mRNA_Ecto-sp6_S_contig10.421.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.421.1
Unique NamemRNA_Ecto-sp6_S_contig10.421.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.421.1 vs. uniprot
Match: D7G933_ECTSI (Possible metalloprotease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G933_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 2.060e-58
Identity = 99/109 (90.83%), Postives = 100/109 (91.74%), Query Frame = 1 
Query:  214 MIWPWKNPQGILVSPMEKRHYRWLLLPNGLQVMVISDPTA----AARSVDVGAAPDQVGLPGLAHFLEHMVFLGTSKYPLENAYKSYLAKHGGRSNASAARRDIRLSRG 528
            MIWPWKNPQGILVSP+EKRHYRWLLLPNGLQVMVISDP A    AA SVDVGAAPD VGLPGLAHFLEHM FLGTSKYPLENAYKSYLAKHG RSNASAARRDIRLSRG
Sbjct:    1 MIWPWKNPQGILVSPVEKRHYRWLLLPNGLQVMVISDPNANKAAAAMSVDVGAAPDPVGLPGLAHFLEHMAFLGTSKYPLENAYKSYLAKHGDRSNASAARRDIRLSRG 109
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BLAST of mRNA_Ecto-sp6_S_contig10.421.1 vs. uniprot
Match: D7G8Z5_ECTSI (Peptidase_M16 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Z5_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 7.010e-52
Identity = 86/98 (87.76%), Postives = 89/98 (90.82%), Query Frame = 1 
Query:  220 WPWKNPQGILVSPMEKRHYRWLLLPNGLQVMVISDPTA----AARSVDVGAAPDQVGLPGLAHFLEHMVFLGTSKYPLENAYKSYLAKHGGRSNASAA 501
            WPWKNPQGILVSPM+KRHYRWLLLPNGLQVMVISDP A    AA SVDVGAA D VGLPGLAHFLEHM+FLGTSKYP+ENAYKSYLAKHGGRSNAS A
Sbjct:   13 WPWKNPQGILVSPMDKRHYRWLLLPNGLQVMVISDPNANKAAAAMSVDVGAASDPVGLPGLAHFLEHMLFLGTSKYPVENAYKSYLAKHGGRSNASTA 110
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BLAST of mRNA_Ecto-sp6_S_contig10.421.1 vs. uniprot
Match: A0A6H5KRX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRX7_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 1.370e-44
Identity = 86/100 (86.00%), Postives = 89/100 (89.00%), Query Frame = 1 
Query:  220 WPWKNPQGILVSPMEKRHYRWLLLPNGLQVMV--ISDPTA----AARSVDVGAAPDQVGLPGLAHFLEHMVFLGTSKYPLENAYKSYLAKHGGRSNASAA 501
            WPWKNPQGILVSPM+KRHYRWLLLPNGLQVMV  ISDP A    AA SVDVGAA D VGLPGLAHFLEHM+FLGTSKYP+ENAYKSYLAKHGGRSNAS A
Sbjct:  144 WPWKNPQGILVSPMDKRHYRWLLLPNGLQVMVMVISDPNANKAAAAMSVDVGAASDPVGLPGLAHFLEHMLFLGTSKYPVENAYKSYLAKHGGRSNASTA 243
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BLAST of mRNA_Ecto-sp6_S_contig10.421.1 vs. uniprot
Match: A0A836CLR7_9STRA (Metalloenzyme, LuxS/M16 peptidase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLR7_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.680e-27
Identity = 58/96 (60.42%), Postives = 74/96 (77.08%), Query Frame = 1 
Query:  220 WPWKNPQGILVSPMEKRHYRWLLLPNGLQVMVI----SDPTAAARSVDVGAAPDQVGLPGLAHFLEHMVFLGTSKYPLENAYKSYLAKHGGRSNAS 495
            WPW+  QG+L S ++ R Y+++ L NGL+V+++    +D  AAA +V+VGAA D   +PGLAHF EHM+FLGT KYP ENAYKSYLAKHGGRSNAS
Sbjct:  249 WPWRTEQGLLKSSLDHRDYKYVTLCNGLKVLLVHDHKADKAAAAMAVNVGAASDPDLMPGLAHFCEHMLFLGTGKYPTENAYKSYLAKHGGRSNAS 344
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BLAST of mRNA_Ecto-sp6_S_contig10.421.1 vs. uniprot
Match: A0A7S2XZ77_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ77_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.380e-25
Identity = 49/95 (51.58%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:  220 WPWKNPQGILVSPMEKRHYRWLLLPNGLQVMVISDP----TAAARSVDVGAAPDQVGLPGLAHFLEHMVFLGTSKYPLENAYKSYLAKHGGRSNA 492
            W W N QG+LVSP + R Y+   L NG++ +++SDP     AA+ +V  GA  D   +PGLAHF EHM+FLGT  +P+ NAYK++L +HGGRSNA
Sbjct:   15 WTWTNGQGVLVSPQDDRKYKVFKLDNGIEGVLVSDPKTKKAAASLAVGAGAGSDPSDIPGLAHFCEHMLFLGTETFPVTNAYKAFLNQHGGRSNA 109
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BLAST of mRNA_Ecto-sp6_S_contig10.421.1 vs. uniprot
Match: A0A7S4QNY8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QNY8_9DINO)

HSP 1 Score: 105 bits (261), Expect = 1.500e-23
Identity = 55/96 (57.29%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:  220 WPWKNPQGILVSPMEKRHYRWLLLPNGLQVMVISDPT----AAARSVDVGAAPDQVGLPGLAHFLEHMVFLGTSKYPLENAYKSYLAKHGGRSNAS 495
            W      G+ VSP + R +R + LPNGL  +V SDPT    AAA +V VGA  D   LPGLAHF EHM FLG+ KYP ENAYK YL+ HGG+SNAS
Sbjct:   25 WLLVGDDGLEVSPQDDRRHRLVTLPNGLCALVTSDPTSEKAAAALAVMVGAMADPPELPGLAHFCEHMCFLGSEKYPEENAYKKYLSAHGGKSNAS 120
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BLAST of mRNA_Ecto-sp6_S_contig10.421.1 vs. uniprot
Match: A0A7S2DWJ3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DWJ3_9EUKA)

HSP 1 Score: 100 bits (249), Expect = 7.600e-23
Identity = 51/86 (59.30%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:  250 VSPMEKRHYRWLLLPNGLQVMVISDPTA----AARSVDVGAAPDQVGLPGLAHFLEHMVFLGTSKYPLENAYKSYLAKHGGRSNAS 495
            +SP + R +R ++L NGL V++ SDP A    AA +V VGAA D V LPGLAHF EHM+FLG+ KYP E+AYK +L+ HGGRSNAS
Sbjct:   30 ISPHDDRSFRQVVLSNGLNVLLASDPAAEHGAAAMTVSVGAAFDPVDLPGLAHFCEHMLFLGSIKYPDESAYKKFLSSHGGRSNAS 115
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BLAST of mRNA_Ecto-sp6_S_contig10.421.1 vs. uniprot
Match: A0A662WUE2_9STRA (Peptidase_M16 domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WUE2_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.540e-22
Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:  241 GILVSPMEKRHYRWLLLPNGLQVMVISDPT----AAARSVDVGAAPDQVGLPGLAHFLEHMVFLGTSKYPLENAYKSYLAKHGGRSNAS 495
