mRNA_Ecto-sp6_S_contig10.414.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.414.1
Unique NamemRNA_Ecto-sp6_S_contig10.414.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.414.1 vs. uniprot
Match: D7G939_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G939_ECTSI)

HSP 1 Score: 338 bits (868), Expect = 2.560e-112
Identity = 162/165 (98.18%), Postives = 163/165 (98.79%), Query Frame = 1 
Query:    1 CWYFDAGPGGLAIESSKTRHLATVPLPRSSFPPPAEGDNAEDKEDSLEVHVLQGYPIRALVFHTLGKDLEAAGEAIEKCVSFLVEENTPHTVVFSTGRVFVLPRQHLEEPPFAVVPGFPEVSGEVIVTREDDFHTITADQIYEWWRDKVAVDSEHFDRITDGCLA 495
            CWYFDAGPGGLAIESSKTRHLATVPLPRSSF PPAEG+NA DKEDSLEVHVLQGYPIRALVFHTLGKDLEAAGEAIEKCVSFLVEENTPHTVVFSTGRVFVLPRQHLEEPPFAVVPGFPEVSGEVIVTREDDFHTITADQIYEWWRDKVAVDSEHFDRITDGCLA
Sbjct:  390 CWYFDAGPGGLAIESSKTRHLATVPLPRSSFSPPAEGENAADKEDSLEVHVLQGYPIRALVFHTLGKDLEAAGEAIEKCVSFLVEENTPHTVVFSTGRVFVLPRQHLEEPPFAVVPGFPEVSGEVIVTREDDFHTITADQIYEWWRDKVAVDSEHFDRITDGCLA 554
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.414.1 vs. uniprot
Match: A0A6H5JG89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG89_9PHAE)

HSP 1 Score: 327 bits (837), Expect = 1.340e-106
Identity = 157/165 (95.15%), Postives = 160/165 (96.97%), Query Frame = 1 
Query:    1 CWYFDAGPGGLAIESSKTRHLATVPLPRSSFPPPAEGDNAEDKEDSLEVHVLQGYPIRALVFHTLGKDLEAAGEAIEKCVSFLVEENTPHTVVFSTGRVFVLPRQHLEEPPFAVVPGFPEVSGEVIVTREDDFHTITADQIYEWWRDKVAVDSEHFDRITDGCLA 495
            CWYFDAGP GLAIESSKTRHLATVPL R+SF P A+G+NA DKEDSLEVHVLQGYPIRALVFHTLGKDLEAAGEAIEKCVSFLVEENTPHTVVFSTGRVFVLPRQHLEEPPFAVVPGFPEVSGEVIVTREDDFHTITADQIYEWWRDKVAVDSEHFDRITDGCLA
Sbjct:  479 CWYFDAGPRGLAIESSKTRHLATVPLSRASFSPSAKGENAADKEDSLEVHVLQGYPIRALVFHTLGKDLEAAGEAIEKCVSFLVEENTPHTVVFSTGRVFVLPRQHLEEPPFAVVPGFPEVSGEVIVTREDDFHTITADQIYEWWRDKVAVDSEHFDRITDGCLA 643
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.414.1 vs. uniprot
Match: A9VA94_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VA94_MONBE)

HSP 1 Score: 56.6 bits (135), Expect = 2.390e-6
Identity = 33/123 (26.83%), Postives = 56/123 (45.53%), Query Frame = 1 
Query:  133 DSLEVHVLQGYPIRALVFHTLGKDLEAAGEAIEKCVSFLVEENTPHTVVFST-----------GRVFVLPRQHLEEPPFAVVPGFPEVSGEVIVTREDDFHTITADQIYEWWRDKVAVDSEHF 468
            + L +H+L   P+  L           A   +++ +  L +   P  +VFS              V+++ RQ +   P   + GFPEVSGE+I T    +H++TA  I + WRD V +  + +
Sbjct:  267 EELTLHILPDAPVHTLAVEYFRTTATGAIVVVQRIIDLLYQHVLPFNLVFSRYYVNAGISPSRSTVYIVLRQRMHPFPGINI-GFPEVSGELICTSSSIYHSVTAHNISQHWRDNVRLSGDRY 388
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G939_ECTSI2.560e-11298.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG89_9PHAE1.340e-10695.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A9VA94_MONBE2.390e-626.83Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:11607..13811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score344.4
Seed ortholog evalue3e-92
Seed eggNOG ortholog2880.D7G939
Preferred nameGDPGP1
Model size498
KEGG rclassRC00002
KEGG koko:K14190,ko:K15630
KEGG ReactionR07678
KEGG Pathwayko00053,ko01100,ko01110,map00053,map01100,map01110
KEGG ModuleM00114
Hectar predicted targeting categoryother localisation
GOsGO:0000302,GO:0001101,GO:0003674,GO:0003824,GO:0004645,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006950,GO:0006952,GO:0006979,GO:0008150,GO:0008152,GO:0008194,GO:0008905,GO:0008928,GO:0009058,GO:0009108,GO:0009110,GO:0009266,GO:0009408,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009719,GO:0009725,GO:0009753,GO:0009987,GO:0010033,GO:0010035,GO:0010193,GO:0010471,GO:0010472,GO:0010473,GO:0010474,GO:0010475,GO:0016043,GO:0016051,GO:0016053,GO:0016740,GO:0016757,GO:0016758,GO:0016772,GO:0016779,GO:0019318,GO:0019752,GO:0019852,GO:0019853,GO:0033036,GO:0033037,GO:0033554,GO:0035251,GO:0042221,GO:0042364,GO:0042493,GO:0042545,GO:0042742,GO:0043207,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0045229,GO:0046364,GO:0046394,GO:0046527,GO:0046677,GO:0050896,GO:0051179,GO:0051186,GO:0051188,GO:0051641,GO:0051704,GO:0051707,GO:0051716,GO:0052386,GO:0052482,GO:0052542,GO:0052543,GO:0052544,GO:0052545,GO:0070568,GO:0070727,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0080046,GO:0080048,GO:0098542,GO:1901576,GO:1901700
Exons3
EggNOG free text desc.GDP-D-glucose phosphorylase activity
EggNOG OGsKOG2720@1,KOG2720@2759
EC2.7.7.69,2.7.7.78
Cds size498
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348694.02225-CDS-Ecto-sp6_S_contig10:11606..117321682348694.02225-CDS-Ecto-sp6_S_contig10:11606..11732Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 11607..11732 -
1682348694.0337932-CDS-Ecto-sp6_S_contig10:12283..124751682348694.0337932-CDS-Ecto-sp6_S_contig10:12283..12475Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 12284..12475 -
1682348694.0425725-CDS-Ecto-sp6_S_contig10:13631..138111682348694.0425725-CDS-Ecto-sp6_S_contig10:13631..13811Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 13632..13811 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.414.1prot_Ecto-sp6_S_contig10.414.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 11607..13811 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.414.1

>prot_Ecto-sp6_S_contig10.414.1 ID=prot_Ecto-sp6_S_contig10.414.1|Name=mRNA_Ecto-sp6_S_contig10.414.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=166bp
CWYFDAGPGGLAIESSKTRHLATVPLPRSSFPPPAEGDNAEDKEDSLEVH
VLQGYPIRALVFHTLGKDLEAAGEAIEKCVSFLVEENTPHTVVFSTGRVF
VLPRQHLEEPPFAVVPGFPEVSGEVIVTREDDFHTITADQIYEWWRDKVA
VDSEHFDRITDGCLA*
back to top

mRNA from alignment at Ecto-sp6_S_contig10:11607..13811-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.414.1 ID=mRNA_Ecto-sp6_S_contig10.414.1|Name=mRNA_Ecto-sp6_S_contig10.414.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2205bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:11607..13811- (Ectocarpus species6 EcLAC_371)
TGCTGGTACTTTGATGCTGGGCCGGGTGGTCTTGCGATCGAGTCTTCCAA
GACGAGGCACCTTGCAACGGTACCTCTTCCACGCTCCTCCTTCCCCCCCC
CCGCGGAGGGCGACAACGCGGAGGACAAGGAAGACAGCCTTGAGGTTCAC
GTTCTACAAGGATACCCGATCAGGGCACTGGTGAGAGTCGAGACGAGGGC
AGGGCGCGCTGAATATTTCCCACGCACGGTAGCCGTAGGTCATGTCGGGG
TAGGGGAGGAGGTGCGGGCAAGGTCCCCAGGAAAGTACGCGCGGCAGCTA
TAGTGTAGGCGAGTGGCGGGGGGTGTATGGATGGGCGACCGATACTGCTG
AAGGCACGTGGGTTTAGGGGGTGAATACGGCGGAGTGTTAGTCCTAGCGT
TGATGAGTCGTACATAACGAGCTTGAACAATCAACAAAGAAATGGGTTCC
TTCGGGAGGGGTGTGGGCGGATTACGGCCGCCTTTTTTTGCTGTTGTATG
TTTTCTGTTTTTTTGTTTTTGTTTTTGTTTGCGTTCACGGTGTGTGTTGG
CTATTGGTAGTTGCTTTTATCGAGTACGGCTGTGCCGTAACGAGAATTAT
CGTACACATGGGAACAAATAAACACGTTTTCTTTTCGGCAAGGGTTCGTG
CAATCGGCTCGGAGAAAATCGTCTTTCTCGCTACCTTGCGGACAGCCTGC
CCCACAGTGCCTGGTGGGTAATAGGGGGTGGTGGTTCAGTATAACGGGTA
GAGGATATCCGATCTCGTGAAGCTTTCGCATGAACGTTGGGTGTTTGTCT
TTGAACGCTGTCTTTCGCCCAAACCGCTGCACGGACCCGTGGTGTGGTCG
AAACACCGAGCACGAGTTTGGTGTACCCGGTTACGTGCACTTTCCCAGGC
AAACTAATCGCCATATGCATCAGACGAGCGGTAGCCGAAAGGAAACCTAC
TTGTGCTCGCTACGCAACGTACCGAATAACACTAGGTATGCCTGAGGGTG
TCTTTATACGACAATGTGGCCACCGCCTCAGTGACCTACTTCCCTTCCAT
GTATTCCAGATTGGACGAAGCACGCTGATGTGTTTCAAAATGAGCAATGG
CCTGAGGCCCTAGAGATACATCCGTGCTGTTCCTTTAAGGACAACACACC
GGATAGGACGAAGGGAATGATCGGAAAGTGTTGTTACCAGTCGAAGCAAT
GACCCAAGTAGGCACACGGGTCCTCGCCGTTCGTTCACATGGCAGTACTT
ACAGCAGGAGTGGCCGGAACAGTCACAAACTTCTCCATGTCGGCAAATGG
CATGGTGTAAGTAACGTCTGCACCCACATCCTCCAGGTGTTCCACACGCT
GGGGAAGGATCTGGAGGCCGCAGGCGAGGCGATCGAGAAGTGCGTCAGCT
TCCTCGTCGAGGAGAACACGCCGCACACCGTGGTCTTCAGCACGGGGAGG
GTCTTCGTGCTCCCTCGACAGCACCTCGAGGAGCCGCCGTTCGCCGTGGT
TCCGGGCTTTCCCGAGGTCTCGGGCGAGGTGAGCTCACACAGCGGGGAGA
CAGACTTACGCGTGTCTTGCGGTATTGCACTGCTGCAAGAACGGACACGG
CGTTGGTGCTAATGGAAGAGGTGTAATGGGGAGGGGGTCGGGTGATATGC
GGCAGCGTTAGGGGGGGAAGAACGGGAAGAGGAGCGGGAAGGCGGCTATG
TGAGGAGGACTGATGTGTTGAAATTTTGCTCCGCTGTTTCTTTGAAACTG
GTCGTCTTGGTGATTGTATGTGTGCGAGCTGACGACTTCTTGCCGTTTCC
GGGTGTTGAAAGAAATTGGTTCTTGGATGTTGTCGTTATTATTGTTTGCT
TGCTCATGAATACCTCCTTCGGAGCTCTCCCCTGTACATATTCCCCGTAT
TCTGCGCTAGTCCAACAGGGTGATACAGGTTTCCCTGGCCGTGAGCTTCC
CCAGAACGAGGCACATGCGTTTGCTTGGCATGACAGGTTGAGGTAAGGCC
CCACCGTCGTATGTGGATTGATTCACTGAGCCCCCACCCCGCCGTGTGTG
TGCGTGCCGTGTGTGGCCGACAAACAAAGGTCATCGTCACGAGGGAAGAT
GATTTCCACACGATCACCGCCGACCAGATTTACGAGTGGTGGCGCGACAA
GGTGGCGGTCGACTCCGAGCACTTCGACCGCATCACCGATGGATGCCTTG
CGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:11607..13811-

>mRNA_Ecto-sp6_S_contig10.414.1 ID=mRNA_Ecto-sp6_S_contig10.414.1|Name=mRNA_Ecto-sp6_S_contig10.414.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:11607..13811- (Ectocarpus species6 EcLAC_371)
TGCTGGTACTTTGATGCTGGGCCGGGTGGTCTTGCGATCGAGTCTTCCAA
GACGAGGCACCTTGCAACGGTACCTCTTCCACGCTCCTCCTTCCCCCCCC
CCGCGGAGGGCGACAACGCGGAGGACAAGGAAGACAGCCTTGAGGTTCAC
GTTCTACAAGGATACCCGATCAGGGCACTGGTGTTCCACACGCTGGGGAA
GGATCTGGAGGCCGCAGGCGAGGCGATCGAGAAGTGCGTCAGCTTCCTCG
TCGAGGAGAACACGCCGCACACCGTGGTCTTCAGCACGGGGAGGGTCTTC
GTGCTCCCTCGACAGCACCTCGAGGAGCCGCCGTTCGCCGTGGTTCCGGG
CTTTCCCGAGGTCTCGGGCGAGGTCATCGTCACGAGGGAAGATGATTTCC
ACACGATCACCGCCGACCAGATTTACGAGTGGTGGCGCGACAAGGTGGCG
GTCGACTCCGAGCACTTCGACCGCATCACCGATGGATGCCTTGCGTAG
back to top