mRNA_Ecto-sp13_S_contig16894.4926.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16894.4926.1 vs. uniprot
Match: D7FH79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH79_ECTSI) HSP 1 Score: 135 bits (340), Expect = 5.140e-36 Identity = 60/95 (63.16%), Postives = 81/95 (85.26%), Query Frame = 1
Query: 1 KCWCGDNAAYDANGAGVCDMSCSGDSSEVCGGSYSMNVYASLDVEEPIYLGCYSDPPADNRLFELLVDSSENMTAAVCLDHCVSYEFYGTQYGTE 285
+CWCGDNA YDANGAG CDM+CSGD+SE+CGG Y+M+VY ++D +P YLGCYSDP AD+R+FEL V +S++MT+ +CL +C +Y++YGTQY T+
Sbjct: 150 QCWCGDNADYDANGAGECDMACSGDASEICGGFYTMSVYENVDPVDPSYLGCYSDP-ADSRIFEL-VATSDDMTSEICLGNCGAYQYYGTQYSTQ 242
BLAST of mRNA_Ecto-sp13_S_contig16894.4926.1 vs. uniprot
Match: A0A6H5K060_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K060_9PHAE) HSP 1 Score: 127 bits (319), Expect = 1.370e-32 Identity = 58/97 (59.79%), Postives = 81/97 (83.51%), Query Frame = 1
Query: 1 KCWCGDNAAYDANGAGVCDMSCSGDSSEVCGGSYSMNVYASLDVE--EPIYLGCYSDPPADNRLFELLVDSSENMTAAVCLDHCVSYEFYGTQYGTE 285
+CWCGDNA YDANG GVCDM+CSGD+SE+CGG Y+M+VY + DV+ +P YLGCY+DP AD+R+F+L V ++++MT+ CL +C +Y++YGTQY T+
Sbjct: 191 ECWCGDNADYDANGEGVCDMACSGDASEICGGFYAMSVYENPDVDPVDPSYLGCYADP-ADSRIFDL-VATADDMTSENCLGNCGAYQYYGTQYSTQ 285
BLAST of mRNA_Ecto-sp13_S_contig16894.4926.1 vs. uniprot
Match: A0A6H5JVT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT8_9PHAE) HSP 1 Score: 116 bits (291), Expect = 2.930e-29 Identity = 53/96 (55.21%), Postives = 69/96 (71.88%), Query Frame = 1
Query: 1 KCWCGDNAAYDANGAGVCDMSCSGDSSEVCGGSYSMNVYASLDVEEPIYLGCYSDP-PADNRLFELLVDSSENMTAAVCLDHCVSYEFYGTQYGTE 285
+CWCGDN Y NG GVCDM C+G++ EVCGG Y++++Y++ +P YLGC+SDP A+ RLF +D S++MT AVC D C Y YGTQYGTE
Sbjct: 10 RCWCGDNVGYAENGPGVCDMPCTGNTDEVCGGQYALSIYSN----DPNYLGCWSDPYTAETRLFSTRIDVSDDMTTAVCDDLCAIYPLYGTQYGTE 101
BLAST of mRNA_Ecto-sp13_S_contig16894.4926.1 vs. uniprot
Match: A0A6H5KT15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT15_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 2.590e-23 Identity = 45/82 (54.88%), Postives = 61/82 (74.39%), Query Frame = 1
Query: 1 KCWCGDNAAYDANGAGVCDMSCSGDSSEVCGGSYSMNVYASLDVEEPIYLGCYSDP-PADNRLFELLVDSSENMTAAVCLDH 243
KCWCGDN Y NG G C M CSG+S E+CGGSY+++VY++ +P YLGC+SDP A++RLF +L+D+S++MT AV H
Sbjct: 36 KCWCGDNVGYAINGPGDCAMPCSGNSDEICGGSYALSVYSN----DPDYLGCWSDPHSAESRLFPILIDTSDDMTTAVSDRH 113
BLAST of mRNA_Ecto-sp13_S_contig16894.4926.1 vs. uniprot
Match: A0A6H5KAS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS7_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 8.400e-23 Identity = 54/103 (52.43%), Postives = 64/103 (62.14%), Query Frame = 1
Query: 1 KCWCGD-NAAYDANGAGVCDMSCSGDSSEVCGGSYSMNVYASLDVEEPIYLGCYSDPPADNRLFELLVDSSENMTAAV-------CLDHCVSYEFYGTQYGTE 285
+CWCGD NA Y NG GVCDM CSG+S E CGGSYSM+VYA ++P YLGC+SDP AD R+F + S+ MTA C C +YGTQY E
Sbjct: 135 ECWCGDINAQYSVNGVGVCDMPCSGNSEESCGGSYSMDVYA----QDPAYLGCFSDP-ADGRMF-VWESSNTAMTAEASRRGRQACASRCSGSAYYGTQYSQE 231
BLAST of mRNA_Ecto-sp13_S_contig16894.4926.1 vs. uniprot
Match: A0A6H5KQN6_9PHAE (WSC domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN6_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 2.150e-22 Identity = 45/82 (54.88%), Postives = 60/82 (73.17%), Query Frame = 1
Query: 1 KCWCGDNAAYDANGAGVCDMSCSGDSSEVCGGSYSMNVYASLDVEEPIYLGCYSDP-PADNRLFELLVDSSENMTAAVCLDH 243
