prot_Ecto-sp13_S_contig17.4980.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig17.4980.1
Unique Name	prot_Ecto-sp13_S_contig17.4980.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	565

Homology

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BLAST of mRNA_Ecto-sp13_S_contig17.4980.1 vs. uniprot
Match: A0A6H5KL52_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL52_9PHAE)

HSP 1 Score: 679 bits (1752), Expect = 1.480e-239
Identity = 481/567 (84.83%), Postives = 493/567 (86.95%), Query Frame = 0

Query:    1 MEAAATAGESDARAAGRSHPEAEMIAAARGSDGTPVRLSVTDVYNRSSEVFSLETTITIGDLKRLLQEAFVGRPAPQQQRLIFRGKQCKEETQQLGHLMRGLDLSGQHNMHMIVSQPVEQD-PSGDSTADVARAPTAQQSSLPQQRPQQQPRLQTPSLRSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXNERDERIQLSQTQLEQLQXXXXXXXXXXXXXXXXHRQRFSFLSAQSRALTQQRQYRHRTPTATYSSPAPXXXXXXXXXXX-YTEVSARAATRALGGNMPGPAGVGGVRDVTGPPPEGHIPAAGLGQEGEVGRGNLVDPAPNAPDIGREARSWFKMVFQCMGVILVFGIDADGWVLALLALGGLIAFLFRTGLLKEMLGSGREGGGLWKKLCTGATVITEGGGILFDARYFFSAFFFSLFPKWQPVRSPEAIAVQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVAAVRVQTEQTLREAVAATAAAXXXXTPA-DHGAEETDGAVEDXXPXXXXXXXXXXXXATDTSPNAEPESEVDPAALD 564
            M AAATAGESDARAAGRSHPEAEMIAAARGSDGTPV+L VTDVY+RSS+VFSLETTITIGDLKRLLQEAFV RPAPQQQRLIFRGKQCKEETQQLGH+MRGLDLSGQHNMH+IVSQPVEQ+ P+G STADVAR PTAQQSSLPQQRP         SLRSSS          XXXXXXXXXX       NER E +QLSQTQLEQLQ XXXXXXXXXXXXXXXHRQRF+FLSAQSRALTQQRQYRHRTPTATYSSP  XXXXXXXXXXX YTEVSARAATRALGGNMPGPAG GGVRDVTG PPEGHIPAAGLGQEGEV RGNLVDPAPNAPDIGREARSW KMVFQCMGVILVFGIDADGWVLALLALGGL AFLFRTGLLKE+LGSGREGGGLWKKLCTGATVITEGGGIL DARYFFSAFFFSLFPKWQPVRSPEAIAVQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      VAAVRVQ EQTLREAVAA    XXXXTPA DHGAEE +GAVED  P            ATD SP+A PESEVDPA LD
Sbjct:    1 MAAAATAGESDARAAGRSHPEAEMIAAARGSDGTPVKLFVTDVYHRSSKVFSLETTITIGDLKRLLQEAFVSRPAPQQQRLIFRGKQCKEETQQLGHIMRGLDLSGQHNMHLIVSQPVEQELPAGGSTADVARTPTAQQSSLPQQRPXXXXXXXXXSLRSSSASPAAPHDTAXXXXXXXXXXS------NERPECVQLSQTQLEQLQRXXXXXXXXXXXXXXXHRQRFNFLSAQSRALTQQRQYRHRTPTATYSSPXXXXXXXXXXXXXXYTEVSARAATRALGGNMPGPAGGGGVRDVTGAPPEGHIPAAGLGQEGEVWRGNLVDPAPNAPDIGREARSWLKMVFQCMGVILVFGIDADGWVLALLALGGLFAFLFRTGLLKEILGSGREGGGLWKKLCTGATVITEGGGILLDARYFFSAFFFSLFPKWQPVRSPEAIAVQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------VAAVRVQAEQTLREAVAAXXXXXXXXTPAADHGAEEPNGAVEDAVPATDAVAVTSE--ATDASPSAVPESEVDPATLD 553

