mRNA_Ecto-sp13_S_contig1699.4976.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1699.4976.1
Unique NamemRNA_Ecto-sp13_S_contig1699.4976.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1699.4976.1 vs. uniprot
Match: A0A6H5K9G4_9PHAE (SUI1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9G4_9PHAE)

HSP 1 Score: 272 bits (696), Expect = 8.510e-91
Identity = 165/172 (95.93%), Postives = 165/172 (95.93%), Query Frame = 1 
Query:    1 VCGLPPEYCEYGSTGEACRAWAEANCPEVLAIEEGIAGLEVQGGAGXXXXXXXXXXXXXXXXXXXXGKKVRIAKPGGXXXXXXEQRVVIGRLSRNRRKFVTVVGGLDTFPDVKIKDAAKKIGKQFACGSSVSKAPSGAEEVVIQGDVLMDLPGFLEATLNIPAAKISVLSTS 516
            VCGLPPEYCEYGSTGEACRAWAEANCPEVLAIEEGIAGLEVQG  G   XXXXXXXXXXXXXXXXXGKKVRIAKPG XXXXXXEQRVVIGRLSRNRRKFVTVVGGLDTFPDVKIKDAAKKIGKQFACGSSVSKAPSGAEEVVIQGDVLMDLPGFLE TLNIPAAKISVLSTS
Sbjct:   41 VCGLPPEYCEYGSTGEACRAWAEANCPEVLAIEEGIAGLEVQGDEGGEAXXXXXXXXXXXXXXXXXGKKVRIAKPGXXXXXXXEQRVVIGRLSRNRRKFVTVVGGLDTFPDVKIKDAAKKIGKQFACGSSVSKAPSGAEEVVIQGDVLMDLPGFLETTLNIPAAKISVLSTS 212
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1699.4976.1 vs. uniprot
Match: A0A835Z4W5_9STRA (Putative RNA binding protein Tma22 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4W5_9STRA)

HSP 1 Score: 138 bits (348), Expect = 5.790e-38
Identity = 102/196 (52.04%), Postives = 122/196 (62.24%), Query Frame = 1 
Query:    1 VCGLPPEYCEYGSTGEA--CRAWAEANCPE-------------VLAIEEGIA-GLEVQGGAGXXXXXXXXXXXXXXXXXXXXG-----------KKVRIAKPGGXXXXXXEQRVVIGRLSRNRRKFVTVVGGLDTFPDVKIKDAAKKIGKQFACGSSVSKAPSGAEEVVIQGDVLMDLPGFLEATLNIPAAKISVL 507
            VC LP EYC YG   +   C+AWAE NCP+             V A  EG A G E +  A XXXXXXXXXXXXXXXXXX              +  R A+         E  V IGR+SRN+RKF+T+VGGL  FP VK+KDAAK++G+QFACG SV+K  SGAEE+ IQGDVL DLPGFLE+   IPA +IS++
Sbjct:   19 VCTLPLEYCSYGPPAQQPLCKAWAEENCPDQTEGAAQKLEGLKVSANAEGAAEGAEPEAAATXXXXXXXXXXXXXXXXXXEAAGDATAAGAEGDEPKRAARKAPKKKAAPEPMVKIGRVSRNKRKFITIVGGLGAFPHVKLKDAAKQMGRQFACGCSVNKTASGAEEITIQGDVLYDLPGFLESAFGIPAERISIV 214
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1699.4976.1 vs. uniprot
Match: A0A6V2SCS0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2SCS0_HETAK)

HSP 1 Score: 120 bits (301), Expect = 2.550e-30
Identity = 88/169 (52.07%), Postives = 110/169 (65.09%), Query Frame = 1 
Query:    1 VCGLPPEYCEYGSTGEACRAWAEANCPEVLAIEEGIAGLEVQGGAGXXXXXXXXXXXXXXXXXXXXGKKVRIAKPGGXXXXXXEQRVVIGRLSRNRRKFVTVVGGLDTFPDVKIKDAAKKIGKQFACGSSVSKAPSGAEEVVIQGDVLMDLPGFLEATLNIPAAKISVL 507
            VCGLPPEYCE G + E C  W EANCPE+LA +        +    XXXXXXXXXXXXXXXXXXXX KK     PG         + VI   +RNRRK++T + GLD+FP VK+K AAK  G++FA G++V+  PSG +E+VIQGDV+ D+P  LE    IP+  I +L
Sbjct:  110 VCGLPPEYCENGPSYELCLPWIEANCPELLAAKA------EEEAXXXXXXXXXXXXXXXXXXXXXXXKKAGPTGPG---------KCVISLSTRNRRKYITTITGLDSFPGVKLKVAAKACGRKFASGAAVNTTPSGEKEIVIQGDVVYDVPNLLEGEFQIPSECIFIL 263
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1699.4976.1 vs. uniprot
Match: A0A6S8UAK3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8UAK3_9STRA)

HSP 1 Score: 103 bits (258), Expect = 6.990e-25
Identity = 65/164 (39.63%), Postives = 86/164 (52.44%), Query Frame = 1 
Query:    7 GLPPEYCEYGSTGEACRAWAEANCPEVLAIEEGIAGLEVQGGAGXXXXXXXXXXXXXXXXXXXXGKKVRIAKPGGXXXXXXEQRVVIGRLSRNRRKFVTVVGGLDTFPDVKIKDAAKKIGKQFACGSSVSKAPSGAEEVVIQGDVLMDLPGFLEATLNIPAAKI 498
            GLPPEYCEY    +  R W   +CP +L  E+    +  +G  G                     KK  I+          +Q+V+I +  RN++K VT V GL+TF  VK+KDAAK  GK+FA  SSV +  SG +E+VIQGDV+ DLP  LE    IP +KI
Sbjct:   29 GLPPEYCEYYPDYDKTRPWIAEHCPHLLKGEDEAGDVGKKGKRGGGVI-----------------KKKTISAD--------KQKVIISKEVRNKKKAVTSVEGLETF-SVKLKDAAKVFGKKFAASSSVKEKDSGGQEIVIQGDVIWDLPALLEKEYKIPKSKI 166
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1699.4976.1 vs. uniprot
Match: A0A388KVD0_CHABU (Translation machinery-associated protein 22 n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KVD0_CHABU)

HSP 1 Score: 105 bits (263), Expect = 8.160e-25
Identity = 65/168 (38.69%), Postives = 87/168 (51.79%), Query Frame = 1 
Query:    1 VCGLPPEYCEYGSTGEACRAWAEANCPEV---LAIEE-------GIAGLEVQGGAGXXXXXXXXXXXXXXXXXXXXGKKVRIAKPGGXXXXXXEQRVVIGRLSRNRRKFVTVVGGLDTFPDVKIKDAAKKIGKQFACGSSVSKAPSGAEEVVIQGDVLMDLPGFLEAT 474
            VCGLPPEYCE+G     C+ W   NCP++   LA E         ++  E  GG+G                      +     PGG         VVI ++ RN+RK VTVV GL+ F  VK+ DAAKK GK+FA G+SV K P+  E++ +QGD++ DL  F+ AT
Sbjct:   72 VCGLPPEYCEFGPDFVKCKPWLLENCPDLYPDLAKEAEEKLGRLSLSAAEGGGGSGEADGGTKEDPAGTSARQKEPEPEQVQRLPGGKVKKKERPSVVIEKIVRNKRKSVTVVKGLEMF-GVKLSDAAKKFGKKFASGASVVKGPTDKEQIDVQGDIMYDLVDFITAT 238
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1699.4976.1 vs. uniprot
Match: A0A7S2RD20_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RD20_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.750e-24
Identity = 63/176 (35.80%), Postives = 91/176 (51.70%), Query Frame = 1 
Query:    1 VCGLPPEYCEYGSTGEACRAWAEANCPEVL---AIEEGIAGLEVQGGAGXXXXXXXXXXXXXXXXXXXXGKKVRIAKPGGXXXXXX-----EQRVVIGRLSRNRRKFVTVVGGLDTFPDVKIKDAAKKIGKQFACGSSVSKAPSGAEEVVIQGDVLMDLPGFLEATLNIPAAKISV 504
