mRNA_Ecto-sp13_S_contig16964.4962.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16964.4962.1
Unique NamemRNA_Ecto-sp13_S_contig16964.4962.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16964.4962.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.860e-26
Identity = 53/64 (82.81%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    7 KTASTCEGGIVGVQASNVCCASSCGSCGGVGCSTRDGGEDNCCGAQIRIADRDCSVTGEAPCIV 198
            + A TCEGGIVGVQASNVCCA SCGSCGG GCS RDGGEDNCCG +IR A+ DCSVTGEAPCIV
Sbjct:  495 RAAGTCEGGIVGVQASNVCCALSCGSCGGDGCSDRDGGEDNCCGVEIRTANLDCSVTGEAPCIV 558
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BLAST of mRNA_Ecto-sp13_S_contig16964.4962.1 vs. uniprot
Match: A0A6H5K3F5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F5_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 4.070e-22
Identity = 40/59 (67.80%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:   22 CEGGIVGVQASNVCCASSCGSCGGVGCSTRDGGEDNCCGAQIRIADRDCSVTGEAPCIV 198
            C+GGIVG+QAS+VCC++SCGSCGG GC+ RDGG + CCG  +R +DR CSVTGEAPC++
Sbjct:   37 CDGGIVGIQASDVCCSASCGSCGGSGCTGRDGGANACCGGGVRASDRFCSVTGEAPCLL 95
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BLAST of mRNA_Ecto-sp13_S_contig16964.4962.1 vs. uniprot
Match: A0A6H5K5T3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5T3_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 4.160e-22
Identity = 38/58 (65.52%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:   22 CEGGIVGVQASNVCCASSCGSCGGVGCSTRDGGEDNCCGAQIRIADRDCSVTGEAPCI 195
            C+GGIVG+QAS+VCC++SCGSCGG GC++RDGG ++CCG  +R + R CS+TGEAPC+
Sbjct:    2 CDGGIVGIQASDVCCSASCGSCGGSGCTSRDGGSESCCGGGVRASGRYCSITGEAPCL 59
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BLAST of mRNA_Ecto-sp13_S_contig16964.4962.1 vs. uniprot
Match: A0A6H5JVK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVK3_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 9.250e-22
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:   22 CEGGIVGVQASNVCCASSCGSCGGVGCSTRDGGEDNCCGAQIRIADRDCSVTGEAPCI 195
            C+GGIVG+QAS+VCC++SCGSCGG GCS RDGG D CCG  +R + R CSVTGEAPC+
Sbjct:    2 CDGGIVGIQASDVCCSASCGSCGGSGCSGRDGGSDACCGGGVRASGRFCSVTGEAPCM 59
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BLAST of mRNA_Ecto-sp13_S_contig16964.4962.1 vs. uniprot
Match: A0A6H5KHK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK8_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.950e-21
Identity = 39/65 (60.00%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    1 LHKTASTCEGGIVGVQASNVCCASSCGSCGGVGCSTRDGGEDNCCGAQIRIADRDCSVTGEAPCI 195
            L      C+GGIVG+QAS+VCC++SCGSCGG GC++RDGG ++CCG  +R + R CS+TGEAPC+
Sbjct:   52 LQAEVPMCDGGIVGIQASDVCCSASCGSCGGSGCTSRDGGSESCCGGGVRASGRYCSITGEAPCM 116
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BLAST of mRNA_Ecto-sp13_S_contig16964.4962.1 vs. uniprot
Match: D7G5D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D5_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 5.770e-21
Identity = 40/59 (67.80%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:   22 CEGGIVGVQASNVCCASSCGSCGGVGCSTRDGGEDNCCGAQIRIADRDCSVTGEAPCIV 198
            C+GGIVG+Q S+VCC+ SCGSCGG GC++RDGG + CCG  +R + RDCSVTGEAPC+V
Sbjct:  209 CDGGIVGIQQSDVCCSLSCGSCGGTGCTSRDGGSEACCGGGVRASGRDCSVTGEAPCVV 267
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BLAST of mRNA_Ecto-sp13_S_contig16964.4962.1 vs. uniprot
Match: A0A6H5JVC9_9PHAE (AMOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC9_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 9.720e-21
Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:   22 CEGGIVGVQASNVCCASSCGSCGGVGCSTRDGGEDNCCGAQIRIADRDCSVTGEAPCIV 198
            C+GGIVG+Q+S+VCC+ SCGSCGG GC+ RDGG D CCG  +R + RDCSVTGEAPC+V
Sbjct:  217 CDGGIVGIQSSDVCCSLSCGSCGGTGCTVRDGGADACCGGGVRASGRDCSVTGEAPCVV 275
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BLAST of mRNA_Ecto-sp13_S_contig16964.4962.1 vs. uniprot
Match: A0A6H5JTV1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV1_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.320e-20
Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:   22 CEGGIVGVQASNVCCASSCGSCGGVGCSTRDGGEDNCCGAQIRIADRDCSVTGEAPCIV 198
            C+GGIVG+QAS+VCC+ SCGSCGG GC+ RDGG ++CCG  +R + RDCSVTGEAPC+V
Sbjct:  307 CDGGIVGIQASDVCCSLSCGSCGGSGCTGRDGGSESCCGGGVRASGRDCSVTGEAPCVV 365
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BLAST of mRNA_Ecto-sp13_S_contig16964.4962.1 vs. uniprot
Match: D7G3T6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T6_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 3.260e-20
Identity = 40/59 (67.80%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:   22 CEGGIVGVQASNVCCASSCGSCGGVGCSTRDGGEDNCCGAQIRIADRDCSVTGEAPCIV 198
            C+GGIVG+Q S+VCC+ SCGSCGG GC++RDGG + CCG  +R + RDCSVTGEAPC+V
Sbjct:  170 CDGGIVGIQQSDVCCSLSCGSCGGTGCTSRDGGSEACCGGGVRASGRDCSVTGEAPCVV 228
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BLAST of mRNA_Ecto-sp13_S_contig16964.4962.1 vs. uniprot
Match: D7G4E0_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E0_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 3.380e-20
Identity = 41/65 (63.08%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    1 LHKTASTCEGGIVGVQASNVCCASSCGSCGGVGCSTRDGGEDNCCGAQIRIADRDCSVTGEAPCI 195
            L    S C+GGIVG+Q+S+VCC++SCGSCGG GCS+RDGG ++CCG  +R + R CSVTGEAPC+
Sbjct:   70 LQAEVSMCDGGIVGIQSSDVCCSASCGSCGGSGCSSRDGGSESCCGGGVRASGRYCSVTGEAPCM 134
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16964.4962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3U7_ECTSI1.860e-2682.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3F5_9PHAE4.070e-2267.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5T3_9PHAE4.160e-2265.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVK3_9PHAE9.250e-2270.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHK8_9PHAE1.950e-2160.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5D5_ECTSI5.770e-2167.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVC9_9PHAE9.720e-2169.49AMOP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JTV1_9PHAE1.320e-2069.49Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G3T6_ECTSI3.260e-2067.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4E0_ECTSI3.380e-2063.08N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16964contigEcto-sp13_S_contig16964:900..1097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score68.2
Seed ortholog evalue1.7e-09
Seed eggNOG ortholog2880.D7FJ68
Preferred nameMTPAP
Model size198
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.importin-alpha family protein binding
EggNOG OGsCOG0086@1,KOG0260@2759,KOG4725@1,KOG4725@2759
EC2.7.7.19
Cds size198
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462888.0319796-CDS-Ecto-sp13_S_contig16964:899..10971681462888.0319796-CDS-Ecto-sp13_S_contig16964:899..1097Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16964 900..1097 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16964.4962.1prot_Ecto-sp13_S_contig16964.4962.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16964 900..1097 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16964.4962.1

>prot_Ecto-sp13_S_contig16964.4962.1 ID=prot_Ecto-sp13_S_contig16964.4962.1|Name=mRNA_Ecto-sp13_S_contig16964.4962.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=66bp
LHKTASTCEGGIVGVQASNVCCASSCGSCGGVGCSTRDGGEDNCCGAQIR
IADRDCSVTGEAPCIV
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mRNA from alignment at Ecto-sp13_S_contig16964:900..1097-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16964.4962.1 ID=mRNA_Ecto-sp13_S_contig16964.4962.1|Name=mRNA_Ecto-sp13_S_contig16964.4962.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16964:900..1097- (Ectocarpus species13 EcNAP12_S_4_19m)
TTACACAAAACAGCGTCAACGTGCGAGGGCGGAATTGTCGGCGTCCAGGC
CAGTAATGTTTGCTGCGCCTCAAGCTGCGGTTCCTGCGGCGGTGTTGGGT
GCAGCACTAGGGATGGTGGAGAAGACAACTGCTGTGGCGCCCAAATCAGG
ATCGCTGATCGCGACTGCTCTGTTACGGGAGAAGCTCCTTGCATTGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16964:900..1097-

>mRNA_Ecto-sp13_S_contig16964.4962.1 ID=mRNA_Ecto-sp13_S_contig16964.4962.1|Name=mRNA_Ecto-sp13_S_contig16964.4962.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16964:900..1097- (Ectocarpus species13 EcNAP12_S_4_19m)
TTACACAAAACAGCGTCAACGTGCGAGGGCGGAATTGTCGGCGTCCAGGC
CAGTAATGTTTGCTGCGCCTCAAGCTGCGGTTCCTGCGGCGGTGTTGGGT
GCAGCACTAGGGATGGTGGAGAAGACAACTGCTGTGGCGCCCAAATCAGG
ATCGCTGATCGCGACTGCTCTGTTACGGGAGAAGCTCCTTGCATTGTG
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