mRNA_Ecto-sp13_S_contig16899.4928.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16899.4928.1
Unique NamemRNA_Ecto-sp13_S_contig16899.4928.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16899.4928.1 vs. uniprot
Match: A0A6H5K3D6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D6_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 2.800e-28
Identity = 52/79 (65.82%), Postives = 60/79 (75.95%), Query Frame = 1
Query:    7 STDRDSLLALFNATDGANWKNNNRWGTDADLSQWNGVGVNDQGRVVELDLRYNKLRGPIPPQLANLGALNLLDLSANEL 243
            STDR +L+ALFNAT GANWK N +W TDA L QW GV VND GRVV+L LRYN L+G IP QL +LGAL  L+L  N+L
Sbjct:   10 STDRAALVALFNATGGANWKKNTKWNTDAPLGQWYGVEVNDAGRVVKLSLRYNNLKGHIPRQLGDLGALMTLNLGVNKL 88          
BLAST of mRNA_Ecto-sp13_S_contig16899.4928.1 vs. uniprot
Match: D7FJV1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 7.470e-26
Identity = 52/71 (73.24%), Postives = 59/71 (83.10%), Query Frame = 1
Query:    1 MASTDRDSLLALFNATDGANWKNNNRWGTDADLSQWNGVGVNDQGRVVELDLRYNKLRGPIPPQLANLGAL 213
            MASTDRD L+AL+NAT+GANW+N+  WGTDADLSQW GV VN QGRVV LDL +N LRG IPP+L NL AL
Sbjct:    1 MASTDRDVLVALYNATEGANWQNSINWGTDADLSQWFGVTVNHQGRVVRLDLSFNNLRGHIPPELGNLAAL 71          
BLAST of mRNA_Ecto-sp13_S_contig16899.4928.1 vs. uniprot
Match: A0A6H5K8T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T5_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 6.440e-24
Identity = 48/80 (60.00%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    7 STDRDSLLALFNATDGANWKNNNRWGTDADLSQWNGVGVNDQGRVVELDLRYNKLRGPIPPQLANLGALNLLDLSANELI 246
            STDRD+L+AL++ATDGANWK+   W TD  L +W GV  NDQGRVV LDL  NKL G IP  L +L AL  L+L +N+LI
Sbjct:  110 STDRDALVALYDATDGANWKSKQNWNTDLPLGRWRGVEANDQGRVVGLDLPDNKLHGHIPSDLGHLSALQKLNLLSNQLI 189          
BLAST of mRNA_Ecto-sp13_S_contig16899.4928.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 7.030e-23
Identity = 49/80 (61.25%), Postives = 59/80 (73.75%), Query Frame = 1
Query:    1 MASTDRDSLLALFNATDGANWKNNNRWGTDADLSQWNGVGVNDQGRVVELDLRYNKLRGPIPPQLANLGALNLLDLSANE 240
            MA TDRD L+AL+NATDG NWKN   W T+ADLS W+GV  +DQGRVV+L L  NKLRG IPPQL NL  + L ++  N+
Sbjct:    1 MAPTDRDVLVALYNATDGPNWKNKTNWDTNADLSDWHGVKADDQGRVVKLSLSANKLRGSIPPQLGNL--IELKEMQFND 78          
BLAST of mRNA_Ecto-sp13_S_contig16899.4928.1 vs. uniprot
Match: A0A6H5KQP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQP2_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.170e-22
Identity = 44/74 (59.46%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    1 MASTDRDSLLALFNATDGANWKNNNRWGTDADLSQWNGVGVNDQGRVVELDLRYNKLRGPIPPQLANLGALNLL 222
            M STDR++L++LF +T GA W   + W TDADL+ WNGV VN QGRVV LDL+YN L+G IPP+L  L AL  L
Sbjct:    1 MVSTDREALVSLFRSTGGAGWIRRDNWDTDADLATWNGVNVNVQGRVVNLDLQYNNLQGSIPPELGKLAALRAL 74          
BLAST of mRNA_Ecto-sp13_S_contig16899.4928.1 vs. uniprot
Match: D8LF65_ECTSI (Hypothetical leucine-rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF65_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 4.170e-21
Identity = 43/77 (55.84%), Postives = 54/77 (70.13%), Query Frame = 1
Query:    1 MASTDRDSLLALFNATDGANWKNNNRWGTDADLSQWNGVGVNDQGRVVELDLRYNKLRGPIPPQLANLGALNLLDLS 231
            M++ DR +L+ALF +TDGANWK N+ W TDA+L+ W GV VND+GRVV+L L  N L GPIP  L  L  L  L +S
Sbjct:    1 MSTMDRAALIALFRSTDGANWKTNSNWDTDAELATWAGVEVNDEGRVVQLILPDNNLHGPIPEALGTLNELTHLSMS 77          
BLAST of mRNA_Ecto-sp13_S_contig16899.4928.1 vs. uniprot
Match: D7FSL6_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL6_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 5.350e-21
Identity = 44/76 (57.89%), Postives = 59/76 (77.63%), Query Frame = 1
Query:    1 MASTDRDSLLALFNATDGANWKNNNRWGTDADLSQWNGVGVNDQGRVVELDLRYNKLRGPIPPQLANLGALNLLDL 228
            MA TDR +L+ L+ AT+G +WKNN+ W T+++LS W+GV VNDQGRVV+L L YN LRGPIPP++ +L A+  L L
Sbjct:    1 MAQTDRAALVVLYVATNGTSWKNNDNWSTESNLSLWHGVKVNDQGRVVDLSLGYNNLRGPIPPEIGDLVAMTGLYL 76          
BLAST of mRNA_Ecto-sp13_S_contig16899.4928.1 vs. uniprot
Match: D8LFK2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK2_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 9.770e-21
Identity = 45/71 (63.38%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    1 MASTDRDSLLALFNATDGANWKNNNRWGTDADLSQWNGVGVNDQGRVVELDLRYNKLRGPIPPQLANLGAL 213
            MA TDR +L+AL+NAT GA WKNN  W T A LSQW+GV VN QGRVV+L L +N LRGPIP +L  L  L
Sbjct:   71 MAQTDRKALVALYNATGGAEWKNNQNWTTSAALSQWHGVEVNTQGRVVKLSLGWNNLRGPIPKELGALSRL 141          
BLAST of mRNA_Ecto-sp13_S_contig16899.4928.1 vs. uniprot
Match: A0A6H5JFA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA4_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.830e-20
Identity = 46/73 (63.01%), Postives = 51/73 (69.86%), Query Frame = 1
Query:    1 MASTDRDSLLALFNATDGANWKNNNRWGTDADLSQWNGVGVNDQGRVVELDLRYNKLRGPIPPQLANLGALNL 219
            MA TDR+SL A +NATDGA W  N  WG+ A LS W GV  NDQGRVV+L L  N LRGPIP +L NL AL L
Sbjct:   35 MAQTDRESLTAFYNATDGAKWIRNTNWGSGAPLSDWYGVEANDQGRVVKLYLSSNNLRGPIPLELGNLSALQL 107          
BLAST of mRNA_Ecto-sp13_S_contig16899.4928.1 vs. uniprot
Match: D7FX69_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX69_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 4.860e-20
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    1 MASTDRDSLLALFNATDGANWKNNNRWGTDADLSQWNGVGVNDQGRVVELDLRYNKLRGPIPPQLANLGALNLLDLSANEL 243
            MASTDR++L+ALF +T GA W+    W TDA ++ WNGV VNDQGRVV+L L+   LRGPIPP    + AL  L L  NEL
Sbjct:    1 MASTDREALVALFRSTGGAGWRQRGNWDTDAAIAIWNGVEVNDQGRVVKLSLKLKSLRGPIPP---GISALESLSLGYNEL 78          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16899.4928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3D6_9PHAE2.800e-2865.82Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FJV1_ECTSI7.470e-2673.24LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5K8T5_9PHAE6.440e-2460.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKS5_ECTSI7.030e-2361.25LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5KQP2_9PHAE1.170e-2259.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF65_ECTSI4.170e-2155.84Hypothetical leucine-rich repeat protein n=1 Tax=E... [more]
D7FSL6_ECTSI5.350e-2157.89Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D8LFK2_ECTSI9.770e-2163.38Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JFA4_9PHAE1.830e-2063.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX69_ECTSI4.860e-2056.79LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16899contigEcto-sp13_S_contig16899:183..1571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score107.8
Seed ortholog evalue2.4e-21
Seed eggNOG ortholog2880.D7FJV1
Model size248
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K01188
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772
Exons2
EggNOG OGs2CYK8@1,2S4YE@2759
EC3.2.1.21
Cds size246
CAZyGH1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462885.1163764-CDS-Ecto-sp13_S_contig16899:182..3571681462885.1163764-CDS-Ecto-sp13_S_contig16899:182..357Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16899 183..357 +
1681462885.1291966-CDS-Ecto-sp13_S_contig16899:1500..15711681462885.1291966-CDS-Ecto-sp13_S_contig16899:1500..1571Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16899 1501..1571 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16899.4928.1prot_Ecto-sp13_S_contig16899.4928.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16899 183..1571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16899.4928.1

>prot_Ecto-sp13_S_contig16899.4928.1 ID=prot_Ecto-sp13_S_contig16899.4928.1|Name=mRNA_Ecto-sp13_S_contig16899.4928.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
MASTDRDSLLALFNATDGANWKNNNRWGTDADLSQWNGVGVNDQGRVVEL
DLRYNKLRGPIPPQLANLGALNLLDLSANELI
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mRNA from alignment at Ecto-sp13_S_contig16899:183..1571+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16899.4928.1 ID=mRNA_Ecto-sp13_S_contig16899.4928.1|Name=mRNA_Ecto-sp13_S_contig16899.4928.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1389bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16899:183..1571+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTCGACCGATCGTGACTCACTGCTTGCCCTATTTAACGCCACCGA CGGAGCTAATTGGAAGAACAACAATAGATGGGGCACGGATGCCGACCTCT CGCAATGGAACGGTGTAGGAGTCAACGACCAGGGCCGCGTGGTGGAGCTT GATCTGCGATACAACAAGCTCCGAGGTATATTACGGCCTAAATGCGGAAC TTGCTTACTGAATATTTGGTGGTTGGTTTTCTTGCTGACATCCATCCGCT GTCGCTGTTCGCAAGCATGTATGCAAAAGAGTCACGAGTGTGTAGTGATG TCAGCAGTGCACTTGGATAGGAAATAAGAGTGTAGAGGACGTCTTTTCGA GTCGAGACGGCCCTTCTAGAACATTTATCCTTATATGAATCCTGTGTGCG TTGGCGAATAGCGTTCCCGAACCTTTTTTTTTCGTAGTCGTCGCCAGTAA GCTCGTTGCTGCTGAGTCAAAGTGCCTGCAACTCGCCCAGGGCTCCGAGC ACCTTGGGCATGGAACGTGCACGCAACAATTTGAAAGTCGGGGACCTGTT ACTCTCAGAAGGTGTAACGCCATGTAGCTCGCTCAGTTTTCTCAAATGTT ATATGTCGAAGGCTACTCGACAACGCGTAGCGAGAGATGTCCCGCGAGTT CCGCAGTTATGAAATTTCGTACCCGGCTTCGCATAGGCGGGATTCAAGCA TTCCAGTCATGATGTGGGCACGCCGAATATGTCGGAGACACTTACCGCTG AGTTTGTTTTGGGAGAGGTAAAGCGTTTCCAGCTTGACGAGCTGTCCGAG CGACGCCGGGATTTCACCTGCATCGTATTTGGGGGATGGGACGGGTCGTT TGGTTCATAGGTGGTATCTTGAACAAAGTATGTAGTTTTCAAGAGTATCG ATCTCGCGTAGCAAAAGACGTCCCGCGAGTGCCGCATTTGTGAAATTTCG TACTCGCCTACACGTACACAGGATTCATCTGCATATACGGCAACTTGACA GAAGGTTGGAATTGTGTGATACGGGCCGCAGGGGCTCACCGCTCAGCTCG TTCCCGTTGAGGTATAGCTCTAGCAGTTCCGTGAGTTTTCCCAGCTCCGC CAGGATGGTGCCTGCCAGACGAAAGAGAGTAAGAAGTTAGCTGGGGTAGA AAATAAATCCCCTGACGTCTAGAAAAACGGTCCTGCCAACGCGTAGGCGA GTACGAAATTTCACAATTGCGGAACTCGCGGGACATCTTTTGCTACGGGT GAGATGTTCTAGAACAAAATCGTATGTTGTTCAGGATTCCATGCGCTGGC TTGCTCGCATATCAACAGGACCCATTCCACCGCAGCTAGCAAATCTCGGC GCCTTGAATCTTCTGGACCTCAGCGCCAACGAGTTAATT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16899:183..1571+

>mRNA_Ecto-sp13_S_contig16899.4928.1 ID=mRNA_Ecto-sp13_S_contig16899.4928.1|Name=mRNA_Ecto-sp13_S_contig16899.4928.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16899:183..1571+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTCGACCGATCGTGACTCACTGCTTGCCCTATTTAACGCCACCGA
CGGAGCTAATTGGAAGAACAACAATAGATGGGGCACGGATGCCGACCTCT
CGCAATGGAACGGTGTAGGAGTCAACGACCAGGGCCGCGTGGTGGAGCTT
GATCTGCGATACAACAAGCTCCGAGGACCCATTCCACCGCAGCTAGCAAA
TCTCGGCGCCTTGAATCTTCTGGACCTCAGCGCCAACGAGTTAATT
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