mRNA_Ecto-sp13_S_contig16976.4966.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16976.4966.1
Unique NamemRNA_Ecto-sp13_S_contig16976.4966.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16976.4966.1 vs. uniprot
Match: D8LFB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFB4_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 1.120e-71
Identity = 110/118 (93.22%), Postives = 113/118 (95.76%), Query Frame = 1 
Query:    1 DSTVDQEDSSAWAIFVQRPDGTEVSGNQMTGSKSMILRDDLEDGASPIVNSNTILTPPLTSVRVRTANTHYSGNSGDGRCDGCSRIGLVALSTGCFTQDTASSDSEVDAYITDQQCAL 354
            DSTVDQEDSSAWAIFVQRPDGTEVSGNQ+TGSKS+ILRDDLE GASP VNSNTI TP LTSVRVRTANTHYSGNSGDGRCDGCSRIGLVA STGCFTQD+ASSDSEVDAYITDQQCAL
Sbjct:   72 DSTVDQEDSSAWAIFVQRPDGTEVSGNQITGSKSLILRDDLEGGASPTVNSNTIQTPTLTSVRVRTANTHYSGNSGDGRCDGCSRIGLVASSTGCFTQDSASSDSEVDAYITDQQCAL 189
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16976.4966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFB4_ECTSI1.120e-7193.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16976contigEcto-sp13_S_contig16976:847..2071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size357
Hectar predicted targeting categoryother localisation
Exons3
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462888.3264236-CDS-Ecto-sp13_S_contig16976:846..9151681462888.3264236-CDS-Ecto-sp13_S_contig16976:846..915Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16976 847..915 +
1681462888.338742-CDS-Ecto-sp13_S_contig16976:1270..13891681462888.338742-CDS-Ecto-sp13_S_contig16976:1270..1389Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16976 1271..1389 +
1681462888.34726-CDS-Ecto-sp13_S_contig16976:1902..20711681462888.34726-CDS-Ecto-sp13_S_contig16976:1902..2071Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16976 1903..2071 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16976.4966.1prot_Ecto-sp13_S_contig16976.4966.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16976 847..2071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16976.4966.1

>prot_Ecto-sp13_S_contig16976.4966.1 ID=prot_Ecto-sp13_S_contig16976.4966.1|Name=mRNA_Ecto-sp13_S_contig16976.4966.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
DSTVDQEDSSAWAIFVQRPDGTEVSGNQMTGSKSMILRDDLEDGASPIVN
SNTILTPPLTSVRVRTANTHYSGNSGDGRCDGCSRIGLVALSTGCFTQDT
ASSDSEVDAYITDQQCAL*
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mRNA from alignment at Ecto-sp13_S_contig16976:847..2071+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16976.4966.1 ID=mRNA_Ecto-sp13_S_contig16976.4966.1|Name=mRNA_Ecto-sp13_S_contig16976.4966.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16976:847..2071+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACAGCACCGTCGACCAGGAGGACAGCTCGGCCTGGGCCATCTTCGTACA
ACGACCCGACGGCACTGAGGTGAAATGCCCCAGCTATCTATGTGTTTAGG
TGCATCTTTCGGGAAGTTTAAACAACCGAAGTCGGTTGGGAGTAGCGCGT
GGTCTTTGCGTTCTCTTTTTTTTTGTGCGTTCCGCAGGGCCTCGTGTCAG
TTGGTTGGGTGGGGGCTACAGTGCGCGTTGTGAAAAGCTCAATAATCTGG
TCATTTTCGCGCGTTTTTTTCACGTTCTCGTCATAGTCTTGCGTCTGGTT
CGTAATGTCTGCAATTGGTGGCAGGCTCCTTTAGCAGTGTTGCAATCAAG
ACGTATTCTCTGTCCGTTGTTTGGCGCCATCATCATTGTAGGCCTGTTGT
GACCCTCCTCCACCACTCACAGAGGTCAGCGGGAACCAGATGACGGGCAG
CAAAAGCATGATCCTGAGGGATGATCTTGAGGATGGTGCCTCACCGATAG
TGAACAGCAACACGATTCTAACGCCCCCGCTCACTTCCGTTCGGTGAGAA
AAAACACCTTCCACGCAGTACGCTCGTCTCGACATCTGGGGTGGTGCGGT
TTTGAACTAGTTTCTTTCATTCGCTTTCACTGGGCAGAATGTCGTTCGGT
GGGGGTAGTGTTCCCGCGGACGATGCGCGCTTGTTTTTGCTGTTCGACTC
TTGATGACGCCATGCATGAAGATAAGACTCCACCCAATACTTTACGCTCT
TTTTCAGCGACCCTCTCGTTCGCGTCTCCCCTTAATCATGATGTTGTCGT
CATGTTTGACTCAACTTCGTACATGTACAACAGACAGAATAATCACCACA
ACGTCTTCCTTCGGCCACGTGGTAGACTTCGCACAGGAGAAAACACGTTG
TGCGTGTTTCGCAATGAGGAACAAGTACATTCTTTCCACACTGTCTGTGC
GGCTAGCGGGAAGAGATTTGACTCGGTTGCGACCCTTACTAACTCTGGTC
GACCATTGCCCCGCCGTCCGTCCGTCCATCCACCCACCCACCCCTTTTCC
CCTCAGCGTCAGGACGGCCAACACACACTACAGTGGAAACAGTGGTGACG
GGAGATGCGACGGCTGCTCAAGGATCGGCCTTGTCGCCCTGAGCACCGGG
TGTTTCACCCAAGATACAGCTTCGAGCGACTCCGAGGTCGACGCCTACAT
CACCGATCAACAGTGTGCTCTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16976:847..2071+

>mRNA_Ecto-sp13_S_contig16976.4966.1 ID=mRNA_Ecto-sp13_S_contig16976.4966.1|Name=mRNA_Ecto-sp13_S_contig16976.4966.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16976:847..2071+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACAGCACCGTCGACCAGGAGGACAGCTCGGCCTGGGCCATCTTCGTACA
ACGACCCGACGGCACTGAGGTCAGCGGGAACCAGATGACGGGCAGCAAAA
GCATGATCCTGAGGGATGATCTTGAGGATGGTGCCTCACCGATAGTGAAC
AGCAACACGATTCTAACGCCCCCGCTCACTTCCGTTCGCGTCAGGACGGC
CAACACACACTACAGTGGAAACAGTGGTGACGGGAGATGCGACGGCTGCT
CAAGGATCGGCCTTGTCGCCCTGAGCACCGGGTGTTTCACCCAAGATACA
GCTTCGAGCGACTCCGAGGTCGACGCCTACATCACCGATCAACAGTGTGC
TCTTTGA
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