            G+ +S +++R Y  L+L N LQV++ISDPT    +AA  V VG   D   LPGLAHFLEHM+FLGT+KYP EN+YK +L+ H GRSNAS
Sbjct:    9 GMDLSALDEREYESLVLGNALQVLLISDPTTEKSSAAMDVHVGHQSDPEELPGLAHFLEHMLFLGTTKYPDENSYKQFLSAHSGRSNAS 97
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BLAST of mRNA_Ecto-sp6_S_contig10.421.1 vs. uniprot
Match: A0A1B6L1C5_9HEMI (Peptidase_M16 domain-containing protein (Fragment) n=2 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6L1C5_9HEMI)

HSP 1 Score: 99.8 bits (247), Expect = 2.750e-22
Identity = 53/107 (49.53%), Postives = 68/107 (63.55%), Query Frame = 1 
Query:  187 RTSCGGAGGMIWPWKNPQGILVSPMEKRHYRWLLLPNGLQVMVISDPT----AAARSVDVGAAPDQVGLPGLAHFLEHMVFLGTSKYPLENAYKSYLAKHGGRSNAS 495
            R  C     M+   +    ++ S  +KR YR LLL N L+V++ISDPT    +AA  V++G   D   LPGLAHF EHM+FLG+ KYPLEN Y  YL++HGG SNAS
Sbjct:   20 RGICRRYSSMVHVKQRYDNVVKSVEDKRSYRGLLLQNDLRVLLISDPTTDKSSAAIDVNIGFMSDPKELPGLAHFCEHMLFLGSEKYPLENEYSKYLSEHGGSSNAS 126
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BLAST of mRNA_Ecto-sp6_S_contig10.421.1 vs. uniprot
Match: A0A6J0BGJ7_NEOLC (insulin-degrading enzyme-like n=1 Tax=Neodiprion lecontei TaxID=441921 RepID=A0A6J0BGJ7_NEOLC)

HSP 1 Score: 98.2 bits (243), Expect = 2.840e-21
Identity = 49/88 (55.68%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:  244 ILVSPMEKRHYRWLLLPNGLQVMVISDPT----AAARSVDVGAAPDQVGLPGLAHFLEHMVFLGTSKYPLENAYKSYLAKHGGRSNAS 495
            I+ SP +KR YR L+LPN ++V++ISD T    AA+ SV+VG+  D + LPGLAHF EHM+FLGT  YP EN Y  Y+  HGG  NAS
Sbjct:   35 IIKSPNDKRLYRGLILPNDMRVLLISDSTTDKSAASLSVEVGSMNDPIQLPGLAHFCEHMLFLGTEAYPAENGYTKYIYDHGGTCNAS 122
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G933_ECTSI2.060e-5890.83Possible metalloprotease n=1 Tax=Ectocarpus silicu... [more]
D7G8Z5_ECTSI7.010e-5287.76Peptidase_M16 domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KRX7_9PHAE1.370e-4486.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CLR7_9STRA2.680e-2760.42Metalloenzyme, LuxS/M16 peptidase-like protein n=1... [more]
A0A7S2XZ77_9STRA3.380e-2551.58Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S4QNY8_9DINO1.500e-2357.29Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S2DWJ3_9EUKA7.600e-2359.30Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A662WUE2_9STRA2.540e-2257.30Peptidase_M16 domain-containing protein (Fragment)... [more]
A0A1B6L1C5_9HEMI2.750e-2249.53Peptidase_M16 domain-containing protein (Fragment)... [more]
A0A6J0BGJ7_NEOLC2.840e-2155.68insulin-degrading enzyme-like n=1 Tax=Neodiprion l... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:83975..86076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size889
Hectar predicted targeting categoryother localisation
Exons3
Cds size708
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348692.422773-UTR-Ecto-sp6_S_contig10:83974..841531682348692.422773-UTR-Ecto-sp6_S_contig10:83974..84153Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 83975..84153 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348692.4303713-CDS-Ecto-sp6_S_contig10:84153..842801682348692.4303713-CDS-Ecto-sp6_S_contig10:84153..84280Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 84154..84280 +
1682348692.4376361-CDS-Ecto-sp6_S_contig10:84656..847711682348692.4376361-CDS-Ecto-sp6_S_contig10:84656..84771Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 84657..84771 +
1682348692.4495454-CDS-Ecto-sp6_S_contig10:85610..860761682348692.4495454-CDS-Ecto-sp6_S_contig10:85610..86076Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 85611..86076 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.421.1prot_Ecto-sp6_S_contig10.421.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 84154..86076 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.421.1

>prot_Ecto-sp6_S_contig10.421.1 ID=prot_Ecto-sp6_S_contig10.421.1|Name=mRNA_Ecto-sp6_S_contig10.421.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=236bp
MSQNLLRRRWRYDMALEESSRNSRVAHGETPLPMAALAQRSAGHGHQRPD
CSGEVGGRRSSTGPGGPSWPSALPRTHGFSRYIQVPPRKRVQVVPGEAWG
KVERVGGPKGHKALAGDQHQLHDDCRKAYQSAQDRKEAVEEASFRYLLLL
LRTPCGITSGRNLRRSGPSSLPASRSPSHRLISHPLRPPGGTRVAVAVEE
AAAGRTRPPTRKPAGGEEGAPPSPPTEGQRWEEDRC
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mRNA from alignment at Ecto-sp6_S_contig10:83975..86076+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.421.1 ID=mRNA_Ecto-sp6_S_contig10.421.1|Name=mRNA_Ecto-sp6_S_contig10.421.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2102bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:83975..86076+ (Ectocarpus species6 EcLAC_371)
ATATACCAGACGGTGGCAGTCGTGTGTTGTGTTAGTACTGCTGCACGCGT
TGGCGCATATAGCACTCACTCCACAGGGGTGCCGTTGTCCGATGGCAATC
TGACTATAGTCCATGTTTCTGTGCGGTGCTTTGTTTATCTCTTGATCAAT
AGCCGCCGTCTGTTTTGCAACGTATCGTCATGTCTCAGAACCTCTTGCGG
CGGCGCTGGAGGTATGATATGGCCCTGGAAGAATCCTCAAGGAATTCTCG
TGTCGCCCATGGAGAAACGCCACTACCGATGGCTGCTCTTGCCCAACGGT
CTGCAGGTCCGGGTACTTGATCTTTTTTTCGGACCGTTTCTACCATACAG
TATACCCGCGGTGTTTGTTGCTGATCGTATGTCAGCCGCTTGTATCTACT
TGTGGTTGTGATTTTATTGCACTAATATCAGACATGGTTATTGTCAATGC
CCAGACTTAGCTAAACCCCCGCTGATGTAGATACTTTTGTGTGTGGCGGC
GCAAGTGCTAACGCCCTGTTCCCCGAGGCCTGGGCCATCACGAACACTTA
GCTCTATCCCGGCAGTCTGATACATTAGTTTCTCGTCGGCAGGAGCTCCA
TCAAACAACAGGGTTTGGCTATTGACGCAATTGGACCCAACTCATAGAAG
CAACCGCCATCTGTGGGCCTATACACGATCAGGTCATGGTCATCAGCGAC
CCGACTGCAGCGGCGAGGTCGGTGGACGTAGGAGCAGCACCGGACCAGGT
GGGCCTTCCTGGCCTAGCGCACTTCCTCGAACACATGGTTTTTCTCGGTG
AGCGAACATACATAGTACACTGGCGGAGCCTGAGGTTCCGAAACTATAGT
AGAGATAGCGTCAGCTGAGCGGCTGCCACTCGAAATACTGGCACACAATC
AACCACGCTGTAACCCGGGCGCCAGCCATGGCCAGGAAGTGACGCCGGGG
AGTGAGTTTTCTCGTGATGGCCGAATTATCGTAATAGTTAGCTACTAGCT
GTTTTAGCGGCAATTAGTGAGCGTGTTCGTTTTTTTAGACGGGTGTCGTT
CCATCGTGTCGGTCGGTGACTGGGTTGCTGCTGCTGCTGCTGCTGCTGTA
GGGCCGGAGAGTGGGGGAGTTTTCGTATCTTTGCGGCCTTTTCTCCCGTG
AAATCTGAATGCGAACCGCGGGCATTCCGCCGTGTGAGCCCACGCTGAAC
CTCAGTGCTCTGCATTCAGTGAGCGACAAGGAGAGACCAGGGATGGACGT
GTGCCGTGAACGCCTCCATGGGTTGGATGATGAGTTGGCGCGGGTGGGAT
GAAGTATGGCGTGCACGAAAGAAACGCCCCGCGCGACGAGCAGTTACAGT
AGCACGGGACCAAGAACCTCATCAAGTCCAGAACGTTGTCACCCGCACTG
CTGTCCTGTTGGTGTTGTCTTCAAGTTGATACTGACCGAGATTGTGTCAT
CGAGGGCACCCGAGATTGGGTGAGTTTTCCATTCGGTCTGCTTGAAGTTT
TCTTGTACCCGTACAGATCATATGTAAAGGGCACTGATAGGTTCGAACTT
GAACGACCTCAAGGCGGCAGAGAGAGGAGGGGAGGTAGTAGATCGTCCCT
TATCTTTTTTTGTCGCGTCCACGCGTGGAACTGCAGGTACATCCAAGTAC
CCCCTCGAAAACGCGTACAAGTCGTACCTGGCGAAGCATGGGGGAAGGTC
GAACGCGTCGGCGGCCCGAAGGGACATAAGGCTCTCGCGGGGGACCAGCA
TCAGCTCCACGACGACTGCCGAAAAGCCTATCAATCGGCGCAAGACCGCA
AAGAAGCCGTCGAAGAAGCAAGCTTCCGCTACCTGCTGCTCCTTCTACGA
ACACCGTGTGGCATCACCAGCGGCAGAAATCTCCGCCGCTCAGGACCGTC
GTCCCTCCCGGCAAGTCGGAGCCCATCACACCGGCTGATCTCGCACCCTC
TCCGACCGCCCGGTGGCACCCGCGTCGCCGTCGCTGTCGAAGAGGCAGCA
GCCGGCCGCACCCGGCCGCCGACACGCAAGCCAGCAGGAGGCGAGGAAGG
AGCCCCGCCCTCGCCACCAACGGAAGGACAAAGATGGGAAGAAGATCGCT
GC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:83975..86076+

>mRNA_Ecto-sp6_S_contig10.421.1 ID=mRNA_Ecto-sp6_S_contig10.421.1|Name=mRNA_Ecto-sp6_S_contig10.421.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=708bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:83975..86076+ (Ectocarpus species6 EcLAC_371)
ATGTCTCAGAACCTCTTGCGGCGGCGCTGGAGGTATGATATGGCCCTGGA
AGAATCCTCAAGGAATTCTCGTGTCGCCCATGGAGAAACGCCACTACCGA
TGGCTGCTCTTGCCCAACGGTCTGCAGGTCATGGTCATCAGCGACCCGAC
TGCAGCGGCGAGGTCGGTGGACGTAGGAGCAGCACCGGACCAGGTGGGCC
TTCCTGGCCTAGCGCACTTCCTCGAACACATGGTTTTTCTCGGTACATCC
AAGTACCCCCTCGAAAACGCGTACAAGTCGTACCTGGCGAAGCATGGGGG
AAGGTCGAACGCGTCGGCGGCCCGAAGGGACATAAGGCTCTCGCGGGGGA
CCAGCATCAGCTCCACGACGACTGCCGAAAAGCCTATCAATCGGCGCAAG
ACCGCAAAGAAGCCGTCGAAGAAGCAAGCTTCCGCTACCTGCTGCTCCTT
CTACGAACACCGTGTGGCATCACCAGCGGCAGAAATCTCCGCCGCTCAGG
ACCGTCGTCCCTCCCGGCAAGTCGGAGCCCATCACACCGGCTGATCTCGC
ACCCTCTCCGACCGCCCGGTGGCACCCGCGTCGCCGTCGCTGTCGAAGAG
GCAGCAGCCGGCCGCACCCGGCCGCCGACACGCAAGCCAGCAGGAGGCGA
GGAAGGAGCCCCGCCCTCGCCACCAACGGAAGGACAAAGATGGGAAGAAG
ATCGCTGC
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