84.06%), Query Frame = 1 Query: 1 MPSLVKKRSHGGDAPGDQQSTLKMRRSCDACALAKRRCDGELRCSLCCKKSIRCVYSTRQKSGPKAHKTPGESVAATATTSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLKTVPPGKSEPITQAALALSSTAAVAPASPSLSKRKQPAAPGRRHASQQVARKEPRPRHQRKDKDGKKIPAVKSPAXXXXXXXAVVSPSNGTATSRFARQPPVALALPAQVASLPRSKSSAAEETAGAKFAPLPRMVPRRGSSVSAPGSESSVDGSSSSLSWDDVQDVFVSSLEDDVLWSCDDFSDDDRAEGWAAAGVASDDRSPGGFDWLPPNAE-NATPSNDSPKALEAILMAGDHESVLTTDQTATTAAPRPAGRFAGQPPPLAALAPQEPMMSQMLPSRASSPSVVFAQRSPG--GGYGXXXXXXXSSGGLPPSAKISDDVEPIVVNVLPTASGSSSSSSGMLQNSLGRISDSKAADCGDGACSPISAWTPEAVVAGASTLLAVLSDADFCSGVRSDILTGGNGWGVERRHQXXXXXXXXXSSTRWSWPPRNLRANYGMVPRSPPAATPTLVADGFWHSETTATTDGVAVSEKNRGHYXXXXXXXXXR-----LALAPPDIGSLVKELSTPSDGGGTAARGGKGSKRYRTATL 1971 MPSL+KKR HG DAPGDQQSTLKMRRSCDACALAKRRCDGELRC LCCKKSIRCVYSTRQKSGPK HK P ESVAATATT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LLKTVPPG T A LA S TA VAPASPSLSK +Q AAPGRRH SQQVARKEPRPRH RKD DGK+IPAVKSPA AVVSPSNGTATSRFARQ PVA ALPAQ SL RSKSSAAEET G KFAPLPRMVPRRGSSVSAPGS SSVDGSSSSLSWDDVQDVFVSSLEDDVLWSCDDFSDDDRAEGWA+ GVASD+RSPGGFDW+P E NATP ND+PKALEAILMA + SVLTTDQTATTAAPRPAGRFAGQPPP AALAPQEPMM QMLPSRA SP+VVFAQRSPG GGYG S+GGLPPSAKISD+VEPIVV+VLP A MLQNS G ISDS+AADCGDGACSPIS WTPEAVVAGASTLLAVLSDADFCS VRSDIL GGNGWGVERRHQ XXX SSTRWSWPPR+LRANYGM PRSPP ATPTLV DG WH+ TDG AVSE NR H XXXXX LALAPPDI SLVKELSTPSDGGGTAAR GKGSKRYRTATL Sbjct: 1 MPSLIKKRLHGEDAPGDQQSTLKMRRSCDACALAKRRCDGELRCLLCCKKSIRCVYSTRQKSGPKGHKAPAESVAATATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LLKTVPPG-----TPADLAPSPTAPVAPASPSLSKGQQLAAPGRRHPSQQVARKEPRPRHHRKDADGKEIPAVKSPAPAAAAANAVVSPSNGTATSRFARQQPVAPALPAQFPSLARSKSSAAEETVGGKFAPLPRMVPRRGSSVSAPGSGSSVDGSSSSLSWDDVQDVFVSSLEDDVLWSCDDFSDDDRAEGWASVGVASDNRSPGGFDWIPSYVEENATPLNDAPKALEAILMATEQASVLTTDQTATTAAPRPAGRFAGQPPPSAALAPQEPMMYQMLPSRAFSPNVVFAQRSPGAGGGYGGGCE---SNGGLPPSAKISDEVEPIVVDVLPAAXXXXXXXXXMLQNSSGGISDSEAADCGDGACSPISGWTPEAVVAGASTLLAVLSDADFCSSVRSDILAGGNGWGVERRHQQHXXXRNDDSSTRWSWPPRDLRANYGMAPRSPPGATPTLVVDGSWHTP----TDGAAVSENNRDHCYHRQXXXXXXXXXXGLALAPPDILSLVKELSTPSDGGGTAARRGKGSKRYRTATL 652
BLAST of mRNA_Ecto-sp6_S_contig10.464.1 vs. uniprot
Match: A0A6H5K1X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X2_9PHAE) HSP 1 Score: 421 bits (1083), Expect = 1.580e-139 Identity = 284/473 (60.04%), Postives = 304/473 (64.27%), Query Frame = 1 Query: 484 KRKQPAAPGRRHASQQVARKEPRPRHQRKDKDGKKIPAVKSPAXXXXXXXAVVSPSNGTATSRFARQPPVALALPAQVASLPRSKSSAAEETAGAKFAPLPRMVPRRGSSVSAPGSESSVDGSSSSLSWDDVQDVFVSSLEDDVLWSCDDFSDDDRAEGWAAAGVASDDRSPGGFDWLPPNAE-NATPSNDSPKALEAILMAGDHESVLTTDQTATTAAPRPAGRFAGQPPPLAALAPQEPMMSQMLPSRASSPSVVFAQRSPGGGYGXXXXXXXSSGGLPPSAKISDDVEPIVVNVLPTASGSSSSS-SGMLQNSLGRISDSKAADCGDGACSPISAWTPEAVVAGASTLLAVLSDADFCSGVRSDILTGGNGWGVERRHQXXXXXXXXXSSTRWSWPPRNLRANYGMVPRSPPAATPTLVADGFWHSETTATTDGVAVSEKNRGHYXXXXXXXXXRLALAPPDIGSLVKEL 1896 KR+QPAAPGRRH SQ+VARKEPRPRH RKD+DGK+IPA PVA ALPA SL RSKSSAAEETAGAKFA LP MV RRGSSV+ S C AEGWA+AGVASD+RSPGGFDW+P E NATP ND+PKALEAILMA + ESVLTTDQTATTAAPRPAGRFAGQPPP AALAPQEPM+SQMLPSRASSPSVVFAQRSPG G G SS GLP AKIS+D EPIVVNVLP ASGS SGMLQNSLG S KAADCGDGAC+PISAWTPE VVAGAS LL VLSDADF S VRSD LT GMVP SPPAA PTLVADGFWHSE TAT ++ ++++ H XXXXXXXXRLALAPPDI L+KEL Sbjct: 2 KRQQPAAPGRRHPSQEVARKEPRPRHHRKDEDGKEIPA------------------------------PVAPALPASFPSLARSKSSAAEETAGAKFASLPPMVSRRGSSVTC-------------------------SCRALRTMCC------GAAEGWASAGVASDNRSPGGFDWIPSYVEVNATPLNDAPKALEAILMAAEQESVLTTDQTATTAAPRPAGRFAGQPPPSAALAPQEPMISQMLPSRASSPSVVFAQRSPGAG-GGYRGGGESSDGLPIWAKISEDDEPIVVNVLPAASGSXXXXXSGMLQNSLGGTSYLKAADCGDGACNPISAWTPEPVVAGASALLVVLSDADFFSSVRSDTLT-------------------------------------GMVPSSPPAAMPTLVADGFWHSEITATDGALSKNQRHYSHRQXXXXXXXXRLALAPPDIRGLIKEL 375
BLAST of mRNA_Ecto-sp6_S_contig10.464.1 vs. uniprot
Match: D7G933_ECTSI (Possible metalloprotease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G933_ECTSI) HSP 1 Score: 129 bits (325), Expect = 1.710e-29 Identity = 82/116 (70.69%), Postives = 82/116 (70.69%), Query Frame = 1 Query: 679 RQPPVALALPAQVASLPRSKSSAAEETAGAKFAPLPRMV-PRRGSSVSAPGSESSVDGSSSSLSWDDVQDVFVSSLEDDVLWSCDDFSDDDRAEGWAAAGVASDDRSPGGFDWLPP 1023 R PVA ALPAQ SL RSK SAAEETAGAKFA PRMV PRRGSSVSAPGSESSVDGSSSSLSWDD DRAEGWAAAGVASDDRS GGFDWLPP Sbjct: 228 RTKPVAPALPAQFPSLARSKRSAAEETAGAKFAAHPRMVVPRRGSSVSAPGSESSVDGSSSSLSWDD-----------------------DRAEGWAAAGVASDDRSHGGFDWLPP 320 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig10.464.1 >prot_Ecto-sp6_S_contig10.464.1 ID=prot_Ecto-sp6_S_contig10.464.1|Name=mRNA_Ecto-sp6_S_contig10.464.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=658bp MPSLVKKRSHGGDAPGDQQSTLKMRRSCDACALAKRRCDGELRCSLCCKKback to top mRNA from alignment at Ecto-sp6_S_contig10:432023..435007- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig10.464.1 ID=mRNA_Ecto-sp6_S_contig10.464.1|Name=mRNA_Ecto-sp6_S_contig10.464.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2985bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:432023..435007- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:432023..435007- >mRNA_Ecto-sp6_S_contig10.464.1 ID=mRNA_Ecto-sp6_S_contig10.464.1|Name=mRNA_Ecto-sp6_S_contig10.464.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1974bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:432023..435007- (Ectocarpus species6 EcLAC_371)back to top |