mRNA_Ecto-sp13_S_contig16883.4918.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16883.4918.1
Unique NamemRNA_Ecto-sp13_S_contig16883.4918.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16883.4918.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 4.390e-28
Identity = 51/71 (71.83%), Postives = 62/71 (87.32%), Query Frame = 2 
Query:    2 TFRKIVPSCFKRNSWNCMNMGMPSKVLSGTMVRIIEQIQRDLMTEGNPHDLELKCYAALASRMDAFVDIFN 214
            TFRK+VPSCF RNSWNCMN+   +KVLSGT+V +IE++QRDL+T G P DLEL CYAALA++MDAF+DIFN
Sbjct:  456 TFRKVVPSCFNRNSWNCMNVSYSAKVLSGTIVCMIEKVQRDLLTMGKPLDLELDCYAALAAKMDAFIDIFN 526
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BLAST of mRNA_Ecto-sp13_S_contig16883.4918.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 5.780e-12
Identity = 34/46 (73.91%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   76 GAIGHDGSYHRADPTRPHDRGKPPRLGIEVLRSTRVEDGRLRRHLQ 213
            GAI  DG+YHRADP RP DRGK PRL I  L  TRVEDGRLRRH Q
Sbjct:  380 GAIRDDGTYHRADPARPLDRGKTPRLAIGELSGTRVEDGRLRRHFQ 425
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16883.4918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JR14_9PHAE4.390e-2871.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRH8_9PHAE5.780e-1273.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16883contigEcto-sp13_S_contig16883:144..651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size217
Hectar predicted targeting categoryother localisation
Exons2
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462884.6015193-CDS-Ecto-sp13_S_contig16883:143..2191681462884.6015193-CDS-Ecto-sp13_S_contig16883:143..219Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16883 144..219 +
1681462884.612304-CDS-Ecto-sp13_S_contig16883:511..6511681462884.612304-CDS-Ecto-sp13_S_contig16883:511..651Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16883 512..651 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16883.4918.1prot_Ecto-sp13_S_contig16883.4918.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16883 144..651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16883.4918.1

>prot_Ecto-sp13_S_contig16883.4918.1 ID=prot_Ecto-sp13_S_contig16883.4918.1|Name=mRNA_Ecto-sp13_S_contig16883.4918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
DLPQDRAVLLQKEQLELHEHGNAFEGAIGHDGSYHRADPTRPHDRGKPPR
LGIEVLRSTRVEDGRLRRHLQR
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mRNA from alignment at Ecto-sp13_S_contig16883:144..651+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16883.4918.1 ID=mRNA_Ecto-sp13_S_contig16883.4918.1|Name=mRNA_Ecto-sp13_S_contig16883.4918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=508bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16883:144..651+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACCTTCCGCAAGATCGTGCCGTCCTGCTTCAAAAGGAACAGCTGGAACT
GCATGAACATGGGAATGCCTTCGAAGGTGATAGACCGCTGTAGAAGCGCA
GTCGTAGATCTAATTGCTCGGGTGTACACTAAATCTTTACATGCGTGTTC
CGTATCACGCGTATGCTCCCCCTACTGCCGTGTCACTCCACATTACTGTC
GACGCGGGTTACAGATCTCGCGTTTCTGAACACGGCGTAACATAAAAACA
AATAGCCTGGCGATGGTCGTGTACACGAAACGCGTATAGACGACGCCAAG
GGGTGCGCATGCAGTCCCGATCAACCTCTTATCCGAGACCGTTTCGTACG
ACGCCCGTCATTCTACAGGTGCTATCGGGCACGATGGTTCGTATCATCGA
GCAGATCCAACGCGACCTCATGACCGAGGGAAACCCCCACGACTTGGAAT
TGAAGTGCTACGCAGCACTCGCGTCGAGGATGGACGCCTTCGTCGACATC
TTCAACGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16883:144..651+

>mRNA_Ecto-sp13_S_contig16883.4918.1 ID=mRNA_Ecto-sp13_S_contig16883.4918.1|Name=mRNA_Ecto-sp13_S_contig16883.4918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16883:144..651+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACCTTCCGCAAGATCGTGCCGTCCTGCTTCAAAAGGAACAGCTGGAACT
GCATGAACATGGGAATGCCTTCGAAGGTGCTATCGGGCACGATGGTTCGT
ATCATCGAGCAGATCCAACGCGACCTCATGACCGAGGGAAACCCCCACGA
CTTGGAATTGAAGTGCTACGCAGCACTCGCGTCGAGGATGGACGCCTTCG
TCGACATCTTCAACGG
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