mRNA_Ecto-sp13_S_contig1699.4975.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1699.4975.1
Unique NamemRNA_Ecto-sp13_S_contig1699.4975.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1699.4975.1 vs. uniprot
Match: A0A6H5K762_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K762_9PHAE)

HSP 1 Score: 313 bits (801), Expect = 2.260e-92
Identity = 159/177 (89.83%), Postives = 165/177 (93.22%), Query Frame = 1 
Query:    1 FRVSDRQSSHDMMPLRETCVTSRRAYRASRIYRRTRTNGRAVRRSLKTGMPFELHALPSGSDGANNIARAEGGNSKRPSLPNSRSGPSRPSRRRQGAVEGGAISLTEMKKMLYDSRSGDWRKALRAVDGMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDLSA 531
            F VS+RQSSHD+MP R+TCVTSRRA+RASR+YRRTR NGRAVRR LKTGMPFEL ALP GSD ANNIARA+GGNSKRP L NSRSGPSRPSRRRQGAVE G  SLTEMKKMLYDSRSGDWRKALRAVDGMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDLSA
Sbjct:   30 FHVSNRQSSHDVMPPRDTCVTSRRAHRASRVYRRTRANGRAVRRWLKTGMPFELRALPPGSDAANNIARADGGNSKRPPLSNSRSGPSRPSRRRQGAVEAGTKSLTEMKKMLYDSRSGDWRKALRAVDGMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDLSA 206
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BLAST of mRNA_Ecto-sp13_S_contig1699.4975.1 vs. uniprot
Match: A0A6H5KWX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWX4_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 2.670e-47
Identity = 106/164 (64.63%), Postives = 121/164 (73.78%), Query Frame = 1 
Query:   37 MPLRETCVTSRRAYRASRIYRRTRTNGRAVRRSLKTGMPFELHALPSGSDGANNI-ARAEGGNSKRPSLPNSRSGPSRPSRRRQGAVEGGAISLTEMKKMLYDSRSGDWRKALRAVDGMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDL 525
            +PLRE C T R   RASR+YRRTRTN  A RR  + G  FEL ALP GSD ANNI +R EGG      LP+SR  PSRP  +RQG VEG   S T++  ML DS SGDWRKALRA+DGM++LPG L+DQ+S+CMAITACGRG QWEQAVRLLREMPT G  P+L
Sbjct:    4 LPLREACGTPRGTSRASRLYRRTRTNECAARRWREAGTLFELRALPRGSDAANNITSRVEGGARNGLYLPDSRPRPSRPVGKRQGVVEGRTKSRTKLTTMLRDSGSGDWRKALRALDGMRQLPGGLLDQESFCMAITACGRGKQWEQAVRLLREMPTAGLTPNL 167
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BLAST of mRNA_Ecto-sp13_S_contig1699.4975.1 vs. uniprot
Match: D8LIJ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ9_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 9.720e-19
Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:  331 MLYDSRSGDWRKALRAVDGMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDL 525
            M  DSR GD RKALRA+DGMK+LP  L+ QKS+CM ITACGRGGQWEQAV+LLREMPT G +P++
Sbjct:    1 MPRDSRGGDRRKALRALDGMKRLPRELLHQKSHCMVITACGRGGQWEQAVKLLREMPTAGLSPNV 65
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BLAST of mRNA_Ecto-sp13_S_contig1699.4975.1 vs. uniprot
Match: D8LG06_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG06_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 5.960e-6
Identity = 34/83 (40.96%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:  283 QGAVEGGAISLTEMKKMLYDSRS-GDWRKALRAVDGMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPT-EGAAPDL 525
            QGA    + +  +++  L ++ + G WR+AL  +D MK+  G ++   SY  AIT CGR GQWE+A+ LLRE+P  EG +P++
Sbjct:  100 QGAARANSRAARKLQAALREAATTGKWREALGILDEMKE--GGVVCAHSYTTAITTCGRQGQWEKALELLREIPEQEGVSPNV 180
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1699.4975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K762_9PHAE2.260e-9289.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KWX4_9PHAE2.670e-4764.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIJ9_ECTSI9.720e-1972.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LG06_ECTSI5.960e-640.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1699contigEcto-sp13_S_contig1699:9010..11154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score149.4
Seed ortholog evalue6.2e-33
Seed eggNOG ortholog2880.D8LII2
Model size2145
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-18_003540.1
Cds size2145
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462888.998077-CDS-Ecto-sp13_S_contig1699:9009..111541681462888.998077-CDS-Ecto-sp13_S_contig1699:9009..11154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1699 9010..11154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1699.4975.1prot_Ecto-sp13_S_contig1699.4975.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1699 9010..11154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1699.4975.1

>prot_Ecto-sp13_S_contig1699.4975.1 ID=prot_Ecto-sp13_S_contig1699.4975.1|Name=mRNA_Ecto-sp13_S_contig1699.4975.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=715bp
FRVSDRQSSHDMMPLRETCVTSRRAYRASRIYRRTRTNGRAVRRSLKTGM
PFELHALPSGSDGANNIARAEGGNSKRPSLPNSRSGPSRPSRRRQGAVEG
GAISLTEMKKMLYDSRSGDWRKALRAVDGMKKLPGWLIDQKSYCMAITAC
GRGGQWEQAVRLLREMPTEGAAPDLSAYSAVIDACAKGGQWKMAVFFLME
MPTKGIAPDARSYGAAINACARGGRWKIALDLLREMLARDVTPNVIIYNS
AINSCAKAGQWEIAVSLVKEMATVGLAPDVISYSSAISACGRGGRWEEAL
ELLEDMRTTGVAPDVITYGSAIAACANGGRWKEAVSLLRKIPTVGLTPNV
ISYSSVITACAKEGQWKIALDLLREMKAMRLTPNIITYNAAIDACAKGGR
WKEAIDLLREIPTVGLPPDVVSYSSVIDACSKGDRWKEAIDILREMPTVG
LSPNAISYNSAIDACAKGGRWKEAKGLLREIPTASVTQRVIGYNSAIAAC
AKGEQWKEALALLREMPIVGLHTTVFSYSAAIDACGKGNLWNKAKELLRE
MATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTVGLSPDVFSYSS
AIAACAKGDQWKEALAVLKEMSAAGLAPDLICYNSAIDACSKAGRWKMAV
ALLGEMRAAGLTPNIISYSSAIDACVRGGRWKEGVALLEEMRGSGVVPDV
STYHALIVTCAKYD*
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mRNA from alignment at Ecto-sp13_S_contig1699:9010..11154+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1699.4975.1 ID=mRNA_Ecto-sp13_S_contig1699.4975.1|Name=mRNA_Ecto-sp13_S_contig1699.4975.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2145bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1699:9010..11154+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTCGTGTGTCGGATCGGCAGAGTTCTCATGATATGATGCCCCTGCGTGA
GACCTGTGTTACCTCGAGAAGGGCCTACCGGGCCTCCCGCATTTATCGAC
GTACGCGGACAAATGGACGCGCCGTCCGAAGATCGCTGAAAACAGGAATG
CCGTTCGAGCTCCACGCTCTACCTTCCGGTTCGGACGGCGCAAATAACAT
CGCTAGGGCTGAGGGCGGAAATAGCAAACGACCATCCCTGCCCAATTCCA
GATCCGGGCCAAGTCGACCTTCAAGGAGAAGGCAGGGTGCGGTGGAGGGG
GGTGCCATATCTCTCACGGAGATGAAAAAAATGCTTTACGATTCGAGGAG
CGGGGACTGGAGAAAAGCGCTCAGAGCTGTAGATGGGATGAAAAAGTTAC
CTGGCTGGCTCATCGATCAGAAATCATACTGCATGGCCATCACTGCGTGT
GGGAGGGGGGGGCAGTGGGAACAGGCTGTGAGGCTACTGAGAGAGATGCC
GACTGAAGGGGCTGCCCCTGATTTGAGCGCATACAGCGCAGTCATTGATG
CGTGTGCGAAGGGAGGCCAGTGGAAGATGGCTGTGTTCTTTCTGATGGAG
ATGCCGACGAAAGGCATAGCTCCTGACGCCCGCAGCTACGGTGCGGCCAT
CAACGCCTGTGCAAGGGGCGGTCGGTGGAAGATTGCGTTAGATCTTCTGA
GGGAGATGCTCGCACGGGATGTTACTCCCAACGTCATCATCTACAACTCA
GCAATTAACTCGTGTGCCAAGGCGGGTCAGTGGGAGATTGCTGTGAGTTT
GGTGAAGGAAATGGCAACAGTGGGGCTGGCCCCCGATGTCATCAGCTACA
GCTCAGCGATCTCGGCATGTGGAAGGGGCGGGCGGTGGGAGGAAGCTTTG
GAGTTACTCGAGGATATGCGCACGACGGGAGTAGCTCCCGATGTCATCAC
GTACGGTTCCGCCATCGCTGCGTGCGCCAACGGGGGTCGTTGGAAGGAGG
CTGTGAGCTTGCTGAGGAAGATTCCGACAGTAGGACTTACCCCCAATGTT
ATCAGCTACAGCTCAGTAATCACCGCTTGCGCTAAGGAGGGTCAATGGAA
GATTGCTTTGGATCTTCTGAGAGAGATGAAAGCAATGAGGTTAACTCCCA
ATATTATCACCTACAATGCAGCCATCGATGCTTGCGCAAAGGGCGGTCGG
TGGAAGGAGGCCATTGATCTCCTGAGAGAGATACCAACGGTAGGGCTACC
CCCCGATGTCGTGAGCTACAGCTCAGTCATTGATGCTTGTTCAAAAGGGG
ATCGATGGAAGGAAGCTATCGACATTCTGAGAGAGATGCCGACGGTCGGG
CTATCCCCCAACGCCATCAGCTATAATTCTGCCATCGATGCATGTGCAAA
GGGAGGACGGTGGAAGGAGGCCAAGGGTCTGCTGAGGGAGATACCAACGG
CGAGTGTGACGCAGAGAGTCATTGGCTACAACTCAGCTATTGCCGCGTGT
GCAAAGGGGGAGCAGTGGAAGGAGGCTTTGGCTCTGCTGAGAGAGATGCC
GATTGTGGGGCTACACACCACCGTGTTCAGCTACAGCGCTGCCATTGATG
CGTGTGGAAAAGGGAATCTGTGGAATAAGGCCAAAGAATTACTCAGAGAG
ATGGCAACGGTAGGACTTGCTCCGAATGAAGTGTGCTACAATTCCGCCAT
CGATGCGTGTGGACGAGGGGATCAGTGGGAAGAGGCCGTAGACCTATTGA
GAGAGATGCCGACGGTAGGACTTTCCCCCGATGTTTTCAGCTACAGCTCA
GCCATCGCTGCGTGCGCGAAGGGCGATCAATGGAAGGAGGCCCTGGCGGT
ACTGAAGGAGATGAGCGCGGCAGGGCTTGCCCCCGATCTCATTTGCTACA
ACTCGGCCATCGACGCGTGTTCCAAAGCAGGTCGGTGGAAGATGGCTGTG
GCGCTACTGGGCGAGATGCGGGCGGCAGGTCTGACTCCCAACATCATTAG
TTACAGCTCGGCCATCGACGCGTGTGTACGGGGGGGTCGGTGGAAGGAAG
GCGTAGCTCTACTGGAGGAAATGCGCGGGTCGGGAGTTGTCCCCGACGTC
AGCACCTATCACGCCTTAATTGTCACGTGCGCCAAGTACGACTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1699:9010..11154+

