mRNA_Ecto-sp13_S_contig1695.4958.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1695.4958.1
Unique NamemRNA_Ecto-sp13_S_contig1695.4958.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1695.4958.1 vs. uniprot
Match: A0A6H5JRQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRQ7_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 3.070e-27
Identity = 49/51 (96.08%), Postives = 49/51 (96.08%), Query Frame = 2 
Query:    2 NWPGFTTDEFELGGRGTRRCIPVEIKVLAVLHILGRGNYFDDVSEVTGMGE 154
            NWPGFTTDEFELGGRGTRRCIPVE KVLAVL ILGRGNYFDDVSEVTGMGE
Sbjct:  109 NWPGFTTDEFELGGRGTRRCIPVETKVLAVLRILGRGNYFDDVSEVTGMGE 159
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BLAST of mRNA_Ecto-sp13_S_contig1695.4958.1 vs. uniprot
Match: A0A6H5JP98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP98_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 4.690e-26
Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = 2 
Query:    5 WPGFTTDEFELGGRGTRRCIPVEIKVLAVLHILGRGNYFDDVSEVTGMGE 154
            WP FTTDEFELGGRGTRRCIPVEIKVLAVL ILGRGNYFDDVSEVTGMGE
Sbjct:  109 WPVFTTDEFELGGRGTRRCIPVEIKVLAVLRILGRGNYFDDVSEVTGMGE 158
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BLAST of mRNA_Ecto-sp13_S_contig1695.4958.1 vs. uniprot
Match: A0A6H5K8I3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I3_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 6.340e-26
Identity = 49/51 (96.08%), Postives = 49/51 (96.08%), Query Frame = 2 
Query:    2 NWPGFTTDEFELGGRGTRRCIPVEIKVLAVLHILGRGNYFDDVSEVTGMGE 154
            NWPGFTTDEFELGGRGTRRCIPVE KVLAVL ILGRGNYFDDVSEVTGMGE
Sbjct:  109 NWPGFTTDEFELGGRGTRRCIPVETKVLAVLRILGRGNYFDDVSEVTGMGE 159
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BLAST of mRNA_Ecto-sp13_S_contig1695.4958.1 vs. uniprot
Match: A0A6H5KLF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLF8_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.110e-20
Identity = 44/50 (88.00%), Postives = 45/50 (90.00%), Query Frame = 2 
Query:    5 WPGFTTDEFELGGRGTRRCIPVEIKVLAVLHILGRGNYFDDVSEVTGMGE 154
            WPGFTT+EFELGGRGTRRCIPVEI VL    ILGRGNYFDDVSEVTGMGE
Sbjct:   76 WPGFTTNEFELGGRGTRRCIPVEIDVL---RILGRGNYFDDVSEVTGMGE 122
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BLAST of mRNA_Ecto-sp13_S_contig1695.4958.1 vs. uniprot
Match: A0A6H5JHC3_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC3_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.360e-10
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 2 
Query:    5 WPGFTTDEFELGGRGTRRCIPVEIKVLAVLHILGRGNYFDDVSEVTGMGE 154
            W GFTTD  +LGGRGTR CIPVE+KVL      GRGN+FDD+ +++ + E
Sbjct:  114 WKGFTTDATDLGGRGTRPCIPVELKVL------GRGNFFDDIPQLSFISE 157
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BLAST of mRNA_Ecto-sp13_S_contig1695.4958.1 vs. uniprot
Match: A0A6H5K8Q8_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Q8_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 2.500e-7
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 2 
Query:    2 NWPGFTTDEFELGGRGTRRCIPV 70
            NWP FTTDEFELGGRG+RRCIPV
Sbjct:  109 NWPDFTTDEFELGGRGSRRCIPV 131
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BLAST of mRNA_Ecto-sp13_S_contig1695.4958.1 vs. uniprot
Match: A0A6H5J6J6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6J6_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 4.920e-7
Identity = 29/50 (58.00%), Postives = 31/50 (62.00%), Query Frame = 2 
Query:    5 WPGFTTDEFELGGRGTRRCIPVEIKVLAVLHILGRGNYFDDVSEVTGMGE 154
            WP  + D FE              +VLAVL ILGRGNYFDDVSEVTGMGE
Sbjct:   10 WPPLSGDLFE--------------QVLAVLRILGRGNYFDDVSEVTGMGE 45
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BLAST of mRNA_Ecto-sp13_S_contig1695.4958.1 vs. uniprot
Match: A0A6H5JBW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW9_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 1.440e-6
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 2 
Query:   68 VEIKVLAVLHILGRGNYFDDVSEVTGMGE 154
            V  +VLAVL ILGRGNYFDDVSEVTGMGE
Sbjct:    2 VSEQVLAVLRILGRGNYFDDVSEVTGMGE 30
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1695.4958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JRQ7_9PHAE3.070e-2796.08Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP98_9PHAE4.690e-2696.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8I3_9PHAE6.340e-2696.08Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLF8_9PHAE1.110e-2088.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHC3_9PHAE1.360e-1058.00DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5K8Q8_9PHAE2.500e-791.30Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J6J6_9PHAE4.920e-758.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBW9_9PHAE1.440e-686.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1695contigEcto-sp13_S_contig1695:1089..1946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size158
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462887.761925-CDS-Ecto-sp13_S_contig1695:1089..11661681462887.761925-CDS-Ecto-sp13_S_contig1695:1089..1166Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1695 1090..1166 -
1681462887.7720416-CDS-Ecto-sp13_S_contig1695:1867..19461681462887.7720416-CDS-Ecto-sp13_S_contig1695:1867..1946Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1695 1868..1946 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1695.4958.1prot_Ecto-sp13_S_contig1695.4958.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1695 1090..1946 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1695.4958.1

>prot_Ecto-sp13_S_contig1695.4958.1 ID=prot_Ecto-sp13_S_contig1695.4958.1|Name=mRNA_Ecto-sp13_S_contig1695.4958.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
ELAWIHDRRVRAWRERHQALHPRGNKGFGGAAHTGQRKLFRRCLGGHRHG
RG
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mRNA from alignment at Ecto-sp13_S_contig1695:1089..1946-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1695.4958.1 ID=mRNA_Ecto-sp13_S_contig1695.4958.1|Name=mRNA_Ecto-sp13_S_contig1695.4958.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=858bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1695:1089..1946- (Ectocarpus species13 EcNAP12_S_4_19m)
GAACTGGCCTGGATTCACGACAGACGAGTTCGAGCTTGGCGGGAGAGGCA
CCAGGCGCTGCATCCCCGTGGAAATAAAGGTGAGCAAACACGCGCTGCAC
CCTAAAGGTGGGCGTGGGGGTTTGCAGCATGTATGTTGTGTTGCTCTCCA
AGACCAGATGTCGATCAACAAACGAGCACGTACATTCCCCCCGTACATCC
GTATCTCGGCACACAGAGAAGAGAGAGCGCAGTCCGAGGGTTTGCCGGCG
GTGAAGGTTAGCTCTCATCATACACACTCGTCCACACTTACCATCACCAG
GAATTTCACGCAGTCCTCTAGGGGCGTGTAAGGTGCTCCTATGATATAGA
GATTGCCAGCCTTATCTTACGAAACTACGAGAGCCGTCCACGGAAGGATC
GGCGTACCTCAACAGCAAGCTGCTCTCCCGACAAACCAAGCTGGAGTCTA
TCCCTCCGAAACACAAACATATTTTTTGTTTTGTTGTTTCTTCCGCACCG
TAGCTCTCTAGTCCAAAACATCGATGGGAGCACATCGATGGGAGCCCGTA
GTCATGTATGCTCTTCTTGCCAGTGTCGAACATCAACTCTGCTACTGCTG
CTCGTCGCTCACTATCAGAGTTGCTCCTAAACTGGACGAAAATTTTTCGT
CGCTACTTGCACTGAAGCACACACCGCCGTACCGTTGACGTATGTATGTT
GACTCTGGCTATCACACAACATGAAGTCCGCAAACGAATCGTGTCCCTGG
CCGCCGTTGTCTGGTGTTTTTTTCGAACAGGTTTTGGCGGTGCTGCACAT
ACTGGGCAGAGGAAACTATTTCGACGATGTCTCGGAGGTCACCGGCATGG
GCGAGGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1695:1089..1946-

>mRNA_Ecto-sp13_S_contig1695.4958.1 ID=mRNA_Ecto-sp13_S_contig1695.4958.1|Name=mRNA_Ecto-sp13_S_contig1695.4958.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1695:1089..1946- (Ectocarpus species13 EcNAP12_S_4_19m)
GAACTGGCCTGGATTCACGACAGACGAGTTCGAGCTTGGCGGGAGAGGCA
CCAGGCGCTGCATCCCCGTGGAAATAAAGGTTTTGGCGGTGCTGCACATA
CTGGGCAGAGGAAACTATTTCGACGATGTCTCGGAGGTCACCGGCATGGG
CGAGGC
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