mRNA_Ecto-sp6_S_contig10.423.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.423.1
Unique NamemRNA_Ecto-sp6_S_contig10.423.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.423.1 vs. uniprot
Match: A0A6H5KS48_9PHAE (Post-SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS48_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.810e-29
Identity = 56/73 (76.71%), Postives = 60/73 (82.19%), Query Frame = 2 
Query:  260 EIQVFIGHQNDLHSELDACFAPNAQHALSSCPARTTTNGIYLLYTWPTEDDKLGTRFFPKGLSSAVGEVIANA 478
            +IQV  GHQNDLHSELDACF P AQ+ LSSCPAR TTNGIY LY WPTEDD L TR+ PKG SS VGEVIA+A
Sbjct:   45 QIQVVTGHQNDLHSELDACFTPKAQYVLSSCPARMTTNGIYPLYAWPTEDDTLATRYSPKGHSSEVGEVIASA 117
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.423.1 vs. uniprot
Match: D7FS13_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS13_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.340e-14
Identity = 52/94 (55.32%), Postives = 59/94 (62.77%), Query Frame = 2 
Query:  266 QVFIGHQNDLHSELDACFAPNAQHALSSCPARTTTNGIYLLYTWPTEDDKLGTRFFPKGLSSAVG--------EVIANA*THTALRMGAGLEPG 523
            QVF GHQNDLHSELDACF PNA++ LS     +  +GIY    W  ED KL      KG SSAVG        EVIA+A T+TAL + AGLEPG
Sbjct:  277 QVFTGHQNDLHSELDACFTPNAEYVLSG----SEDSGIY---AWRAEDGKLAKIL--KGHSSAVGRVLCSPKYEVIASACTNTALWIDAGLEPG 361
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.423.1 vs. uniprot
Match: D7FHZ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ8_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 1.340e-11
Identity = 48/94 (51.06%), Postives = 55/94 (58.51%), Query Frame = 2 
Query:  269 VFIGHQNDLHSELDACFAPNAQHALSSCPARTTTNGIYLLYTWPTEDDKLGTRFFPKGLSSAVG---------EVIANA*THTALRMGAGLEPG 523
            VF GHQNDLHSELDACF P+ ++ L         +GIY    W  E  KL T+   KG SSAVG         EV+A+  THTAL M AGLEPG
Sbjct:   42 VFSGHQNDLHSELDACFTPSVEYVLPGSEG----SGIY---AWCAEGGKL-TKIL-KGHSSAVGRVLLVGPKYEVMASVRTHTALWMDAGLEPG 126
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KS48_9PHAE1.810e-2976.71Post-SET domain-containing protein n=1 Tax=Ectocar... [more]
D7FS13_ECTSI1.340e-1455.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FHZ8_ECTSI1.340e-1151.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:105488..107541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size960
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_002090.3
Cds size348
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.423.1prot_Ecto-sp6_S_contig10.423.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 105843..106516 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348695.0634434-UTR-Ecto-sp6_S_contig10:105487..1058421682348695.0634434-UTR-Ecto-sp6_S_contig10:105487..105842Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 105488..105842 -
1682348695.090429-UTR-Ecto-sp6_S_contig10:106516..1066001682348695.090429-UTR-Ecto-sp6_S_contig10:106516..106600Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 106517..106600 -
1682348695.0990982-UTR-Ecto-sp6_S_contig10:106869..1069461682348695.0990982-UTR-Ecto-sp6_S_contig10:106869..106946Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 106870..106946 -
1682348695.107761-UTR-Ecto-sp6_S_contig10:107445..1075411682348695.107761-UTR-Ecto-sp6_S_contig10:107445..107541Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 107446..107541 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348695.0731113-CDS-Ecto-sp6_S_contig10:105842..1061851682348695.0731113-CDS-Ecto-sp6_S_contig10:105842..106185Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 105843..106185 -
1682348695.0821662-CDS-Ecto-sp6_S_contig10:106511..1065161682348695.0821662-CDS-Ecto-sp6_S_contig10:106511..106516Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 106512..106516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.423.1

>prot_Ecto-sp6_S_contig10.423.1 ID=prot_Ecto-sp6_S_contig10.423.1|Name=mRNA_Ecto-sp6_S_contig10.423.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=116bp
MRSRCSSGTRTTCTPSWTRALPRTRSTPCRPVQPGRQPTASTCCTPGQRK
TINLAQDFFPRGSRLRWARSSRTRERTRRCGWARVWNRGCGFSSGGWCLL
IAKLVVNSQRIFGAF*
back to top

mRNA from alignment at Ecto-sp6_S_contig10:105488..107541-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.423.1 ID=mRNA_Ecto-sp6_S_contig10.423.1|Name=mRNA_Ecto-sp6_S_contig10.423.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2054bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:105488..107541- (Ectocarpus species6 EcLAC_371)
GCACACTCCGCAGGTCTCCCATTGCTTAGTGGATGGCGGCATCGAACTGC
GCGAGAGGCCATGGATGAAGAGCGGTCGCTACTTCGAGGCCATGAGGTGA
GTAGCAGCGACGACCAGTTTGTTTTTCAGTGCGTATGAATGAAAGTTTTG
TGGTGGCTGTGAATGTTATTTTGCAATCGTGAATGCGTTGTTGCCGGCCT
CGCAGGTGGGGATTACAATATGTTCCTCTCTTTGTTGTTGTTGTTGATGC
TGCTGCTGCTGCTCCCTTGTTTGTCGACGGAGCAAATGCCGTTGCGTGTC
ACCCAACAGATGTTGAGTGCGGTCGGTTGTTTGCTCGCCATGTTAGGGTT
AACGCTCGCTGACACTCGTTGTGCAACCGATGTTGTCTGGCGATTTTACA
GGAGGCGATGGACACGACAGCCCGACCTGTGCTATCCGTATATCTGCCCC
GTCTATTTCCTGTTCGTACGATATGCGTTCTGTTTGGTTGGGTTGTTTTT
AACAGATCGTCGTCCAAAGCTACTCAAATGACTTATTCCTCACCGTGTGC
GTTCCGATCTTTTTACTTTGTGACAATTGGCGGTTTGTTTTACAGCTTGG
CGTTGCTGACGGCGGACACGACGACAGTACGAGAAGCGCCCGTTTGACAC
GTTCACCGTGGAGCGAAAGAAGGTGTGCGGTGACACTCAGTTCGGTACCT
TGGAGCGATACGGTAGCCAAACTGGCCATCGTTGCGCGCTTGTTGTTTCA
TTTGGCTTCCATTCTCTCGCTTTCCTGTCACCCGTAGTTTTACCTACCCT
TCACGCCCGCCCCCTTCAATACACCTCTAGCTCTAAATCGTCCGGGGCCG
CGTCAAAGGGTTGCGACCGACAATTATTTGTTGTTGTGGATCTTGGTTGT
GAGTGTGATGAGATTACTTCCTACTGCGTCTTACCGCTCAGGTTCCTTCG
TTCCTAGGAATTTATTCCCGATTCCGTGCCATGCAACCCTCGCTTGGCGG
GCGTTGAGAGCTGGGTGTATCGTTCATGAGGTACGAGACTGCCACGCCGC
AGCACATGCAAGGTACGGCTTGGCCTTGGCCTCACCCTGTTCTTATTTCA
CGCTCCTGCTGTGGTAGTAGAACCTCAGAACCTGCTTGTCTATTCGGCCC
CCCGCAACCGTTCGACGAATACCGCTGGACAACACGGGCAGGAACCTCAT
CACGGCAACATGGATTTTTCATGGACAATCCTGATGGCAATTACTGCACC
GCAACTTTCTTTTATGCTCTTCTTCCCACCCCGCCCTTGCCGCGACTCTT
CCTTACACCTTTCCGCACTGGCTGCGCGCCCCGCTTGCTACGACCTGCAA
CTACAGATCCAGGTGTTCATCGGGCACCAGAACGACTTGCACTCCGAGCT
GGACGCGTGCTTTGCCCCGAACGCGCAGCACGCCCTGTCGTCCTGTCCAG
CCCGGACGACAACCAACGGCATCTACCTGCTGTACACCTGGCCAACGGAA
GACGATAAACTTGGCACAAGATTTTTTCCCAAGGGGCTCTCGTCTGCGGT
GGGCGAGGTCATCGCGAACGCGTGAACGCACACGGCGCTGCGGATGGGCG
CGGGTTTGGAACCGGGGCTGTGGGTTTTCATCCGGAGGGTGGTGTCTGTT
GATCGCTAAGCTTGTTGTCAATTCCCAGAGAATATTTGGCGCATTTTGAT
GTCATGTCTAGTGAGTGTAGTTCGATCAGCTCGGACGCTCTAAATTGGTC
ACGATGGAAAAGTTCCTTGCATTCTTGTTCTTTCTCTGTCTTACGGCAGC
GCTGCCTCTGTGTACGTAGTCTGCGGTAGGGTCTCCTGGATGCGATATTG
AGTTTTGAATTTTGAATTTTGAATTTTCGGCAGAAATCAAAGTCCAGTTC
CAAAGTCAATGCTCTCGTGCGTGTGCTCCTTGCTGTATCACTTTATGGAT
CGCGGTGCCGTCCGCACTTGCACTTGCCTACGTCTTTCTCCCGTCTTTGC
GAGCTATGTCAACCCAGAGGGTTTTGCACGCTGTGGTTTTCGGCGAGTGA
GTGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:105488..107541-

>mRNA_Ecto-sp6_S_contig10.423.1 ID=mRNA_Ecto-sp6_S_contig10.423.1|Name=mRNA_Ecto-sp6_S_contig10.423.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:105488..107541- (Ectocarpus species6 EcLAC_371)
ATGAGATCCAGGTGTTCATCGGGCACCAGAACGACTTGCACTCCGAGCTG
GACGCGTGCTTTGCCCCGAACGCGCAGCACGCCCTGTCGTCCTGTCCAGC
CCGGACGACAACCAACGGCATCTACCTGCTGTACACCTGGCCAACGGAAG
ACGATAAACTTGGCACAAGATTTTTTCCCAAGGGGCTCTCGTCTGCGGTG
GGCGAGGTCATCGCGAACGCGTGAACGCACACGGCGCTGCGGATGGGCGC
GGGTTTGGAACCGGGGCTGTGGGTTTTCATCCGGAGGGTGGTGTCTGTTG
ATCGCTAAGCTTGTTGTCAATTCCCAGAGAATATTTGGCGCATTTTGA
back to top