>mRNA_Ecto-sp13_S_contig1699.4975.1 ID=mRNA_Ecto-sp13_S_contig1699.4975.1|Name=mRNA_Ecto-sp13_S_contig1699.4975.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2145bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1699:9010..11154+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTCGTGTGTCGGATCGGCAGAGTTCTCATGATATGATGCCCCTGCGTGA
GACCTGTGTTACCTCGAGAAGGGCCTACCGGGCCTCCCGCATTTATCGAC
GTACGCGGACAAATGGACGCGCCGTCCGAAGATCGCTGAAAACAGGAATG
CCGTTCGAGCTCCACGCTCTACCTTCCGGTTCGGACGGCGCAAATAACAT
CGCTAGGGCTGAGGGCGGAAATAGCAAACGACCATCCCTGCCCAATTCCA
GATCCGGGCCAAGTCGACCTTCAAGGAGAAGGCAGGGTGCGGTGGAGGGG
GGTGCCATATCTCTCACGGAGATGAAAAAAATGCTTTACGATTCGAGGAG
CGGGGACTGGAGAAAAGCGCTCAGAGCTGTAGATGGGATGAAAAAGTTAC
CTGGCTGGCTCATCGATCAGAAATCATACTGCATGGCCATCACTGCGTGT
GGGAGGGGGGGGCAGTGGGAACAGGCTGTGAGGCTACTGAGAGAGATGCC
GACTGAAGGGGCTGCCCCTGATTTGAGCGCATACAGCGCAGTCATTGATG
CGTGTGCGAAGGGAGGCCAGTGGAAGATGGCTGTGTTCTTTCTGATGGAG
ATGCCGACGAAAGGCATAGCTCCTGACGCCCGCAGCTACGGTGCGGCCAT
CAACGCCTGTGCAAGGGGCGGTCGGTGGAAGATTGCGTTAGATCTTCTGA
GGGAGATGCTCGCACGGGATGTTACTCCCAACGTCATCATCTACAACTCA
GCAATTAACTCGTGTGCCAAGGCGGGTCAGTGGGAGATTGCTGTGAGTTT
GGTGAAGGAAATGGCAACAGTGGGGCTGGCCCCCGATGTCATCAGCTACA
GCTCAGCGATCTCGGCATGTGGAAGGGGCGGGCGGTGGGAGGAAGCTTTG
GAGTTACTCGAGGATATGCGCACGACGGGAGTAGCTCCCGATGTCATCAC
GTACGGTTCCGCCATCGCTGCGTGCGCCAACGGGGGTCGTTGGAAGGAGG
CTGTGAGCTTGCTGAGGAAGATTCCGACAGTAGGACTTACCCCCAATGTT
ATCAGCTACAGCTCAGTAATCACCGCTTGCGCTAAGGAGGGTCAATGGAA
GATTGCTTTGGATCTTCTGAGAGAGATGAAAGCAATGAGGTTAACTCCCA
ATATTATCACCTACAATGCAGCCATCGATGCTTGCGCAAAGGGCGGTCGG
TGGAAGGAGGCCATTGATCTCCTGAGAGAGATACCAACGGTAGGGCTACC
CCCCGATGTCGTGAGCTACAGCTCAGTCATTGATGCTTGTTCAAAAGGGG
ATCGATGGAAGGAAGCTATCGACATTCTGAGAGAGATGCCGACGGTCGGG
CTATCCCCCAACGCCATCAGCTATAATTCTGCCATCGATGCATGTGCAAA
GGGAGGACGGTGGAAGGAGGCCAAGGGTCTGCTGAGGGAGATACCAACGG
CGAGTGTGACGCAGAGAGTCATTGGCTACAACTCAGCTATTGCCGCGTGT
GCAAAGGGGGAGCAGTGGAAGGAGGCTTTGGCTCTGCTGAGAGAGATGCC
GATTGTGGGGCTACACACCACCGTGTTCAGCTACAGCGCTGCCATTGATG
CGTGTGGAAAAGGGAATCTGTGGAATAAGGCCAAAGAATTACTCAGAGAG
ATGGCAACGGTAGGACTTGCTCCGAATGAAGTGTGCTACAATTCCGCCAT
CGATGCGTGTGGACGAGGGGATCAGTGGGAAGAGGCCGTAGACCTATTGA
GAGAGATGCCGACGGTAGGACTTTCCCCCGATGTTTTCAGCTACAGCTCA
GCCATCGCTGCGTGCGCGAAGGGCGATCAATGGAAGGAGGCCCTGGCGGT
ACTGAAGGAGATGAGCGCGGCAGGGCTTGCCCCCGATCTCATTTGCTACA
ACTCGGCCATCGACGCGTGTTCCAAAGCAGGTCGGTGGAAGATGGCTGTG
GCGCTACTGGGCGAGATGCGGGCGGCAGGTCTGACTCCCAACATCATTAG
TTACAGCTCGGCCATCGACGCGTGTGTACGGGGGGGTCGGTGGAAGGAAG
GCGTAGCTCTACTGGAGGAAATGCGCGGGTCGGGAGTTGTCCCCGACGTC
AGCACCTATCACGCCTTAATTGTCACGTGCGCCAAGTACGACTAG
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