KCWCGDN Y NG G C M CSG+S E+CGGSY+++VY++ +P YLGC+SDP A+ RLF +L+D+S++MT AV H
Sbjct: 104 KCWCGDNVGYAINGPGDCAMPCSGNSDEICGGSYALSVYSN----DPDYLGCWSDPHSAETRLFPILIDTSDDMTTAVSDRH 181
BLAST of mRNA_Ecto-sp13_S_contig16894.4926.1 vs. uniprot
Match: A0A6H5KHE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE9_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 5.860e-20 Identity = 46/75 (61.33%), Postives = 54/75 (72.00%), Query Frame = 1
Query: 4 CWCGD-NAAYDANGAGVCDMSCSGDSSEVCGGSYSMNVYASLDVEEPIYLGCYSDPPADNRLFELLVDSSENMTA 225
CWCGD NA Y NG GVCDM CSG+S E CGGSYSM+VYA ++P YLGC+SDP AD R+F + S+ MTA
Sbjct: 9 CWCGDINAQYSVNGVGVCDMPCSGNSEESCGGSYSMDVYA----QDPAYLGCFSDP-ADGRMF-VWESSNTAMTA 77
BLAST of mRNA_Ecto-sp13_S_contig16894.4926.1 vs. uniprot
Match: A0A6H5KL84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL84_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 9.960e-19 Identity = 46/76 (60.53%), Postives = 55/76 (72.37%), Query Frame = 1
Query: 1 KCWCGD-NAAYDANGAGVCDMSCSGDSSEVCGGSYSMNVYASLDVEEPIYLGCYSDPPADNRLFELLVDSSENMTA 225
+CWCGD NA Y NG GVCDM CSG+S E CGGSYSM+VYA ++P YLGC+SDP AD R+F + S+ MTA
Sbjct: 154 ECWCGDINAQYSVNGVGVCDMPCSGNSEESCGGSYSMDVYA----QDPAYLGCFSDP-ADGRMF-VWESSNTAMTA 223
BLAST of mRNA_Ecto-sp13_S_contig16894.4926.1 vs. uniprot
Match: A0A6H5JW06_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW06_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 1.480e-18 Identity = 43/78 (55.13%), Postives = 57/78 (73.08%), Query Frame = 1
Query: 1 KCWCG-DNAAYDANGAGVCDMSCSGDSSEVCGGSYSMNVYASLDVEEPIYLGCYSDPPADNRLFELLVDSSENMTAAV 231
+CWCG + A YDANG GVCD C G+ E+CGG Y+M+VY + +++P YLGCYSDP AD+R+F + SS+ MTA V
Sbjct: 112 ECWCGAEGADYDANGEGVCDTPCGGNDDEICGGFYAMSVYENAKIDDPSYLGCYSDP-ADSRMFVQDI-SSDAMTAEV 187
BLAST of mRNA_Ecto-sp13_S_contig16894.4926.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI) HSP 1 Score: 81.3 bits (199), Expect = 6.890e-16 Identity = 44/103 (42.72%), Postives = 64/103 (62.14%), Query Frame = 1
Query: 1 KCWCGDNAA--YDANG-AGVCDMSCSGDSSEVCGGSYSMNVYA---SLDVEEPIYLGCYSDPPADNRLFELLVDSSENMTAAVCLDHCVSYE--FYGTQYGTE 285
+CWC + + YD +G GVCD C GD SE CGG +S N+Y + E+ Y+GCY+D D L +++ SS++MTAAVC +HC + +YGTQ+ +E
Sbjct: 1194 ECWCSRDGSLDYDRHGDTGVCDYPCRGDESETCGGVHSFNLYRLSWAPAPEDEEYVGCYTDNKGDRVLSDMI--SSDDMTAAVCREHCADKDAPYYGTQFSSE 1294 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16894.4926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16894.4926.1 >prot_Ecto-sp13_S_contig16894.4926.1 ID=prot_Ecto-sp13_S_contig16894.4926.1|Name=mRNA_Ecto-sp13_S_contig16894.4926.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp KCWCGDNAAYDANGAGVCDMSCSGDSSEVCGGSYSMNVYASLDVEEPIYLback to top mRNA from alignment at Ecto-sp13_S_contig16894:315..985- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16894.4926.1 ID=mRNA_Ecto-sp13_S_contig16894.4926.1|Name=mRNA_Ecto-sp13_S_contig16894.4926.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=671bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16894:315..985- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16894:315..985- >mRNA_Ecto-sp13_S_contig16894.4926.1 ID=mRNA_Ecto-sp13_S_contig16894.4926.1|Name=mRNA_Ecto-sp13_S_contig16894.4926.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16894:315..985- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |