mRNA_Ecto-sp13_S_contig16947.4956.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16947.4956.1
Unique NamemRNA_Ecto-sp13_S_contig16947.4956.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16947.4956.1 vs. uniprot
Match: D7FN81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN81_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 4.800e-76
Identity = 126/127 (99.21%), Postives = 126/127 (99.21%), Query Frame = 1
Query:   13 QVEKSRNKELRDLFQAGVGCHHAGMLRADRGLTERAFEDGAIKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGLQDLSMLDVLQVFGRAGRPQYDTSGEAIMITAHKSLDKYLALLAKQTPIES 393
            QVEKSRNKELRDLFQAGVGCHHAGMLRADRGLTERAFEDGAIKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGLQDLSMLDVLQVFGRAGRPQYDTSGEAIMIT HKSLDKYLALLAKQTPIES
Sbjct:  893 QVEKSRNKELRDLFQAGVGCHHAGMLRADRGLTERAFEDGAIKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGLQDLSMLDVLQVFGRAGRPQYDTSGEAIMITTHKSLDKYLALLAKQTPIES 1019          
BLAST of mRNA_Ecto-sp13_S_contig16947.4956.1 vs. uniprot
Match: A0A835Z6M6_9STRA (Sec63 Brl domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6M6_9STRA)

HSP 1 Score: 226 bits (576), Expect = 4.350e-66
Identity = 107/126 (84.92%), Postives = 119/126 (94.44%), Query Frame = 1
Query:   16 VEKSRNKELRDLFQAGVGCHHAGMLRADRGLTERAFEDGAIKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGLQDLSMLDVLQVFGRAGRPQYDTSGEAIMITAHKSLDKYLALLAKQTPIES 393
            V KSRN+ELR LF +GVGCHHAGMLR+DRGLTERAFEDG +++LVCTATLAWGVNLPAHTVIIKGTEVYNPEKGG +DLS+LDVLQ+FGRAGRPQYDTSGEAI+IT HKSLD+YLALLA+ TPIES
Sbjct:  132 VLKSRNRELRQLFASGVGCHHAGMLRSDRGLTERAFEDGGLRLLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGAEDLSILDVLQIFGRAGRPQYDTSGEAILITTHKSLDRYLALLARATPIES 257          
BLAST of mRNA_Ecto-sp13_S_contig16947.4956.1 vs. uniprot
Match: W7TU71_9STRA (Activating signal cointegrator 1 complex subunit 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TU71_9STRA)

HSP 1 Score: 206 bits (523), Expect = 6.020e-59
Identity = 97/127 (76.38%), Postives = 112/127 (88.19%), Query Frame = 1
Query:   13 QVEKSRNKELRDLFQAGVGCHHAGMLRADRGLTERAFEDGAIKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGLQDLSMLDVLQVFGRAGRPQYDTSGEAIMITAHKSLDKYLALLAKQTPIES 393
            QV KSR+ +LR  F AG+G HHAGMLR DR LTER FE+GAI+VLVCTATLAWG+NLPAHTV+IKGTEVY+P+KGG  DLSMLDV+Q+FGRAGRPQYDTSGEA+MIT HK+L +YLALL +Q PIES
Sbjct:  811 QVSKSRSDDLRQHFDAGLGIHHAGMLRPDRSLTERMFENGAIRVLVCTATLAWGINLPAHTVLIKGTEVYSPDKGGFVDLSMLDVMQIFGRAGRPQYDTSGEAVMITTHKALPRYLALLTEQMPIES 937          
BLAST of mRNA_Ecto-sp13_S_contig16947.4956.1 vs. uniprot
Match: A0A7C8ZAS7_OPUST (RNA helicase (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8ZAS7_OPUST)

HSP 1 Score: 191 bits (484), Expect = 1.810e-58
Identity = 90/127 (70.87%), Postives = 105/127 (82.68%), Query Frame = 1
Query:   13 QVEKSRNKELRDLFQAGVGCHHAGMLRADRGLTERAFEDGAIKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGLQDLSMLDVLQVFGRAGRPQYDTSGEAIMITAHKSLDKYLALLAKQTPIES 393
            +V KSRNKEL  LF  G+G HHAGMLRADR LTER F DG +KVLVCTATLAWGVNLPAHTV+IKGT++Y+P+ GG +DL MLDV+Q+FGRAGRPQ+D SGE I+IT+H+ L  YL LL  Q PIES
Sbjct:   57 EVMKSRNKELVGLFDNGIGIHHAGMLRADRALTERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQIYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHEKLAHYLRLLTSQLPIES 183          
BLAST of mRNA_Ecto-sp13_S_contig16947.4956.1 vs. uniprot
Match: A0A812ZGA7_SYMMI (BRR2C protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812ZGA7_SYMMI)

HSP 1 Score: 191 bits (485), Expect = 1.310e-57
Identity = 90/127 (70.87%), Postives = 106/127 (83.46%), Query Frame = 1
Query:   13 QVEKSRNKELRDLFQAGVGCHHAGMLRADRGLTERAFEDGAIKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGLQDLSMLDVLQVFGRAGRPQYDTSGEAIMITAHKSLDKYLALLAKQTPIES 393
            QV+KSR++EL   F  G+GCHHAGMLR+DR LTE+ FE G IKVL CTATLAWGVNLP HTVIIKGTE+Y+PE+GG  DLS+LDV Q+FGRAGRPQYDT+G A+MIT H+SL+ YL +L  Q PIES
Sbjct:   63 QVDKSRSQELISHFYKGMGCHHAGMLRSDRTLTEQLFERGVIKVLCCTATLAWGVNLPGHTVIIKGTELYDPERGGYVDLSILDVFQIFGRAGRPQYDTTGHAVMITPHQSLNNYLGMLTHQAPIES 189          
BLAST of mRNA_Ecto-sp13_S_contig16947.4956.1 vs. uniprot
Match: A0A7S3ARM9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ARM9_9EUKA)

HSP 1 Score: 187 bits (476), Expect = 9.700e-56
Identity = 88/127 (69.29%), Postives = 104/127 (81.89%), Query Frame = 1
Query:   13 QVEKSRNKELRDLFQAGVGCHHAGMLRADRGLTERAFEDGAIKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGLQDLSMLDVLQVFGRAGRPQYDTSGEAIMITAHKSLDKYLALLAKQTPIES 393
            +V KSR+ E+++LF  G G HHAGMLRADR +TER F DG I +LVCTATLAWGVNLPAHTVIIKGT++YNPEKG   DL +LDV+Q+FGRAGRPQ+DTSGE I+ITAH  L  YL +L +Q PIES
Sbjct:   64 EVNKSRSGEVKELFAGGFGVHHAGMLRADRSMTERLFADGLINLLVCTATLAWGVNLPAHTVIIKGTQLYNPEKGAFVDLGVLDVMQIFGRAGRPQFDTSGEGIIITAHAKLAHYLQMLTQQLPIES 190          
BLAST of mRNA_Ecto-sp13_S_contig16947.4956.1 vs. uniprot
Match: A0A7S2ES15_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ES15_9STRA)

HSP 1 Score: 181 bits (459), Expect = 1.950e-55
Identity = 88/127 (69.29%), Postives = 101/127 (79.53%), Query Frame = 1
Query:   13 QVEKSRNKELRDLFQAGVGCHHAGMLRADRGLTERAFEDGAIKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGLQDLSMLDVLQVFGRAGRPQYDTSGEAIMITAHKSLDKYLALLAKQTPIES 393
            +  KSRNKEL + F  G+G HHAGMLR DR L+E+ F DGAIKVL CTATLAWG+NLPAHTV++KGTEVYNPEKGG  DLS+LDV Q+FG AG PQ+DTSGEA +IT+H SL  YL  L K  PIES
Sbjct:   68 RASKSRNKELTEHFYNGLGIHHAGMLRNDRKLSEQMFNDGAIKVLCCTATLAWGINLPAHTVVVKGTEVYNPEKGGAVDLSILDVQQIFGSAGCPQFDTSGEATLITSHDSLAPYLDKLIKAVPIES 194          
BLAST of mRNA_Ecto-sp13_S_contig16947.4956.1 vs. uniprot
Match: A0A059CZQ1_EUCGR (Uncharacterized protein n=4 Tax=Myrtoideae TaxID=1699513 RepID=A0A059CZQ1_EUCGR)

HSP 1 Score: 195 bits (496), Expect = 2.600e-55
Identity = 92/127 (72.44%), Postives = 107/127 (84.25%), Query Frame = 1
Query:   13 QVEKSRNKELRDLFQAGVGCHHAGMLRADRGLTERAFEDGAIKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGLQDLSMLDVLQVFGRAGRPQYDTSGEAIMITAHKSLDKYLALLAKQTPIES 393
            +V KSRNK+L  LF+AGVG HHAGMLRADRGLTER F DG +KVLVCTATLAWGVNLPAHTV+IKGT++Y+P+ GG +DL MLDV+Q+FGRAGRPQ+D SGE I+IT+H  L  YL LL  Q PIES
Sbjct:  728 EVHKSRNKDLVQLFEAGVGVHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWKDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLSYYLRLLTSQLPIES 854          
BLAST of mRNA_Ecto-sp13_S_contig16947.4956.1 vs. uniprot
Match: A0A2J6LME3_LACSA (Uncharacterized protein n=1 Tax=Lactuca sativa TaxID=4236 RepID=A0A2J6LME3_LACSA)

HSP 1 Score: 195 bits (495), Expect = 3.540e-55
Identity = 93/131 (70.99%), Postives = 108/131 (82.44%), Query Frame = 1
Query:    1 DVVFQVEKSRNKELRDLFQAGVGCHHAGMLRADRGLTERAFEDGAIKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGLQDLSMLDVLQVFGRAGRPQYDTSGEAIMITAHKSLDKYLALLAKQTPIES 393
            D + +V KSRNKEL  LF +GVG HHAGMLRADRGLTER F DG +KVLVCTATLAWGVNLPAHTV+IKGT++Y+P+ GG +DL MLDV+Q+FGRAGRPQ+D SGE I+IT+H  L  YL LL  Q PIES
Sbjct:  693 DKLMEVSKSRNKELVQLFGSGVGIHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLLTSQLPIES 823          
BLAST of mRNA_Ecto-sp13_S_contig16947.4956.1 vs. uniprot
Match: UPI000D626821 (DExH-box ATP-dependent RNA helicase DExH14 isoform X1 n=2 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=UPI000D626821)

HSP 1 Score: 194 bits (493), Expect = 6.590e-55
Identity = 93/130 (71.54%), Postives = 107/130 (82.31%), Query Frame = 1
Query:    4 VVFQVEKSRNKELRDLFQAGVGCHHAGMLRADRGLTERAFEDGAIKVLVCTATLAWGVNLPAHTVIIKGTEVYNPEKGGLQDLSMLDVLQVFGRAGRPQYDTSGEAIMITAHKSLDKYLALLAKQTPIES 393
            V  +V KSRNKEL  LF +GVG HHAGMLRADRGLTER F DG +KVLVCTATLAWGVNLPAHTV+IKGT++Y+P+ GG +DL MLDV+Q+FGRAGRPQ+D SGE I+IT+H  L  YL LL  Q PIES
Sbjct:  722 VKMEVSKSRNKELVQLFTSGVGIHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLLTSQLPIES 851          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16947.4956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN81_ECTSI4.800e-7699.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z6M6_9STRA4.350e-6684.92Sec63 Brl domain-containing protein n=1 Tax=Tribon... [more]
W7TU71_9STRA6.020e-5976.38Activating signal cointegrator 1 complex subunit 3... [more]
A0A7C8ZAS7_OPUST1.810e-5870.87RNA helicase (Fragment) n=1 Tax=Opuntia streptacan... [more]
A0A812ZGA7_SYMMI1.310e-5770.87BRR2C protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A7S3ARM9_9EUKA9.700e-5669.29Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S2ES15_9STRA1.950e-5569.29Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A059CZQ1_EUCGR2.600e-5572.44Uncharacterized protein n=4 Tax=Myrtoideae TaxID=1... [more]
A0A2J6LME3_LACSA3.540e-5570.99Uncharacterized protein n=1 Tax=Lactuca sativa Tax... [more]
UPI000D6268216.590e-5571.54DExH-box ATP-dependent RNA helicase DExH14 isoform... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16947contigEcto-sp13_S_contig16947:1225..2773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score256.5
Seed ortholog evalue6.6e-66
Seed eggNOG ortholog2880.D7FN81
Model size393
KEGG koko:K12854,ko:K18663
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.response to ionizing radiation
EggNOG OGsCOG1204@1,KOG0952@2759
EC3.6.4.12,3.6.4.13
Cds size393
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462887.6442337-CDS-Ecto-sp13_S_contig16947:1224..12641681462887.6442337-CDS-Ecto-sp13_S_contig16947:1224..1264Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16947 1225..1264 -
1681462887.654423-CDS-Ecto-sp13_S_contig16947:1661..17411681462887.654423-CDS-Ecto-sp13_S_contig16947:1661..1741Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16947 1662..1741 -
1681462887.6645887-CDS-Ecto-sp13_S_contig16947:2224..23561681462887.6645887-CDS-Ecto-sp13_S_contig16947:2224..2356Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16947 2225..2356 -
1681462887.6822815-CDS-Ecto-sp13_S_contig16947:2632..27731681462887.6822815-CDS-Ecto-sp13_S_contig16947:2632..2773Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16947 2633..2773 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16947.4956.1prot_Ecto-sp13_S_contig16947.4956.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16947 1225..2773 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16947.4956.1

>prot_Ecto-sp13_S_contig16947.4956.1 ID=prot_Ecto-sp13_S_contig16947.4956.1|Name=mRNA_Ecto-sp13_S_contig16947.4956.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
DVVFQVEKSRNKELRDLFQAGVGCHHAGMLRADRGLTERAFEDGAIKVLV
CTATLAWGVNLPAHTVIIKGTEVYNPEKGGLQDLSMLDVLQVFGRAGRPQ
YDTSGEAIMITAHKSLDKYLALLAKQTPIES
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mRNA from alignment at Ecto-sp13_S_contig16947:1225..2773-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16947.4956.1 ID=mRNA_Ecto-sp13_S_contig16947.4956.1|Name=mRNA_Ecto-sp13_S_contig16947.4956.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1549bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16947:1225..2773- (Ectocarpus species13 EcNAP12_S_4_19m)
GACGTGGTGTTTCAGGTGGAGAAATCCCGTAACAAGGAGCTGCGGGACCT GTTTCAGGCGGGCGTGGGCTGCCACCACGCCGGAATGCTCCGTGCCGACA GGGGCCTGACGGAGAGAGCATTCGAAGACGGCGCCATTAAGGTGCCGCTT GATGGGGGAAGCGCTTTGGCTGATGTGTGCACAGTGCTCGGCTCTAGTCG GGTGCAACACGAATCTACCAGCCCCCTGATATGAAAAGACAAGAACAAGG GTAGATATGGTCCTGATCGGGTTTGAGGTTCGTTCTGCAGGGTTTCGAAA CCTCCACTGTTGTTGGTTCCCCTTGTTTTTGGTCGTTATTGCGCCCCCAT CCTTTGGAAGCTGCGTGAAGCCACGGCAAATTCCCCTGATCTTGTTGTTA TGTTTTTTTGAGTGAAGGTGCTGGTGTGCACAGCTACGCTGGCGTGGGGC GTCAACCTCCCGGCGCACACGGTGATCATCAAGGGCACGGAGGTTTACAA CCCGGAGAAGGGTGGTCTGCAGGACCTAAGCATGCTCGATGTGCTCCAGG TGAGACACCCCAACACTGCTGCTCAGGCCCAGAGGAGGAGTTCGCGTGGA AGCCGTGGAGAGTTAGGTCTGTCTGTTACTACAGTATGCTATTCTGTTGA TATGGAACATTGTTTCAGGCTTAAGAAGCAGGCGCAAGCCTACGATCCGT TGTACCATGAACAAACACGAAAGATAGAAATACCTTGCTACGGAAAAATA TGCGAGGAGAAGAACGATGCCGACGTTTGTGTGGTTACTGTCCCCTGAAT TAGCATCCCCTCTCAACCAAGCTTCCCGGCCGCTACAGCCGCAACTACCT TGCGCTTCATACGTCATGGGCGCTCCAGCCCCATCCCTTCTGCTCTGCTC AAGACTTTTTGCCTGGACTTTGCGACCCCTCCCCCAACTGTACCCTCTTG AGCTCGAAATGTCACCCGAGCGGTCTCCCCGACATTTGGTGACCCCGGTC GTTTCGCTTTTTTTGTTTTTCTCTTCTTCCAGGTGTTTGGGCGTGCTGGG CGGCCTCAGTATGACACCAGCGGGGAAGCAATCATGATCACAGCACACAA GTCGCTCGACAAGTAAGCACTGTCACCATGCTGTGTGTTTTCTTCTGTTC ATGTGTCGTTCCACGAGCCAGCGGCACCACACTGATGCTGCTTCGTGATG GATATAGATGGACATGCCAGTGTCTCGTGTGTATTGGTACAGTCGTGGAA TACGAGTGGATGATGTCGTGGTCATTGGTGCTATAGAAAAGTAGCATGTG TTTAATTCGTCGGCAGGGTTACGTTGGAGTCACGTCATTGTGTGCTTTTG TCGTTCTTTGTCGAGGTGGGATTCGTGCTTAGAACCTCTTTTGGTACCTT CAAAAAAACACGAGTTCGTGCTGTGCCGACATGATCTACGATCTACGACC AACGCCACAATATTCCGACGAAACGACCCGCACCGAAACCACGACAAAAC CGCCAAAAGGTACCTGGCCCTGCTGGCGAAGCAAACGCCCATCGAGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16947:1225..2773-

>mRNA_Ecto-sp13_S_contig16947.4956.1 ID=mRNA_Ecto-sp13_S_contig16947.4956.1|Name=mRNA_Ecto-sp13_S_contig16947.4956.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16947:1225..2773- (Ectocarpus species13 EcNAP12_S_4_19m)
GACGTGGTGTTTCAGGTGGAGAAATCCCGTAACAAGGAGCTGCGGGACCT
GTTTCAGGCGGGCGTGGGCTGCCACCACGCCGGAATGCTCCGTGCCGACA
GGGGCCTGACGGAGAGAGCATTCGAAGACGGCGCCATTAAGGTGCTGGTG
TGCACAGCTACGCTGGCGTGGGGCGTCAACCTCCCGGCGCACACGGTGAT
CATCAAGGGCACGGAGGTTTACAACCCGGAGAAGGGTGGTCTGCAGGACC
TAAGCATGCTCGATGTGCTCCAGGTGTTTGGGCGTGCTGGGCGGCCTCAG
TATGACACCAGCGGGGAAGCAATCATGATCACAGCACACAAGTCGCTCGA
CAAGTACCTGGCCCTGCTGGCGAAGCAAACGCCCATCGAGAGC
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