prot_Ecto-sp13_S_contig1699.4975.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1699.4975.1
Unique Nameprot_Ecto-sp13_S_contig1699.4975.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length715
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1699.4975.1 vs. uniprot
Match: A0A6H5K762_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K762_9PHAE)

HSP 1 Score: 313 bits (801), Expect = 2.260e-92
Identity = 159/177 (89.83%), Postives = 165/177 (93.22%), Query Frame = 0 
Query:    1 FRVSDRQSSHDMMPLRETCVTSRRAYRASRIYRRTRTNGRAVRRSLKTGMPFELHALPSGSDGANNIARAEGGNSKRPSLPNSRSGPSRPSRRRQGAVEGGAISLTEMKKMLYDSRSGDWRKALRAVDGMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDLSA 177
            F VS+RQSSHD+MP R+TCVTSRRA+RASR+YRRTR NGRAVRR LKTGMPFEL ALP GSD ANNIARA+GGNSKRP L NSRSGPSRPSRRRQGAVE G  SLTEMKKMLYDSRSGDWRKALRAVDGMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDLSA
Sbjct:   30 FHVSNRQSSHDVMPPRDTCVTSRRAHRASRVYRRTRANGRAVRRWLKTGMPFELRALPPGSDAANNIARADGGNSKRPPLSNSRSGPSRPSRRRQGAVEAGTKSLTEMKKMLYDSRSGDWRKALRAVDGMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDLSA 206
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BLAST of mRNA_Ecto-sp13_S_contig1699.4975.1 vs. uniprot
Match: A0A6H5KWX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWX4_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 2.670e-47
Identity = 106/164 (64.63%), Postives = 121/164 (73.78%), Query Frame = 0 
Query:   13 MPLRETCVTSRRAYRASRIYRRTRTNGRAVRRSLKTGMPFELHALPSGSDGANNI-ARAEGGNSKRPSLPNSRSGPSRPSRRRQGAVEGGAISLTEMKKMLYDSRSGDWRKALRAVDGMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDL 175
            +PLRE C T R   RASR+YRRTRTN  A RR  + G  FEL ALP GSD ANNI +R EGG      LP+SR  PSRP  +RQG VEG   S T++  ML DS SGDWRKALRA+DGM++LPG L+DQ+S+CMAITACGRG QWEQAVRLLREMPT G  P+L
Sbjct:    4 LPLREACGTPRGTSRASRLYRRTRTNECAARRWREAGTLFELRALPRGSDAANNITSRVEGGARNGLYLPDSRPRPSRPVGKRQGVVEGRTKSRTKLTTMLRDSGSGDWRKALRALDGMRQLPGGLLDQESFCMAITACGRGKQWEQAVRLLREMPTAGLTPNL 167
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BLAST of mRNA_Ecto-sp13_S_contig1699.4975.1 vs. uniprot
Match: D8LIJ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ9_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 9.720e-19
Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = 0 
Query:  111 MLYDSRSGDWRKALRAVDGMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDL 175
            M  DSR GD RKALRA+DGMK+LP  L+ QKS+CM ITACGRGGQWEQAV+LLREMPT G +P++
Sbjct:    1 MPRDSRGGDRRKALRALDGMKRLPRELLHQKSHCMVITACGRGGQWEQAVKLLREMPTAGLSPNV 65
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BLAST of mRNA_Ecto-sp13_S_contig1699.4975.1 vs. uniprot
Match: D8LG06_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG06_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 5.960e-6
Identity = 34/83 (40.96%), Postives = 53/83 (63.86%), Query Frame = 0 
Query:   95 QGAVEGGAISLTEMKKMLYDSRS-GDWRKALRAVDGMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPT-EGAAPDL 175
            QGA    + +  +++  L ++ + G WR+AL  +D MK+  G ++   SY  AIT CGR GQWE+A+ LLRE+P  EG +P++
Sbjct:  100 QGAARANSRAARKLQAALREAATTGKWREALGILDEMKE--GGVVCAHSYTTAITTCGRQGQWEKALELLREIPEQEGVSPNV 180
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BLAST of mRNA_Ecto-sp13_S_contig1699.4975.1 vs. uniprot
Match: A0A6H5JAI1_9PHAE (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAI1_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.030e-5
Identity = 52/145 (35.86%), Postives = 69/145 (47.59%), Query Frame = 0 
Query:   13 MPLRETCVTSRRAYRASRIYRRTRTNGRAVRRSLKTGMPFELHALPSGSDGANNIARAEGGNSKRPSLPNSRSGPSRPSRRRQGAVEGG--AISLTEMKKMLYDSRSGDWRKALRAVDGMKKLPGWLIDQKSYCMAITACGRGGQ 155
            MP   TC  S    + SR YR +R    + R    T MP EL A      GA + A   G  ++   L     GP   S R +GA   G  + SL ++K  L +++ GDWR AL A+D  K + G  +D  SY +AI AC  G Q
Sbjct:   52 MPTHSTCSDSELMAKNSRTYRHSRRERGSTRHLSGTRMPCELDA------GAVD-AGVSGEATRLGVLSRKGEGPLESSTRSRGAARRGGKSKSLVKLKSTLLEAKDGDWRTALAALDEFK-ISGGNLDTTSYNIAIAACSNGKQ 188
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1699.4975.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K762_9PHAE2.260e-9289.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KWX4_9PHAE2.670e-4764.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIJ9_ECTSI9.720e-1972.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LG06_ECTSI5.960e-640.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JAI1_9PHAE1.030e-535.86PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 281..315
e-value: 7.5E-9
score: 33.2
coord: 561..595
e-value: 7.7E-8
score: 30.1
coord: 351..384
e-value: 1.2E-6
score: 26.3
coord: 456..481
e-value: 2.3E-4
score: 19.1
coord: 596..629
e-value: 2.3E-6
score: 25.4
coord: 247..280
e-value: 2.6E-6
score: 25.3
coord: 212..245
e-value: 2.6E-6
score: 25.2
coord: 177..210
e-value: 2.9E-5
score: 21.9
coord: 631..665
e-value: 3.4E-8
score: 31.2
coord: 386..420
e-value: 4.0E-7
score: 27.8
coord: 421..455
e-value: 2.3E-7
score: 28.6
coord: 316..350
e-value: 9.2E-4
score: 17.2
coord: 666..700
e-value: 5.1E-8
score: 30.6
coord: 142..174
e-value: 1.4E-5
score: 23.0
coord: 526..560
e-value: 2.1E-5
score: 22.4
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 173..222
e-value: 2.1E-8
score: 34.2
coord: 418..467
e-value: 4.7E-11
score: 42.7
coord: 628..676
e-value: 1.6E-10
score: 41.0
coord: 558..607
e-value: 1.2E-10
score: 41.4
coord: 278..326
e-value: 2.0E-10
score: 40.7
coord: 348..397
e-value: 6.8E-13
score: 48.6
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 240..271
e-value: 1.8E-5
score: 24.3
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 493..517
e-value: 0.0021
score: 18.2
coord: 142..170
e-value: 0.0031
score: 17.6
coord: 526..553
e-value: 8.2E-4
score: 19.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 664..698
score: 12.321
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 209..243
score: 11.488
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 384..418
score: 12.299
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 139..173
score: 11.06
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 349..383
score: 11.882
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 629..663
score: 12.211
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 559..593
score: 11.86
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 454..488
score: 9.909
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 419..453
score: 12.255
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 279..313
score: 13.329
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 244..278
score: 11.553
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 524..558
score: 10.501
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 174..208
score: 11.213
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 594..628
score: 11.586
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 314..348
score: 10.775
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 489..523
score: 8.692
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 219..326
e-value: 2.5E-36
score: 126.7
coord: 489..604
e-value: 2.3E-33
score: 117.1
coord: 605..714
e-value: 1.7E-36
score: 127.3
coord: 104..218
e-value: 7.1E-28
score: 99.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 327..488
e-value: 2.5E-52
score: 180.1
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 555..707
coord: 276..411
coord: 407..570
coord: 112..308

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1699contigEcto-sp13_S_contig1699:9010..11154 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1699.4975.1mRNA_Ecto-sp13_S_contig1699.4975.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1699 9010..11154 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1699.4975.1 ID=prot_Ecto-sp13_S_contig1699.4975.1|Name=mRNA_Ecto-sp13_S_contig1699.4975.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=715bp
FRVSDRQSSHDMMPLRETCVTSRRAYRASRIYRRTRTNGRAVRRSLKTGM
PFELHALPSGSDGANNIARAEGGNSKRPSLPNSRSGPSRPSRRRQGAVEG
GAISLTEMKKMLYDSRSGDWRKALRAVDGMKKLPGWLIDQKSYCMAITAC
GRGGQWEQAVRLLREMPTEGAAPDLSAYSAVIDACAKGGQWKMAVFFLME
MPTKGIAPDARSYGAAINACARGGRWKIALDLLREMLARDVTPNVIIYNS
AINSCAKAGQWEIAVSLVKEMATVGLAPDVISYSSAISACGRGGRWEEAL
ELLEDMRTTGVAPDVITYGSAIAACANGGRWKEAVSLLRKIPTVGLTPNV
ISYSSVITACAKEGQWKIALDLLREMKAMRLTPNIITYNAAIDACAKGGR
WKEAIDLLREIPTVGLPPDVVSYSSVIDACSKGDRWKEAIDILREMPTVG
LSPNAISYNSAIDACAKGGRWKEAKGLLREIPTASVTQRVIGYNSAIAAC
AKGEQWKEALALLREMPIVGLHTTVFSYSAAIDACGKGNLWNKAKELLRE
MATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTVGLSPDVFSYSS
AIAACAKGDQWKEALAVLKEMSAAGLAPDLICYNSAIDACSKAGRWKMAV
ALLGEMRAAGLTPNIISYSSAIDACVRGGRWKEGVALLEEMRGSGVVPDV
STYHALIVTCAKYD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf