mRNA_Ecto-sp13_S_contig16982.4970.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16982.4970.1 vs. uniprot
Match: A0A6H5JFG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG5_9PHAE) HSP 1 Score: 756 bits (1952), Expect = 4.420e-266 Identity = 425/519 (81.89%), Postives = 448/519 (86.32%), Query Frame = 1
Query: 1 VDVGSLSNACSSLWQLLKFFDKAGRGDDKVALEEMISGFRKIRRKWATVKTERAGRVVLAKVVRLMRRAGMSLEEWFKFMDISQNGHGDGKLTALELRVGFERLATHIARRECCCRAFKCNRIPNYGLPPLTGPQIDTAGDGLETANGTSINCCSSSSGVAKDLFNVERTERQEHSSSHAQDHGHPAPAXXXRPRRHEGFDGTGPTQHNHSSSHSQACTTINGDTISSIAPGGDPDPIQEPDPRRAGGGGERGQQEEIEPLGGSAEGDACGGSLGSAVPMGHPQPEQTHGASLYGDSGSIDARRLSRGMNVPSGSSCGGGVDXXXXXXXXXXXXXXXXXXXXXRSNTMVTWSEEGPRIEIDRCESDLVPTGARERRSAGQEQSCGADNQAGQIENNKEEGAKSRTRTSSIDILNAGRAVACREHALDGMVYLGQRAYFLGLESETFTSKDVSDLMRFIDTDVDFSLDIREMRLAISRLHADEDENDAATSEAGNLLQVLESYMHRTGARFTDVFFFLDR 1557
VD +L A + +LLKFFD AGRGDDKV LEEMISGFRKIRRKWATVK ERAGRVVLAKVVRLMRRAGMSLEEWFKFMDISQNGHGDGKLTALELRVGFERLATHIARRECCCRAFKCNRIPNYGLPPLTGPQID AGDG ETANGTSINC SSSSGVAKDL VERT +QE+SSSHAQDHGH AP+ + HEGF+ T PTQHNHSSSH Q CTTIN DT SSI P G PDP +EP+P+RAGG GERGQQEE +PLGGSA+G A GGSLGSA PMGH + + GASLYGDSGS+DARRLS+GMNV G+ CGGGV XXXXXXXXXXXXXXXXXX T+ SEE P EID CESDLVP GA+E SAGQEQ CGA NQAG IEN KEEG KSRTRTSSID+LNAGRAVACREHALDGMVYLGQRAYFLGLE+ETFTSKDVSDLMRFIDTDVDFSLDIREMRLAISRLHADEDE+DA TSEAGNLLQVLESYMHRTGARFTDVFF LDR
Sbjct: 64 VDPSALLFADEDIDKLLKFFDNAGRGDDKVTLEEMISGFRKIRRKWATVKAERAGRVVLAKVVRLMRRAGMSLEEWFKFMDISQNGHGDGKLTALELRVGFERLATHIARRECCCRAFKCNRIPNYGLPPLTGPQIDPAGDGFETANGTSINCRSSSSGVAKDLSIVERTGKQENSSSHAQDHGHQAPSDRGKHHHHEGFEETDPTQHNHSSSHHQGCTTINRDTSSSITPDGIPDPTEEPEPKRAGGEGERGQQEESKPLGGSAQGAASGGSLGSAFPMGHHRSQGARGASLYGDSGSVDARRLSQGMNVLPGNRCGGGVXXXXXXXXXXXXXXXXXXX------TIARRSEEEPGHEIDHCESDLVPMGAKEGPSAGQEQWCGAGNQAGPIENYKEEGVKSRTRTSSIDMLNAGRAVACREHALDGMVYLGQRAYFLGLENETFTSKDVSDLMRFIDTDVDFSLDIREMRLAISRLHADEDEDDARTSEAGNLLQVLESYMHRTGARFTDVFFCLDR 576
BLAST of mRNA_Ecto-sp13_S_contig16982.4970.1 vs. uniprot
Match: D8LCN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN4_ECTSI) HSP 1 Score: 484 bits (1247), Expect = 3.340e-162 Identity = 311/519 (59.92%), Postives = 326/519 (62.81%), Query Frame = 1
Query: 1 VDVGSLSNACSSLWQLLKFFDKAGRGDDKVALEEMISGFRKIRRKWATVKTERAGRVVLAKVVRLMRRAGMSLEEWFKFMDISQNGHGDGKLTALELRVGFERLATHIARRECCCRAFKCNRIPNYGLPPLTGPQIDTAGDGLETANGTSINCCSSSSGVAKDLFNVERTERQEHSSSHAQDHGHPAPAXXXRPRRHEGFDGTGPTQHNHSSSHSQACTTINGDTISSIAPGGDPDPIQEPDPRRAGGGGERGQQEEIEPLGGSAEGDACGGSLGSAVPMGHPQPEQTHGASLYGDSGSIDARRLSRGMNVPSGSSCGGGVDXXXXXXXXXXXXXXXXXXXXXRSNTMVTWSEEGPRIEIDRCESDLVPTGARERRSAGQEQSCGADNQAGQIENNKEEGAKSRTRTSSIDILNAGRAVACREHALDGMVYLGQRAYFLGLESETFTSKDVSDLMRFIDTDVDFSLDIREMRLAISRLHADEDENDAATSEAGNLLQVLESYMHRTGARFTDVFFFLDR 1557
VD +L A + +LLKFFDKAGRGDDKV LEEMISGFRKIRRKWATVK ERAGRVVLAKVVRLMRRAGMSLEEWFKFMD SQ EPDPR AGGGGERGQQ E +PLGGSA+GD GGSLGSAVPMGH QPE THGASLYGD+GS+DARRLSR MNV SGS CGGG+D XXXXXXXXXXXXXXX SNT+VT S+E P EIDRCESDLVPTGA+ER SAGQEQ CG DNQAG IENNKEEGA+SRTR SSID+LNAGRA+ACREHALDGMVYLGQRAYFLGLESETFTSKDVSDLMRFIDTDVDFSLDIREMRLAISRLHADEDE+DA TSEAGNLLQVLESYMHRTGARFTDVFFFLDR
Sbjct: 64 VDPSALLFADEDIDKLLKFFDKAGRGDDKVTLEEMISGFRKIRRKWATVKAERAGRVVLAKVVRLMRRAGMSLEEWFKFMDTSQ-----------------------------------------------------------------------------------------------------------------------------------------------------------EPDPRHAGGGGERGQQGESKPLGGSAQGDVSGGSLGSAVPMGHHQPEGTHGASLYGDNGSVDARRLSRVMNVLSGSPCGGGIDGXXXXXXXXXXXXXXX------SNTIVTRSDEEPGYEIDRCESDLVPTGAKERPSAGQEQWCGTDNQAGHIENNKEEGAESRTRASSIDVLNAGRAIACREHALDGMVYLGQRAYFLGLESETFTSKDVSDLMRFIDTDVDFSLDIREMRLAISRLHADEDEDDARTSEAGNLLQVLESYMHRTGARFTDVFFFLDR 421
BLAST of mRNA_Ecto-sp13_S_contig16982.4970.1 vs. uniprot
Match: A0A7S2B085_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B085_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 6.360e-7 Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 1
Query: 43 QLLKFFDKAGRGDD-----KVALEEMISGFRKIRRKWATVKTERAGRVVLAKVVRLMRRAGMSLEEWFKFMDISQNGHGDGKLTALELRVGF 303
++L + D G DD K++L E+ FR+ +R A + E GR + K+ LM + +++EEWFK MD SQ G GDG ++ LELR G
Sbjct: 41 KVLNYIDSMGEPDDGPSDGKISLRELDQAFRRAKRARAGKEYEVLGRECVYKLEALMEQCDVTVEEWFKEMDNSQGGKGDGTVSTLELRRGL 132 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16982.4970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16982.4970.1 >prot_Ecto-sp13_S_contig16982.4970.1 ID=prot_Ecto-sp13_S_contig16982.4970.1|Name=mRNA_Ecto-sp13_S_contig16982.4970.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=519bp VDVGSLSNACSSLWQLLKFFDKAGRGDDKVALEEMISGFRKIRRKWATVKback to top mRNA from alignment at Ecto-sp13_S_contig16982:523..3752- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16982.4970.1 ID=mRNA_Ecto-sp13_S_contig16982.4970.1|Name=mRNA_Ecto-sp13_S_contig16982.4970.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3230bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16982:523..3752- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16982:523..3752- >mRNA_Ecto-sp13_S_contig16982.4970.1 ID=mRNA_Ecto-sp13_S_contig16982.4970.1|Name=mRNA_Ecto-sp13_S_contig16982.4970.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1557bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16982:523..3752- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |