mRNA_Ecto-sp13_S_contig16894.4926.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16894.4926.1
Unique NamemRNA_Ecto-sp13_S_contig16894.4926.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16894.4926.1 vs. uniprot
Match: D7FH79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH79_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 5.140e-36
Identity = 60/95 (63.16%), Postives = 81/95 (85.26%), Query Frame = 1
Query:    1 KCWCGDNAAYDANGAGVCDMSCSGDSSEVCGGSYSMNVYASLDVEEPIYLGCYSDPPADNRLFELLVDSSENMTAAVCLDHCVSYEFYGTQYGTE 285
            +CWCGDNA YDANGAG CDM+CSGD+SE+CGG Y+M+VY ++D  +P YLGCYSDP AD+R+FEL V +S++MT+ +CL +C +Y++YGTQY T+
Sbjct:  150 QCWCGDNADYDANGAGECDMACSGDASEICGGFYTMSVYENVDPVDPSYLGCYSDP-ADSRIFEL-VATSDDMTSEICLGNCGAYQYYGTQYSTQ 242          
BLAST of mRNA_Ecto-sp13_S_contig16894.4926.1 vs. uniprot
Match: A0A6H5K060_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K060_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.370e-32
Identity = 58/97 (59.79%), Postives = 81/97 (83.51%), Query Frame = 1
Query:    1 KCWCGDNAAYDANGAGVCDMSCSGDSSEVCGGSYSMNVYASLDVE--EPIYLGCYSDPPADNRLFELLVDSSENMTAAVCLDHCVSYEFYGTQYGTE 285
            +CWCGDNA YDANG GVCDM+CSGD+SE+CGG Y+M+VY + DV+  +P YLGCY+DP AD+R+F+L V ++++MT+  CL +C +Y++YGTQY T+
Sbjct:  191 ECWCGDNADYDANGEGVCDMACSGDASEICGGFYAMSVYENPDVDPVDPSYLGCYADP-ADSRIFDL-VATADDMTSENCLGNCGAYQYYGTQYSTQ 285          
BLAST of mRNA_Ecto-sp13_S_contig16894.4926.1 vs. uniprot
Match: A0A6H5JVT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT8_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 2.930e-29
Identity = 53/96 (55.21%), Postives = 69/96 (71.88%), Query Frame = 1
Query:    1 KCWCGDNAAYDANGAGVCDMSCSGDSSEVCGGSYSMNVYASLDVEEPIYLGCYSDP-PADNRLFELLVDSSENMTAAVCLDHCVSYEFYGTQYGTE 285
            +CWCGDN  Y  NG GVCDM C+G++ EVCGG Y++++Y++    +P YLGC+SDP  A+ RLF   +D S++MT AVC D C  Y  YGTQYGTE
Sbjct:   10 RCWCGDNVGYAENGPGVCDMPCTGNTDEVCGGQYALSIYSN----DPNYLGCWSDPYTAETRLFSTRIDVSDDMTTAVCDDLCAIYPLYGTQYGTE 101          
BLAST of mRNA_Ecto-sp13_S_contig16894.4926.1 vs. uniprot
Match: A0A6H5KT15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT15_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 2.590e-23
Identity = 45/82 (54.88%), Postives = 61/82 (74.39%), Query Frame = 1
Query:    1 KCWCGDNAAYDANGAGVCDMSCSGDSSEVCGGSYSMNVYASLDVEEPIYLGCYSDP-PADNRLFELLVDSSENMTAAVCLDH 243
            KCWCGDN  Y  NG G C M CSG+S E+CGGSY+++VY++    +P YLGC+SDP  A++RLF +L+D+S++MT AV   H
Sbjct:   36 KCWCGDNVGYAINGPGDCAMPCSGNSDEICGGSYALSVYSN----DPDYLGCWSDPHSAESRLFPILIDTSDDMTTAVSDRH 113          
BLAST of mRNA_Ecto-sp13_S_contig16894.4926.1 vs. uniprot
Match: A0A6H5KAS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS7_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 8.400e-23
Identity = 54/103 (52.43%), Postives = 64/103 (62.14%), Query Frame = 1
Query:    1 KCWCGD-NAAYDANGAGVCDMSCSGDSSEVCGGSYSMNVYASLDVEEPIYLGCYSDPPADNRLFELLVDSSENMTAAV-------CLDHCVSYEFYGTQYGTE 285
            +CWCGD NA Y  NG GVCDM CSG+S E CGGSYSM+VYA    ++P YLGC+SDP AD R+F +   S+  MTA         C   C    +YGTQY  E
Sbjct:  135 ECWCGDINAQYSVNGVGVCDMPCSGNSEESCGGSYSMDVYA----QDPAYLGCFSDP-ADGRMF-VWESSNTAMTAEASRRGRQACASRCSGSAYYGTQYSQE 231          
BLAST of mRNA_Ecto-sp13_S_contig16894.4926.1 vs. uniprot
Match: A0A6H5KQN6_9PHAE (WSC domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN6_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.150e-22
Identity = 45/82 (54.88%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 KCWCGDNAAYDANGAGVCDMSCSGDSSEVCGGSYSMNVYASLDVEEPIYLGCYSDP-PADNRLFELLVDSSENMTAAVCLDH 243
            KCWCGDN  Y  NG G C M CSG+S E+CGGSY+++VY++    +P YLGC+SDP  A+ RLF +L+D+S++MT AV   H
Sbjct:  104 KCWCGDNVGYAINGPGDCAMPCSGNSDEICGGSYALSVYSN----DPDYLGCWSDPHSAETRLFPILIDTSDDMTTAVSDRH 181          
BLAST of mRNA_Ecto-sp13_S_contig16894.4926.1 vs. uniprot
Match: A0A6H5KHE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE9_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 5.860e-20
Identity = 46/75 (61.33%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    4 CWCGD-NAAYDANGAGVCDMSCSGDSSEVCGGSYSMNVYASLDVEEPIYLGCYSDPPADNRLFELLVDSSENMTA 225
            CWCGD NA Y  NG GVCDM CSG+S E CGGSYSM+VYA    ++P YLGC+SDP AD R+F +   S+  MTA
Sbjct:    9 CWCGDINAQYSVNGVGVCDMPCSGNSEESCGGSYSMDVYA----QDPAYLGCFSDP-ADGRMF-VWESSNTAMTA 77          
BLAST of mRNA_Ecto-sp13_S_contig16894.4926.1 vs. uniprot
Match: A0A6H5KL84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL84_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 9.960e-19
Identity = 46/76 (60.53%), Postives = 55/76 (72.37%), Query Frame = 1
Query:    1 KCWCGD-NAAYDANGAGVCDMSCSGDSSEVCGGSYSMNVYASLDVEEPIYLGCYSDPPADNRLFELLVDSSENMTA 225
            +CWCGD NA Y  NG GVCDM CSG+S E CGGSYSM+VYA    ++P YLGC+SDP AD R+F +   S+  MTA
Sbjct:  154 ECWCGDINAQYSVNGVGVCDMPCSGNSEESCGGSYSMDVYA----QDPAYLGCFSDP-ADGRMF-VWESSNTAMTA 223          
BLAST of mRNA_Ecto-sp13_S_contig16894.4926.1 vs. uniprot
Match: A0A6H5JW06_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW06_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.480e-18
Identity = 43/78 (55.13%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    1 KCWCG-DNAAYDANGAGVCDMSCSGDSSEVCGGSYSMNVYASLDVEEPIYLGCYSDPPADNRLFELLVDSSENMTAAV 231
            +CWCG + A YDANG GVCD  C G+  E+CGG Y+M+VY +  +++P YLGCYSDP AD+R+F   + SS+ MTA V
Sbjct:  112 ECWCGAEGADYDANGEGVCDTPCGGNDDEICGGFYAMSVYENAKIDDPSYLGCYSDP-ADSRMFVQDI-SSDAMTAEV 187          
BLAST of mRNA_Ecto-sp13_S_contig16894.4926.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 6.890e-16
Identity = 44/103 (42.72%), Postives = 64/103 (62.14%), Query Frame = 1
Query:    1 KCWCGDNAA--YDANG-AGVCDMSCSGDSSEVCGGSYSMNVYA---SLDVEEPIYLGCYSDPPADNRLFELLVDSSENMTAAVCLDHCVSYE--FYGTQYGTE 285
            +CWC  + +  YD +G  GVCD  C GD SE CGG +S N+Y    +   E+  Y+GCY+D   D  L +++  SS++MTAAVC +HC   +  +YGTQ+ +E
Sbjct: 1194 ECWCSRDGSLDYDRHGDTGVCDYPCRGDESETCGGVHSFNLYRLSWAPAPEDEEYVGCYTDNKGDRVLSDMI--SSDDMTAAVCREHCADKDAPYYGTQFSSE 1294          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16894.4926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH79_ECTSI5.140e-3663.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K060_9PHAE1.370e-3259.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVT8_9PHAE2.930e-2955.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT15_9PHAE2.590e-2354.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS7_9PHAE8.400e-2352.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQN6_9PHAE2.150e-2254.88WSC domain-containing protein n=2 Tax=Ectocarpus s... [more]
A0A6H5KHE9_9PHAE5.860e-2061.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL84_9PHAE9.960e-1960.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW06_9PHAE1.480e-1855.13WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FRE8_ECTSI6.890e-1642.72EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16894contigEcto-sp13_S_contig16894:315..985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score136.0
Seed ortholog evalue9.4e-30
Seed eggNOG ortholog2880.D7FH79
Model size285
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.2.1.37
Cds size285
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462885.0079746-CDS-Ecto-sp13_S_contig16894:314..3711681462885.0079746-CDS-Ecto-sp13_S_contig16894:314..371Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16894 315..371 -
1681462885.0228426-CDS-Ecto-sp13_S_contig16894:757..9851681462885.0228426-CDS-Ecto-sp13_S_contig16894:757..985Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16894 758..985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16894.4926.1prot_Ecto-sp13_S_contig16894.4926.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16894 315..985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16894.4926.1

>prot_Ecto-sp13_S_contig16894.4926.1 ID=prot_Ecto-sp13_S_contig16894.4926.1|Name=mRNA_Ecto-sp13_S_contig16894.4926.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
KCWCGDNAAYDANGAGVCDMSCSGDSSEVCGGSYSMNVYASLDVEEPIYL
GCYSDPPADNRLFELLVDSSENMTAAVCLDHCVSYEFYGTQYGTE
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mRNA from alignment at Ecto-sp13_S_contig16894:315..985-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16894.4926.1 ID=mRNA_Ecto-sp13_S_contig16894.4926.1|Name=mRNA_Ecto-sp13_S_contig16894.4926.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=671bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16894:315..985- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGTGCTGGTGCGGTGACAACGCGGCATACGACGCCAACGGTGCCGGCGT CTGCGACATGTCCTGCTCGGGCGACTCCAGCGAGGTCTGTGGTGGCTCGT ACAGCATGAATGTCTACGCGAGCCTCGACGTAGAGGAGCCCATCTACCTT GGGTGCTACTCCGACCCTCCGGCCGACAACCGCCTCTTCGAGCTGCTGGT GGATTCCTCGGAAAACATGACCGCGGCGGTGAGTGAGCAAGCAAGGCGAG GTTGATACGTCTAACAGCAATCGAAATTTATCCATAAGATTACAAAGTCA GGGCTGCCTAGTCTAATGACTTGGTTTCGGCTTCTGTAACCGTTTGCCGT GGGGTTCGGTAGCCCCGGCACTTTCACTTTCGAGGAGGGCAACTTCCGTT ATCAGCGATACTATCCTCGGTTTCTATAGTCTCCGGTGGTGGGTTGGGCT TTCGATGATGTCATCTTCTGTCGAACGTCCCTGTACGGCGGTTGTCACCA GCGTTCGAAACTGTCGACACGCCACCGCCACCCAACACTTTCCCACGGTA TTCACGTGTGTCTCTTCCTTCGATTTACCGCTGGCTTCCCTCCGATATGA TCGACCGGCCACAGGTCTGCTTGGATCATTGCGTCAGTTACGAATTTTAC GGAACTCAGTATGGGACAGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16894:315..985-

>mRNA_Ecto-sp13_S_contig16894.4926.1 ID=mRNA_Ecto-sp13_S_contig16894.4926.1|Name=mRNA_Ecto-sp13_S_contig16894.4926.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16894:315..985- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGTGCTGGTGCGGTGACAACGCGGCATACGACGCCAACGGTGCCGGCGT
CTGCGACATGTCCTGCTCGGGCGACTCCAGCGAGGTCTGTGGTGGCTCGT
ACAGCATGAATGTCTACGCGAGCCTCGACGTAGAGGAGCCCATCTACCTT
GGGTGCTACTCCGACCCTCCGGCCGACAACCGCCTCTTCGAGCTGCTGGT
GGATTCCTCGGAAAACATGACCGCGGCGGTCTGCTTGGATCATTGCGTCA
GTTACGAATTTTACGGAACTCAGTATGGGACAGAG
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