            +CGLPP+YCE+G   E CR W E + P  L   A+ E +A +E+                          KK + +K GG           +QRV + R SR  +K VT + GL+ FP +K+K+ AK +GK+FAC +SV   P+G +++ IQGDVL D+   L     I A KI++
Sbjct:  117 ICGLPPDYCEFGPDVEKCRPWLEQHAPWALLGDALVEDMADMEL------------------------GDKKKKKSKRGGQGRKKALVDESKQRVTVSRSSRGGKKVVTHLVGLEFFPGLKLKETAKTLGKRFACSTSVKDTPTGEKDIQIQGDVLYDIKDVLGQLCGISADKIAL 268
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1699.4976.1 vs. uniprot
Match: W7LE57_GIBM7 (Translation machinery-associated protein 22 n=20 Tax=Fusarium TaxID=5506 RepID=W7LE57_GIBM7)

HSP 1 Score: 102 bits (255), Expect = 2.800e-24
Identity = 69/179 (38.55%), Postives = 92/179 (51.40%), Query Frame = 1 
Query:    1 VCGLPPEYCEYGSTGEACRAWAEANCPEVL-------AIEEGIAGLEVQGGAGXXXXXXXXXXXXXXXXXXXXGKKVRIAKPGGXXXXXXEQR--VVIGRLSRNRRKFVTVVGGLDTFPDVKIKDAAKKIGKQFACGSSVSKAPSGAEEVVIQGDVLMDLPGFL-EATLNIPAAKISVL 507
            VC LPPEYCEYG T + C+ W E N PE+        A+E   A L V+                         KK   A+           R  V I R+ RN++KFVT V GL++F D+++K  AK +GK+FA GSSV+K P G EE+V+QGDV ++L  FL E    IP   I ++
Sbjct:   21 VCTLPPEYCEYGGTVKKCQEWLEKNEPELYNRIWSAEALEAATASLSVEA---------------QKRAAKDAQKKTAKAEAAEAKHADLLARSVVTIKRIERNKKKFVTAVIGLESF-DLELKKVAKDLGKKFATGSSVTKLPGGGEEIVVQGDVSVELEEFLLEKYKQIPEDHIELV 183
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1699.4976.1 vs. uniprot
Match: UPI001E8E510E (translation initiation factor SUI1 n=1 Tax=Emericellopsis atlantica TaxID=2614577 RepID=UPI001E8E510E)

HSP 1 Score: 102 bits (255), Expect = 3.090e-24
Identity = 68/181 (37.57%), Postives = 91/181 (50.28%), Query Frame = 1 
Query:    1 VCGLPPEYCEYGSTGEACRAWAEANCPEVLA-------IEEGIAGLEVQGGAGXXXXXXXXXXXXXXXXXXXXGKKVRIAKPGGXXXXXXEQ----RVVIGRLSRNRRKFVTVVGGLDTFPDVKIKDAAKKIGKQFACGSSVSKAPSGAEEVVIQGDVLMDLPGFL-EATLNIPAAKISVL 507
            VC LPPEYCEYG T + C+ W EAN PE+ A       +E   A L V                           + + AK         E+     + I R+ RN++KFVT V GL+ F  + +K  AK +GK+FA GSSV+K PSG EE+V+QGDV  +L  FL E   +IP   I ++
Sbjct:   21 VCTLPPEYCEYGGTVKKCQEWLEANQPEMYAKIWSPEVLEAATAALSVDA-----------------QKRAARDAQKKAAKAEAAEAKQNEKLASSTITIKRIERNKKKFVTAVFGLEAF-GLDLKKVAKDLGKKFATGSSVTKVPSGGEEIVVQGDVSEELEEFLLEKYKDIPGENIELV 183
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1699.4976.1 vs. uniprot
Match: D8RU76_SELML (Translation machinery-associated protein 22 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RU76_SELML)

HSP 1 Score: 102 bits (253), Expect = 4.010e-24
Identity = 63/173 (36.42%), Postives = 92/173 (53.18%), Query Frame = 1 
