mRNA_Ecto-sp13_S_contig16993.4978.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16993.4978.1
Unique NamemRNA_Ecto-sp13_S_contig16993.4978.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16993.4978.1 vs. uniprot
Match: A0A6H5JSP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSP1_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 4.230e-61
Identity = 105/140 (75.00%), Postives = 108/140 (77.14%), Query Frame = 1 
Query:    7 FVVQENRWCGVWECTLSMSESWRLRLDNGSIIKQRPSILVLDDFKCYRDKAFIDDLGKRCNTSVILIPGGLTPLLQPLDRVLNKQMKRLLRAKYTAYTATAVADPTMGKRNPPGRPWDGVYVVPAGVGSNRPRHGQDLLQ 426
            F  QEN W    EC  SMSE WRLR +NGSIIKQRPS LVLDD K +RDKAFIDDLGKRCNTSV LIPGGL PLLQPLDR+LNKQ KRLLRAKYTAYTATAVA P           WDGVYVVP GV SN PRHGQDLLQ
Sbjct:   88 FGAQENSWYDARECAFSMSERWRLRPNNGSIIKQRPSNLVLDDLKGHRDKAFIDDLGKRCNTSVSLIPGGLAPLLQPLDRMLNKQTKRLLRAKYTAYTATAVAGP-----------WDGVYVVPEGVASNHPRHGQDLLQ 216
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BLAST of mRNA_Ecto-sp13_S_contig16993.4978.1 vs. uniprot
Match: A0A6H5L467_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L467_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 9.630e-42
Identity = 76/117 (64.96%), Postives = 88/117 (75.21%), Query Frame = 1 
Query:    1 MSFVVQENRWCGVWECTLSMSESWRLRLDNGSIIKQRPSILVLDDFKCYRDKAFIDDLGKRCNTSVILIPGGLTPLLQPLDRVLNKQMKRLLRAKYTAYTATAVADPTMGKRNPPGR 351
            MSF VQE  W    EC   +S SW LR +NGSI++QRP ILVLDDFKC++D++FI  L    NT VI IPGGL PLLQPLDR+LNKQMKRLLR KYTAY+A+AVAD   GK+ PP R
Sbjct:    1 MSFGVQEKSWSDQRECNGWISGSWNLRPNNGSIVQQRPCILVLDDFKCHKDESFIAALKNDANTIVIFIPGGLAPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSGKQKPPER 117
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BLAST of mRNA_Ecto-sp13_S_contig16993.4978.1 vs. uniprot
Match: A0A6H5KRZ1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ1_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 4.760e-40
Identity = 76/117 (64.96%), Postives = 88/117 (75.21%), Query Frame = 1 
Query:    1 MSFVVQENRWCGVWECTLSMSESWRLRLDNGSIIKQRPSILVLDDFKCYRDKAFIDDLGKRCNTSVILIPGGLTPLLQPLDRVLNKQMKRLLRAKYTAYTATAVADPTMGKRNPPGR 351
            MSF VQE  WC + EC L + +SW+LR +NGSI++QR  ILVLDDFKC++D  FI  L +  NT VI IPGGLTPLLQPLDR+LNKQMKRLLR  YTA+TA A  DP  GK  PPGR
Sbjct:  337 MSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTAKAARDPKTGKLAPPGR 453
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BLAST of mRNA_Ecto-sp13_S_contig16993.4978.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.200e-39
Identity = 76/117 (64.96%), Postives = 90/117 (76.92%), Query Frame = 1 
Query:    1 MSFVVQENRWCGVWECTLSMSESWRLRLDNGSIIKQRPSILVLDDFKCYRDKAFIDDLGKRCNTSVILIPGGLTPLLQPLDRVLNKQMKRLLRAKYTAYTATAVADPTMGKRNPPGR 351
            MSF VQE  W    EC   +S SW+LR +NGSI++QRP ILVLDDFKC++D+ +I  L +  NT VI+IPGGLTPLLQPLDR+LNKQMKRLLR KYTAY+A+AVAD   GK  PP R
Sbjct:  217 MSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSGKLKPPER 333
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BLAST of mRNA_Ecto-sp13_S_contig16993.4978.1 vs. uniprot
Match: A0A6H5L8W0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8W0_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 1.220e-39
Identity = 75/117 (64.10%), Postives = 86/117 (73.50%), Query Frame = 1 
Query:    1 MSFVVQENRWCGVWECTLSMSESWRLRLDNGSIIKQRPSILVLDDFKCYRDKAFIDDLGKRCNTSVILIPGGLTPLLQPLDRVLNKQMKRLLRAKYTAYTATAVADPTMGKRNPPGR 351
            MSF VQE  W    EC   +S SW+ R +NGSI++QRP ILVLDDFKC +D+ FI  L +  NT  I IPGGLTPLLQPLDRVLNKQMKR+LR KYTAY+A+AVAD   GK  PP R
Sbjct:    1 MSFGVQEKSWSDQRECNGWISGSWKFRPNNGSIVQQRPCILVLDDFKCRKDEGFIAALKRDANTIAIFIPGGLTPLLQPLDRVLNKQMKRMLRGKYTAYSASAVADARSGKLKPPER 117
