mRNA_Ecto-sp13_S_contig17000.4994.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17000.4994.1
Unique NamemRNA_Ecto-sp13_S_contig17000.4994.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17000.4994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17000contigEcto-sp13_S_contig17000:2867..3491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size625
Hectar predicted targeting categorysignal peptide
Exons1
Cds size318
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462891.3258584-UTR-Ecto-sp13_S_contig17000:2866..31111681462891.3258584-UTR-Ecto-sp13_S_contig17000:2866..3111Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17000 2867..3111 +
1681462891.3569374-UTR-Ecto-sp13_S_contig17000:3429..34911681462891.3569374-UTR-Ecto-sp13_S_contig17000:3429..3491Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17000 3430..3491 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462891.3476598-CDS-Ecto-sp13_S_contig17000:3111..34291681462891.3476598-CDS-Ecto-sp13_S_contig17000:3111..3429Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17000 3112..3429 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17000.4994.1prot_Ecto-sp13_S_contig17000.4994.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17000 3112..3429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17000.4994.1

>prot_Ecto-sp13_S_contig17000.4994.1 ID=prot_Ecto-sp13_S_contig17000.4994.1|Name=mRNA_Ecto-sp13_S_contig17000.4994.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=106bp
MHAPLFFVVSIVHAAGELLGGLVGVPLDALKFILGVSFFCFQEERASKAW
VPDVTYTHSQLSRMDSLPFYPPPDPGGKREAYACLSVETTFLTKPGGSDA
KCTSL*
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mRNA from alignment at Ecto-sp13_S_contig17000:2867..3491+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17000.4994.1 ID=mRNA_Ecto-sp13_S_contig17000.4994.1|Name=mRNA_Ecto-sp13_S_contig17000.4994.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=625bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17000:2867..3491+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTAGCTGGATTTTGTCGCCAATGCAAATGCGATAAAAAGAGATGGGTGC
GTTCTTAAACGTGACTCACGCTCTCAAGGGCGGTTTGGTCTGAAAGAGTC
GACGCGGACTGCCGTATGTGAGTTCGACGGTGCGGAGCTTTCTCGAAGAG
ATACATCTAGCTTTGAAATGCCTGAAACAGGTCGAAAATGATTTTTTTTG
GCAGCCCGTCTTCACAAGTGTGCTTCCGCGCATGTATTCAACAACATGCA
CGCGCCGTTGTTTTTTGTTGTGTCTATCGTTCACGCAGCAGGAGAGCTTT
TGGGAGGGTTGGTGGGTGTGCCTCTCGATGCCCTGAAGTTCATTCTCGGG
GTTTCTTTTTTTTGTTTTCAGGAGGAGCGAGCGTCGAAGGCCTGGGTGCC
AGATGTAACGTACACACATTCCCAACTTTCCAGGATGGACTCACTCCCAT
TCTATCCGCCGCCTGACCCAGGTGGGAAGAGAGAGGCGTACGCATGTCTC
TCCGTAGAAACGACGTTTTTGACGAAGCCTGGAGGGAGTGACGCGAAGTG
CACTTCGTTGTGAGATGTGCGTGAGGGAAGGGCGGCGTTGAGTGAAGGTA
CTTTTTGGTGATCCTTCCTCCAGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17000:2867..3491+

>mRNA_Ecto-sp13_S_contig17000.4994.1 ID=mRNA_Ecto-sp13_S_contig17000.4994.1|Name=mRNA_Ecto-sp13_S_contig17000.4994.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17000:2867..3491+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACGCGCCGTTGTTTTTTGTTGTGTCTATCGTTCACGCAGCAGGAGA
GCTTTTGGGAGGGTTGGTGGGTGTGCCTCTCGATGCCCTGAAGTTCATTC
TCGGGGTTTCTTTTTTTTGTTTTCAGGAGGAGCGAGCGTCGAAGGCCTGG
GTGCCAGATGTAACGTACACACATTCCCAACTTTCCAGGATGGACTCACT
CCCATTCTATCCGCCGCCTGACCCAGGTGGGAAGAGAGAGGCGTACGCAT
GTCTCTCCGTAGAAACGACGTTTTTGACGAAGCCTGGAGGGAGTGACGCG
AAGTGCACTTCGTTGTGA
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