Query:    1 VCGLPPEYCEYGSTGEACRAWAEANCPEVLA------IEEGIAGLEVQGGAGXXXXXXXXXXXXXXXXXXXXGKKVRIAKPGGXXXXXXEQRVVIGRLSRNRRKFVTVVGGLDTFPDVKIKDAAKKIGKQFACGSSVSKAPSGAEEVVIQGDVLMDLPGFLEATL-NIPAAKI 498
            VC LPPEYCE+G   E C+ W   N P++         E+ + GL V    G                     K++    PGG      +  VV+ R++RN+RK VT + GLD F  VK+ +A+KK+GK+FA G+SV K P+  E++ +QGD+L+D+  F+  T  NIP + I
Sbjct:   12 VCSLPPEYCEFGPDFEKCKPWLLENVPDLYPELARERAEQQLQGLTVSNEKGDSSKTQEEDV-----------KRL----PGGKIKKKEKPAVVVERVTRNKRKCVTTIKGLDMF-GVKLGEASKKLGKKFASGASVVKGPTEKEQIDVQGDILLDIVDFITDTWQNIPESAI 168
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1699.4976.1 vs. uniprot
Match: A0A6S8TGH9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8TGH9_9STRA)

HSP 1 Score: 103 bits (258), Expect = 5.340e-24
Identity = 65/164 (39.63%), Postives = 86/164 (52.44%), Query Frame = 1 
Query:    7 GLPPEYCEYGSTGEACRAWAEANCPEVLAIEEGIAGLEVQGGAGXXXXXXXXXXXXXXXXXXXXGKKVRIAKPGGXXXXXXEQRVVIGRLSRNRRKFVTVVGGLDTFPDVKIKDAAKKIGKQFACGSSVSKAPSGAEEVVIQGDVLMDLPGFLEATLNIPAAKI 498
            GLPPEYCEY    +  R W   +CP +L  E+    +  +G  G                     KK  I+          +Q+V+I +  RN++K VT V GL+TF  VK+KDAAK  GK+FA  SSV +  SG +E+VIQGDV+ DLP  LE    IP +KI
Sbjct:  118 GLPPEYCEYYPDYDKTRPWIAEHCPHLLKGEDEAGDVGKKGKRGGGVI-----------------KKKTISAD--------KQKVIISKEVRNKKKAVTSVEGLETF-SVKLKDAAKVFGKKFAASSSVKEKDSGGQEIVIQGDVIWDLPALLEKEYKIPKSKI 255
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1699.4976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9G4_9PHAE8.510e-9195.93SUI1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835Z4W5_9STRA5.790e-3852.04Putative RNA binding protein Tma22 n=1 Tax=Tribone... [more]
A0A6V2SCS0_HETAK2.550e-3052.07Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6S8UAK3_9STRA6.990e-2539.63Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A388KVD0_CHABU8.160e-2538.69Translation machinery-associated protein 22 n=1 Ta... [more]
A0A7S2RD20_9STRA2.750e-2435.80Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
W7LE57_GIBM72.800e-2438.55Translation machinery-associated protein 22 n=20 T... [more]
UPI001E8E510E3.090e-2437.57translation initiation factor SUI1 n=1 Tax=Emerice... [more]
D8RU76_SELML4.010e-2436.42Translation machinery-associated protein 22 n=2 Ta... [more]
A0A6S8TGH9_9STRA5.340e-2439.63Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1699contigEcto-sp13_S_contig1699:12938..15926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score271.2
Seed ortholog evalue3.4e-70
Seed eggNOG ortholog2880.D8LII3
