mRNA_Ecto-sp13_S_contig16972.4965.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16972.4965.1
Unique NamemRNA_Ecto-sp13_S_contig16972.4965.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16972.4965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16972contigEcto-sp13_S_contig16972:61..1264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1205
Hectar predicted targeting categorysignal peptide
Exons1
Cds size630
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462888.2902236-UTR-Ecto-sp13_S_contig16972:60..6341681462888.2902236-UTR-Ecto-sp13_S_contig16972:60..634Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16972 61..634 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462888.2983048-CDS-Ecto-sp13_S_contig16972:634..12641681462888.2983048-CDS-Ecto-sp13_S_contig16972:634..1264Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16972 635..1264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16972.4965.1prot_Ecto-sp13_S_contig16972.4965.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16972 635..1264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16972.4965.1

>prot_Ecto-sp13_S_contig16972.4965.1 ID=prot_Ecto-sp13_S_contig16972.4965.1|Name=mRNA_Ecto-sp13_S_contig16972.4965.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp
MCLLRHYGAVFFLFGATVSYGASSASFMCSLGVLLDFRVWVWAGSILHVR
DLGVKVAMRVSLFFGLSERCSDQVGNHDVVDAWDMLRFSPFFLLFAVKVE
SGFVARRYCNFDIVASQDLFSAWCRVHCACVRVCHIHGWGDILSNRNENG
DAGFFSFCGSVDCRGHDCLRVGMSEECRFCMRGASFALVFRRKTGTRVKF
RLVEVSAYRG
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mRNA from alignment at Ecto-sp13_S_contig16972:61..1264+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16972.4965.1 ID=mRNA_Ecto-sp13_S_contig16972.4965.1|Name=mRNA_Ecto-sp13_S_contig16972.4965.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16972:61..1264+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTCTGTCTTGAGTGACGTTACGGGCAGTGAGTCGGGTGTTTTGACTTGG
TTATCCCCAGACCGCCTCTTGGCAAAAAAAGCCCCCTCCCCCCCTTCCTT
GGGGTCACACGAACCGTCCGCCGGATGGCTTCGCCACGGGACCGCTGCAC
CTTTTGGCGAATCGCGGCGTTTGCACGCAGTGCCAGCCTCTTAATTTTCT
CGTGCGGCAGCGGATGTGTCGCAATCGAACGGCTGACCGAAATCGCTTTG
GAGGCTTTTCCTCATTTCGGAGCCTACCGCCGTCTCTTTTCAGACTACTT
CAATTTCTTGAAGTGTTTGTGATGTTAACAGCCCAGTAGCGGAATAATTT
TAGTCTAGAGCGATCATGGGAGGTCAATTCATAGCTTGGTGGGCATTTGA
GAGGGTTTCTCGCACGACGTGTGCCGGAGACAGCAGCAGTGACGGCGACA
CCAGAAAGCAGTATCAGCAAGACGTACTGCTCGTACAGTATTGAAAGCGA
GATCTGACGGTTTCAAGATTTCAGACACGACGAAAGACGATCGTGCCATT
TCCGGCGATGCTGCCGTCGAGCCGATGTGCCTGCTGAGACATTATGGTGC
AGTTTTTTTTTTGTTTGGTGCTACAGTATCGTACGGAGCGTCCTCTGCTT
CTTTCATGTGTTCACTTGGGGTGTTGCTCGATTTCAGGGTGTGGGTGTGG
GCAGGTAGTATTCTTCATGTTCGAGATTTGGGAGTGAAGGTCGCGATGAG
AGTTTCGTTATTTTTTGGTTTGTCCGAACGTTGCTCAGACCAAGTAGGAA
ATCACGACGTCGTCGACGCGTGGGACATGCTACGATTCTCGCCCTTTTTT
CTTTTGTTTGCCGTAAAAGTCGAGAGTGGATTTGTGGCAAGACGATATTG
CAACTTCGATATTGTAGCTTCCCAGGATTTGTTTTCAGCATGGTGCCGAG
TGCACTGCGCTTGCGTGCGAGTTTGCCACATACATGGTTGGGGCGACATC
TTGTCCAACCGGAACGAAAATGGTGACGCGGGTTTTTTCTCCTTCTGTGG
TTCAGTCGACTGCCGTGGGCATGATTGCCTTCGTGTCGGTATGTCGGAAG
AGTGCAGGTTTTGCATGCGGGGCGCCTCCTTCGCGTTGGTATTTCGGAGG
AAAACAGGTACGCGGGTAAAATTCCGTCTAGTTGAGGTTTCGGCATATCG
TGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16972:61..1264+

>mRNA_Ecto-sp13_S_contig16972.4965.1 ID=mRNA_Ecto-sp13_S_contig16972.4965.1|Name=mRNA_Ecto-sp13_S_contig16972.4965.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16972:61..1264+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCCTGCTGAGACATTATGGTGCAGTTTTTTTTTTGTTTGGTGCTAC
AGTATCGTACGGAGCGTCCTCTGCTTCTTTCATGTGTTCACTTGGGGTGT
TGCTCGATTTCAGGGTGTGGGTGTGGGCAGGTAGTATTCTTCATGTTCGA
GATTTGGGAGTGAAGGTCGCGATGAGAGTTTCGTTATTTTTTGGTTTGTC
CGAACGTTGCTCAGACCAAGTAGGAAATCACGACGTCGTCGACGCGTGGG
ACATGCTACGATTCTCGCCCTTTTTTCTTTTGTTTGCCGTAAAAGTCGAG
AGTGGATTTGTGGCAAGACGATATTGCAACTTCGATATTGTAGCTTCCCA
GGATTTGTTTTCAGCATGGTGCCGAGTGCACTGCGCTTGCGTGCGAGTTT
GCCACATACATGGTTGGGGCGACATCTTGTCCAACCGGAACGAAAATGGT
GACGCGGGTTTTTTCTCCTTCTGTGGTTCAGTCGACTGCCGTGGGCATGA
TTGCCTTCGTGTCGGTATGTCGGAAGAGTGCAGGTTTTGCATGCGGGGCG
CCTCCTTCGCGTTGGTATTTCGGAGGAAAACAGGTACGCGGGTAAAATTC
CGTCTAGTTGAGGTTTCGGCATATCGTGGG
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