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16993.4978.1 vs. uniprot
Match: A0A6H5JBJ7_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ7_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 1.730e-38
Identity = 75/117 (64.10%), Postives = 86/117 (73.50%), Query Frame = 1 
Query:    1 MSFVVQENRWCGVWECTLSMSESWRLRLDNGSIIKQRPSILVLDDFKCYRDKAFIDDLGKRCNTSVILIPGGLTPLLQPLDRVLNKQMKRLLRAKYTAYTATAVADPTMGKRNPPGR 351
            MSF VQE  W    EC   +S SW+LR +NGSII+QR  ILVLDDFKC++ + FI  L +  NT VI IPGG TPLLQPLDR+LNKQMKRLLR KYTAY+A+AVAD   GK  PP R
Sbjct:    1 MSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIIQQRLCILVLDDFKCHKGEGFIAPLKRDANTIVIFIPGGWTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSGKLKPPER 117
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16993.4978.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 2.210e-38
Identity = 74/117 (63.25%), Postives = 87/117 (74.36%), Query Frame = 1 
Query:    1 MSFVVQENRWCGVWECTLSMSESWRLRLDNGSIIKQRPSILVLDDFKCYRDKAFIDDLGKRCNTSVILIPGGLTPLLQPLDRVLNKQMKRLLRAKYTAYTATAVADPTMGKRNPPGR 351
            MSF VQE  WC + E  L + +SW+LR +NGS+++QR  ILVLDDFKC++D  FI  L +  NT VI IPGGLTPLLQPLDR+LNKQMKRLLR  YTA+TA A  DP  GK  PPGR
Sbjct:  330 MSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTAKAARDPKTGKLAPPGR 446
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BLAST of mRNA_Ecto-sp13_S_contig16993.4978.1 vs. uniprot
Match: A0A6H5L4U1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4U1_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 2.790e-38
Identity = 73/117 (62.39%), Postives = 87/117 (74.36%), Query Frame = 1 
Query:    1 MSFVVQENRWCGVWECTLSMSESWRLRLDNGSIIKQRPSILVLDDFKCYRDKAFIDDLGKRCNTSVILIPGGLTPLLQPLDRVLNKQMKRLLRAKYTAYTATAVADPTMGKRNPPGR 351
            MSF VQ   W    EC   +S SW+LR +NGSI++QRP ILVLDDFKC++D+ FI  L +  NT +I IPGG+T LLQPLDR+LNKQMKRLLR KYTAY+A+AVAD   GK  PP R
Sbjct:   78 MSFGVQGKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIIIFIPGGMTLLLQPLDRLLNKQMKRLLRGKYTAYSASAVADARSGKLKPPER 194
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16993.4978.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 2.840e-38
Identity = 76/117 (64.96%), Postives = 88/117 (75.21%), Query Frame = 1 
Query:    1 MSFVVQENRWCGVWECTLSMSESWRLRLDNGSIIKQRPSILVLDDFKCYRDKAFIDDLGKRCNTSVILIPGGLTPLLQPLDRVLNKQMKRLLRAKYTAYTATAVADPTMGKRNPPGR 351
            MSF VQE  W    EC   +S SW+LR +NGSI++QRP ILVLDDFKC++D+ FI  L +  NT VI IPG LTPLLQPLDR+LNKQMKRLLR KYTAY+A+AVAD   GK  PP R
Sbjct:  217 MSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSASAVADARSGKLKPPER 333
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16993.4978.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 8.070e-38
Identity = 74/117 (63.25%), Postives = 86/117 (73.50%), Query Frame = 1 
Query:    1 MSFVVQENRWCGVWECTLSMSESWRLRLDNGSIIKQRPSILVLDDFKCYRDKAFIDDLGKRCNTSVILIPGGLTPLLQPLDRVLNKQMKRLLRAKYTAYTATAVADPTMGKRNPPGR 351
            MSF VQE  WC + EC L + +SW+LR +NGSI++QR  ILVLDDFKC++D  FI  L +  NT VI IPGGL PL QPLDR+LNKQMKRLLR  YTA+TA A  DP  GK  PPGR
Sbjct:  371 MSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTAHTAKAARDPKTGKLVPPGR 487
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16993.4978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSP1_9PHAE4.230e-6175.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L467_9PHAE9.630e-4264.96DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ1_9PHAE4.760e-4064.96DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JUK2_9PHAE1.200e-3964.96DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L8W0_9PHAE1.220e-3964.10DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JBJ7_9PHAE1.730e-3864.10DDE-1 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5KE45_9PHAE2.210e-3863.25DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L4U1_9PHAE2.790e-3862.39DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE2.840e-3864.96DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE8.070e-3863.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16993contigEcto-sp13_S_contig16993:245..1005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score139.0
Seed ortholog evalue1.7e-30
Seed eggNOG ortholog2880.D7FXD3
Preferred namePOGK
Model size761
KEGG koko:K09228
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.DNA binding
EggNOG OGsKOG3105@1,KOG3105@2759
Cds size441
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462889.2837343-UTR-Ecto-sp13_S_contig16993:244..5641681462889.2837343-UTR-Ecto-sp13_S_contig16993:244..564Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16993 245..564 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462889.2929835-CDS-Ecto-sp13_S_contig16993:564..10051681462889.2929835-CDS-Ecto-sp13_S_contig16993:564..1005Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16993 565..1005 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16993.4978.1prot_Ecto-sp13_S_contig16993.4978.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16993 565..1005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16993.4978.1

>prot_Ecto-sp13_S_contig16993.4978.1 ID=prot_Ecto-sp13_S_contig16993.4978.1|Name=mRNA_Ecto-sp13_S_contig16993.4978.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp
MSFVVQENRWCGVWECTLSMSESWRLRLDNGSIIKQRPSILVLDDFKCYR
DKAFIDDLGKRCNTSVILIPGGLTPLLQPLDRVLNKQMKRLLRAKYTAYT
ATAVADPTMGKRNPPGRPWDGVYVVPAGVGSNRPRHGQDLLQRSAG*
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mRNA from alignment at Ecto-sp13_S_contig16993:245..1005-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16993.4978.1 ID=mRNA_Ecto-sp13_S_contig16993.4978.1|Name=mRNA_Ecto-sp13_S_contig16993.4978.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=761bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16993:245..1005- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTTTGTTGTGCAGGAGAACAGGTGGTGTGGCGTGTGGGAGTGCAC
CCTTTCGATGTCGGAGAGCTGGAGGCTTCGCCTCGACAACGGAAGCATCA
TCAAGCAGCGCCCGAGCATCTTGGTGTTGGACGACTTCAAGTGTTACCGT
GACAAGGCCTTTATCGACGACCTCGGGAAAAGGTGCAATACCAGCGTCAT
CCTGATCCCGGGCGGGCTGACACCTCTACTCCAGCCGCTGGACCGCGTGC
TCAACAAGCAGATGAAGCGGCTACTGCGGGCGAAGTACACCGCCTACACC
GCCACCGCGGTTGCCGACCCCACTATGGGCAAGCGGAACCCGCCGGGCCG
GCCGTGGGATGGTGTCTACGTTGTGCCAGCAGGCGTGGGCAGCAATCGCC
CCCGACACGGTCAAGACTTGCTTCAACGATCTGCGGGCTAACGCTTGCGC
TCGACGGCAGCGAGGACCACGCCTGGTGCATGCACAATTTCGGTGAGGGT
TACCGCGAGCTGCTCCAGAAGCAGCGCGTCGAGTGGGAGAAAGCACATCC
CGGCGTTTCGCTGCCCCCGCTCCAGCTACCAGAGGGACCCGACGGCGAGT
CCATCGGCACCAGCCCCATCACGGCTGCAGAGAAGGAGGTTCAAGGGCGT
CTGCTACTTCCTGCCGATGGACAGGAAAGCGACAGCGATGTGGAGGTGCT
GGAATATGACAGCGATCTAGAGTTCTTGGGCATGTCGGGGGGTGGGGAGA
AGGAACCAGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16993:245..1005-

>mRNA_Ecto-sp13_S_contig16993.4978.1 ID=mRNA_Ecto-sp13_S_contig16993.4978.1|Name=mRNA_Ecto-sp13_S_contig16993.4978.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16993:245..1005- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTTTGTTGTGCAGGAGAACAGGTGGTGTGGCGTGTGGGAGTGCAC
CCTTTCGATGTCGGAGAGCTGGAGGCTTCGCCTCGACAACGGAAGCATCA
TCAAGCAGCGCCCGAGCATCTTGGTGTTGGACGACTTCAAGTGTTACCGT
GACAAGGCCTTTATCGACGACCTCGGGAAAAGGTGCAATACCAGCGTCAT
CCTGATCCCGGGCGGGCTGACACCTCTACTCCAGCCGCTGGACCGCGTGC
TCAACAAGCAGATGAAGCGGCTACTGCGGGCGAAGTACACCGCCTACACC
GCCACCGCGGTTGCCGACCCCACTATGGGCAAGCGGAACCCGCCGGGCCG
GCCGTGGGATGGTGTCTACGTTGTGCCAGCAGGCGTGGGCAGCAATCGCC
CCCGACACGGTCAAGACTTGCTTCAACGATCTGCGGGCTAA
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