Preferred nameDENR
Model size519
KEGG koko:K19873
KEGG Pathwayko00515,ko01100,map00515,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0001731,GO:0002181,GO:0002183,GO:0002188,GO:0002190,GO:0002192,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006996,GO:0007154,GO:0007165,GO:0008135,GO:0008150,GO:0008152,GO:0008284,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009755,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0014070,GO:0016032,GO:0016043,GO:0019080,GO:0019081,GO:0019222,GO:0019538,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0023051,GO:0023052,GO:0023056,GO:0030518,GO:0030522,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032790,GO:0032870,GO:0032984,GO:0032988,GO:0032991,GO:0033993,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0035075,GO:0035076,GO:0036314,GO:0036315,GO:0042127,GO:0042221,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043401,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0044877,GO:0045727,GO:0045948,GO:0046626,GO:0046628,GO:0048518,GO:0048522,GO:0048545,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051704,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0070887,GO:0070992,GO:0071310,GO:0071383,GO:0071390,GO:0071396,GO:0071407,GO:0071495,GO:0071704,GO:0071826,GO:0071840,GO:0075522,GO:0080090,GO:0097159,GO:0097305,GO:0097306,GO:0110017,GO:1900076,GO:1900078,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901654,GO:1901655,GO:1901700,GO:1901701,GO:1903008,GO:1990904,GO:2000112
Exons5
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG0023@1,KOG3239@2759
Ec32 ortholog descriptionTranslation initiation factor SUI1
Ec32 orthologEc-18_003530.1
Cds size519
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462889.1209645-CDS-Ecto-sp13_S_contig1699:12937..129761681462889.1209645-CDS-Ecto-sp13_S_contig1699:12937..12976Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1699 12938..12976 -
1681462889.1430333-CDS-Ecto-sp13_S_contig1699:13469..136181681462889.1430333-CDS-Ecto-sp13_S_contig1699:13469..13618Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1699 13470..13618 -
1681462889.1541314-CDS-Ecto-sp13_S_contig1699:14623..147471681462889.1541314-CDS-Ecto-sp13_S_contig1699:14623..14747Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1699 14624..14747 -
1681462889.1635847-CDS-Ecto-sp13_S_contig1699:15118..152051681462889.1635847-CDS-Ecto-sp13_S_contig1699:15118..15205Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1699 15119..15205 -
1681462889.1746566-CDS-Ecto-sp13_S_contig1699:15806..159261681462889.1746566-CDS-Ecto-sp13_S_contig1699:15806..15926Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1699 15807..15926 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1699.4976.1prot_Ecto-sp13_S_contig1699.4976.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1699 12938..15926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1699.4976.1

>prot_Ecto-sp13_S_contig1699.4976.1 ID=prot_Ecto-sp13_S_contig1699.4976.1|Name=mRNA_Ecto-sp13_S_contig1699.4976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=173bp
VCGLPPEYCEYGSTGEACRAWAEANCPEVLAIEEGIAGLEVQGGAGGEAA
GGAERAAGGEEEPKKKGKKVRIAKPGGKKAAGGEQRVVIGRLSRNRRKFV
TVVGGLDTFPDVKIKDAAKKIGKQFACGSSVSKAPSGAEEVVIQGDVLMD
LPGFLEATLNIPAAKISVLSTS*
back to top

mRNA from alignment at Ecto-sp13_S_contig1699:12938..15926-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1699.4976.1 ID=mRNA_Ecto-sp13_S_contig1699.4976.1|Name=mRNA_Ecto-sp13_S_contig1699.4976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2989bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1699:12938..15926- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTGTGGGCTACCTCCCGAGTACTGCGAGTACGGCTCCACCGGGGAAGC
CTGCAGAGCATGGGCGGAGGCGAACTGTCCAGAGGTGTTGGCCATCGAAG
AGGGGATAGCAGGACTTGAGGTGTGGCATGTTTTTAATTTGGGGGATTTT
GTGTTGTTTCTTCTTGGACAGGCTGTCTTGTGCGTTTGTGTTGTCAGCGT
TCACGTCGGTAACGAGCCTTTCAAAACTGACTTTCAACCTTAACCTTCGA
AACCTACGCCGTAGTTGTGTGGTTGTGTTGTTTGTTGTTGCCCTCGATGT
GTGTGCGAAGGGGCTGGTGTCGTCGCTGTCCGTTTCCTTGTTGCTGCGTC
GAAGAAGGGCAAAAATGTTACCGCAGCCAGGGAACACCCGAAACACAAGG
CAGGGGACCACGGTTTCGCATTTCTGGATTTACAGCAGCAGCACTTGCAA
AGCTCGCTTGCTTATCGCCCCGGTTACGTTGCCTGGCAGGCAAAAAGAAA
CAAACACGGGCTCGTTATTGGGTTTGTCCGCGAAGAACCCCACGATACAA
CAGGGCACATATACCTCGAAACCTCTACCATGTTCCTCTGACATGCACAG
TCGTTCGTCTCTCGTTCTTGTTGCCCCTCCCATCTTGGTCGGCTTTGCTG
TTGTCGGTGTGGTGTCGCTGCCGTTGTTTTTGCCGTGTCGTTGTTGTTGC
ATTTGTTCGTTGCCCAACCAGGTTCAAGGAGGTGCAGGAGGGGAAGCGGC
GGGGGGGGCGGAGAGGGCTGCGGGGGGCGAGGAAGAGCCAAAGAAAAAGG
GCAAGAAGGTGAGAGTGTTTGGGCTTAGGGATTTTCTTCTTCCCCGAAAT
GTTGTATTTGCGCGTCTGTGTCACAGGACGAGGAAAACCCCTTGGTCGAG
TGTTCATCTCAAGCCTGAATCACGAGCCTACTACCCTACCTGCCTTCGCC
TCCTTTCTTTCGTATTCATACCGACACATCTCACTTAGACCCCTTGATAC
TCTCATGAAAGAACTTTCGTGTTTGGCTCACGCGTTCTTTCTCCTGGCCA
GCCTCGCCTCGCTCCTTCAGTGGCGTTGCTGAAGAGCTGGGATCTTACAA
ACGGCTTCCTCCCGCTGAGCCCTTACTCATCTACCCGCCCACCGTCCTTC
TGCGATGTCACCCCCCGATTGTGTCGTAGGTAAGGATAGCAAAACCTGGC
GGTAAGAAGGCGGCCGGAGGGGAGCAACGAGTCGTCATCGGGCGCCTATC
CCGAAACCGCCGCAAGTTTGTAACCGTCGTTGGCGGTCTCGACACCTTCC
CAGGTGGGTGGATCCTGGCTGCGTTTTGTTTTAAATTTACATCCGAAATC
TGTTGGAAAACCCAACGATCAAGTACTCGAGCTTCGTTTCTGTCACAGTG
GCGGGTCCTCTATAGCGCGGGTATGTACCACGCGCTTTCACCCGCACTAT
AGCGGGCACCCGCACTGTTCCAAAATACCTGCACTTTGTGCTGCCGCCAA
ACTGTTGCTCCGTACAATAGTGTACGCGTCGTGGATGGTGGAAATGAAGA
TCACCCGGCCGGGTTGTACGTAGCAGGTTGTGGGTTCGATTCCCTCGATG
GGGGGGTTATTTCCCTGTAGTTTGCAGTGGAACACGACTTAAATTCGTGG
GTTCGCACTTCGACTTCATGGCCGACAAGGGAAAGGGACGGCTAAACCCT
TCTCGCGACAAAATTAAGGCAAGCACCTCGGGAGGAAAGGTCACGGTGTG
ACCTTCCTCCTGTGCGACCCCGGCTGAAATGTCAGACATGTACACCGAGA
GGTGTACGCACTGTCGCAACGCTCTTAAGATTTTGTGCTCGTGGTTTTTT
CCACCACTGTACCAGACATTGTATTGTCTTTTTCCTGATGTTGCACCAGT
AAGTGCTTTATCGTTCGACCGTCCAGTTGCAGACGATGATGTGCGTACTT
TGCTACCGTAGTTGTGCTGTGGTCAATGGTTTTTCTGACCTACCTGCGCG
AAGTCCGGGGCCACATCAAGGATTTGCAGTCTTATTTATACGTGCAGTAC
ACGAATCCACGGGGATGGATATGGACATGTCCGATGCGCTCTCCCTTAAC
TCGAATGAAGAGTTCGATGCGTGCGAGTGTTGTCGATCAGATCTCCTTGT
GTGTGAAAAGCGCGGCGCACGATGCATGAGCAAACGCAAGAGCGAGATCT
TAGGTTGAAGCGTCAAATGCCATTGCGCCATTCATATTTGAAGCCACACA
GTCAGTCGCGTACATGTGGCCGCCGTGCACTGTTTGGTGCGGTTCGACAC
AACCCCAGACGTCAAGATCAAAGACGCGGCAAAAAAGATCGGCAAGCAGT
TCGCGTGTGGATCCTCCGTGAGCAAGGCACCCTCTGGGGCGGAGGAGGTG
GTGATCCAGGGGGACGTGCTAATGGACTTGCCTGGTTTCCTCGAGGCCAC
TCTCAACGTGCGAAGCTTTTGTTGTTTTGTTTGCGTATTTCTATTTTGTT
ATTGTCTGTCGCCAAGTACCGATGCCGTCCTTCTTCAGCTCCTATGCCGT
GGTCGCGCAGTACTTTGTAGGAGTTCAGAAACGAGCTTGCATGGAGTTTT
CGAGCCCCCGTTGGACGCGTATCCTGTTGTGTTGGTAAAAGTACAACGTT
GCTATCCGTTTCGGTGCAACATGTGCGAAAGTTCTCTGTCTAGTTGGTCA
GTGGATAGTTTTTGTTCTTGACCGGGTTTCTGCTGCTGTCTCGTGTTGTG
CCTGTCATCAAGTTGTCTTACTCACTGATACGGAAGGCAAGCCGAATGAA
CTCTACTGGACAGGTCTTGATTATCCTCGCGAGATTGAAGACGGTTAAAA
AAAGTCCTGCACAACTTTCGTAGCCTCCTGATCAGCTGATCCTCTTTTTT
CGCTCGCCATATTCCGTCATCGTTTCTCTCCTCCCTTTGTACCCTTTCAG
ATCCCAGCGGCCAAGATCAGCGTCCTCTCGACATCATAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1699:12938..15926-

>mRNA_Ecto-sp13_S_contig1699.4976.1 ID=mRNA_Ecto-sp13_S_contig1699.4976.1|Name=mRNA_Ecto-sp13_S_contig1699.4976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1699:12938..15926- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTGTGGGCTACCTCCCGAGTACTGCGAGTACGGCTCCACCGGGGAAGC
CTGCAGAGCATGGGCGGAGGCGAACTGTCCAGAGGTGTTGGCCATCGAAG
AGGGGATAGCAGGACTTGAGGTTCAAGGAGGTGCAGGAGGGGAAGCGGCG
GGGGGGGCGGAGAGGGCTGCGGGGGGCGAGGAAGAGCCAAAGAAAAAGGG
CAAGAAGGTAAGGATAGCAAAACCTGGCGGTAAGAAGGCGGCCGGAGGGG
AGCAACGAGTCGTCATCGGGCGCCTATCCCGAAACCGCCGCAAGTTTGTA
ACCGTCGTTGGCGGTCTCGACACCTTCCCAGACGTCAAGATCAAAGACGC
GGCAAAAAAGATCGGCAAGCAGTTCGCGTGTGGATCCTCCGTGAGCAAGG
CACCCTCTGGGGCGGAGGAGGTGGTGATCCAGGGGGACGTGCTAATGGAC
TTGCCTGGTTTCCTCGAGGCCACTCTCAACATCCCAGCGGCCAAGATCAG
CGTCCTCTCGACATCATAG
back to top