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BLAST of mRNA_Ecto-sp13_S_contig17.4980.1 vs. uniprot
Match: D7G6U9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U9_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 6.810e-53
Identity = 93/97 (95.88%), Postives = 94/97 (96.91%), Query Frame = 0

Query:  342 MVFQCMGVILVFGIDADGWVLALLALGGLIAFLFRTGLLKEMLGSGREGGGLWKKLCTGATVITEGGGILFDARYFFSAFFFSLFPKWQPVRSPEAI 438
            MVFQCMGVILVFGIDA+GWVLALLALGGL AFLFRTGLLKEMLGSGREGGGLWKKLCTGATVI EGGGIL DARYFFSAFFFSLFPKWQPVRSPEAI
Sbjct:    1 MVFQCMGVILVFGIDANGWVLALLALGGLFAFLFRTGLLKEMLGSGREGGGLWKKLCTGATVIMEGGGILLDARYFFSAFFFSLFPKWQPVRSPEAI 97

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig17.4980.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig17.4980.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KL52_9PHAE	1.480e-239	84.83	Ubiquitin-like domain-containing protein n=1 Tax=E...	[more]
D7G6U9_ECTSI	6.810e-53	95.88	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 188..233
None	No IPR available	COILS	Coil	Coil	coord: 451..485
None	No IPR available	GENE3D	3.10.20.90		coord: 30..121 e-value: 2.8E-10 score: 41.8
None	No IPR available	PANTHER	PTHR12943:SF27	HOMOCYSTEINE-INDUCED ENDOPLASMIC RETICULUM PROTEIN, ISOFORM A	coord: 18..502
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 338..355
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 356..360
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..337
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 380..564
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 361..379
IPR039751	Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 /2	PANTHER	PTHR12943	FAMILY NOT NAMED	coord: 18..502
IPR000626	Ubiquitin domain	PROSITE	PS50053	UBIQUITIN_2	coord: 36..117 score: 8.982
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 36..117

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig17	contig	Ecto-sp13_S_contig17:3610..6296 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig17.4980.1	mRNA_Ecto-sp13_S_contig17.4980.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig17 3001..8092 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig17.4980.1 ID=prot_Ecto-sp13_S_contig17.4980.1|Name=mRNA_Ecto-sp13_S_contig17.4980.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=565bp
MEAAATAGESDARAAGRSHPEAEMIAAARGSDGTPVRLSVTDVYNRSSEV
FSLETTITIGDLKRLLQEAFVGRPAPQQQRLIFRGKQCKEETQQLGHLMR
GLDLSGQHNMHMIVSQPVEQDPSGDSTADVARAPTAQQSSLPQQRPQQQP
RLQTPSLRSSSAAPAAPPDTATAAAAAAAAAAAAAASSNERDERIQLSQT
QLEQLQRQYEQALRENEKALEEHRQRFSFLSAQSRALTQQRQYRHRTPTA
TYSSPAPPLQQHQQQQQQYTEVSARAATRALGGNMPGPAGVGGVRDVTGP
PPEGHIPAAGLGQEGEVGRGNLVDPAPNAPDIGREARSWFKMVFQCMGVI
LVFGIDADGWVLALLALGGLIAFLFRTGLLKEMLGSGREGGGLWKKLCTG
ATVITEGGGILFDARYFFSAFFFSLFPKWQPVRSPEAIAVQAAAQAATQA
AAQAQAAAQAALQVAAQAQAETQAAAQAQAEAQAEALVAAVRVQTEQTLR
EAVAATAAAAAATTPADHGAEETDGAVEDAVPAVETEAVAVTSEATDTSP
NAEPESEVDPAALD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR039751	HERPUD1/2
IPR000626	Ubiquitin_dom
IPR029071	Ubiquitin-like_domsf