prot_Ecto-sp13_S_contig1687.4913.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig1687.4913.1
Unique Name	prot_Ecto-sp13_S_contig1687.4913.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	473

Homology

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BLAST of mRNA_Ecto-sp13_S_contig1687.4913.1 vs. uniprot
Match: D7G6G6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6G6_ECTSI)

HSP 1 Score: 754 bits (1947), Expect = 3.040e-269
Identity = 431/559 (77.10%), Postives = 439/559 (78.53%), Query Frame = 0

Query:    1 MDALGLARMEVSRGTLGGLMYFPQYEGMVLWSVIALGNFVIAQGSRCAIPTQT---------------------------------------------------------------------------------------PLGWASLTLCGALLRCWWCNVRLIYLLGLNNDYSKFALLSGFCGLFAAAAVAAMLPPVFLAFDVRAAATALHAWGGAVRGGGDAEGAPGGVSAVVSREDFLAMFLPTFAVVSACVTAAAALPAIRFSQYFSRALGRGSGATLVYRALLIADGVLPWLASLVWITEVPPLVLGDRWGGGDAGGALALRVGVTGLAAWVRLAVGKLQLQAYLEGVKESVLVDLREKKVDSQAVRSKFDARLQYLVIAAAQYAAPALTVLFSLALLVHVSYAATGDDLASGTRRGAGLGVCNAARRAVGLESWATAFAAATGAAEAPNSGAAVGGESTLGLGGEGLAAFVSTIPEIPEAFWSGVVGFLAWWACLSWAVTYAVGVAFWFVFPEDVSVTERVPTDRTTKGKKERVKGXXXXXXXXXXXXXXGKG 472
            MDALGLARMEVSRGTLGGLMYFPQYEGMVLW+VIALGNF IAQGSRCAIPTQT                                                                                       PLGWASLTLCGALLRCWWCNVRLIYLLGLNNDYSKFALLSGFCGLFAAAAVAAMLPP FLAFDVRAAA ALHAWGGAVRGG DA   PGGVSAVVSREDFLAMFLPT AVV+ACVTAAAALPAIRFSQYFSRALGRGSGATLVYRALL+ DGVLPWLASLVWI+EVPPLVLG+RWGGGDAG ALALRVGVTGLAAW RLAVGKLQLQAYLEGVKESVLVDLREKKVDSQ+VRSKFDARLQYLVIAAAQYAAPALTVLFSLALLVHV  AATG DLASGT   AGLGVC+AARR VGLESW TAFAAA GAAEAPNS          GLGG GLAAF+STIPE PEAFWSGV GFLAWWACLSWAVTYAVGVAFWFVFPEDVSVTERVPTDRTTKGKKERVKGXXXXXXXXXXXXXXGKG
Sbjct:   90 MDALGLARMEVSRGTLGGLMYFPQYEGMVLWAVIALGNFFIAQGSRCAIPTQTKCEHRGSAKKEKSPRSGAFCTANLVHSLPSAFFDALRCPPTSSFGVPIAHLDSCLLLLPQTPFTPSFSLALFDVLLLLWRDPSGGGRPLGWASLTLCGALLRCWWCNVRLIYLLGLNNDYSKFALLSGFCGLFAAAAVAAMLPPSFLAFDVRAAAAALHAWGGAVRGGSDAAVPPGGVSAVVSREDFLAMFLPTVAVVAACVTAAAALPAIRFSQYFSRALGRGSGATLVYRALLVVDGVLPWLASLVWISEVPPLVLGERWGGGDAGRALALRVGVTGLAAWARLAVGKLQLQAYLEGVKESVLVDLREKKVDSQSVRSKFDARLQYLVIAAAQYAAPALTVLFSLALLVHVGDAATGGDLASGTGGRAGLGVCDAARRVVGLESWGTAFAAAAGAAEAPNSXXXXXXXXXXGLGGGGLAAFISTIPEFPEAFWSGVTGFLAWWACLSWAVTYAVGVAFWFVFPEDVSVTERVPTDRTTKGKKERVKGXXXXXXXXXXXXXXGKG 648

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1687.4913.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1687.4913.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7G6G6_ECTSI	3.040e-269	77.10	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019395	Transmembrane protein 161A/B	PFAM	PF10268	Tmemb_161AB	coord: 7..426 e-value: 4.9E-16 score: 58.4
IPR019395	Transmembrane protein 161A/B	PANTHER	PTHR13624	FAMILY NOT NAMED	coord: 6..430
None	No IPR available	PANTHER	PTHR13624:SF6	DBJ\|BAA83359.1	coord: 6..430
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..27
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 318..407
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 175..194
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 294..317
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 89..108
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 109..152
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 255..293
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 46..56
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 28..45
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 236..254
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 408..430
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 217..235
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 195..216
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 78..88
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 431..472
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 57..77
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 153..174
None	No IPR available	TMHMM	TMhelix		coord: 20..42
None	No IPR available	TMHMM	TMhelix		coord: 295..317
None	No IPR available	TMHMM	TMhelix		coord: 153..175
None	No IPR available	TMHMM	TMhelix		coord: 408..430
None	No IPR available	TMHMM	TMhelix		coord: 91..113
None	No IPR available	TMHMM	TMhelix		coord: 232..254
None	No IPR available	TMHMM	TMhelix		coord: 195..217

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig1687	contig	Ecto-sp13_S_contig1687:10560..14928 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1687.4913.1	mRNA_Ecto-sp13_S_contig1687.4913.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig1687 9361..16121 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig1687.4913.1 ID=prot_Ecto-sp13_S_contig1687.4913.1|Name=mRNA_Ecto-sp13_S_contig1687.4913.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=473bp
MDALGLARMEVSRGTLGGLMYFPQYEGMVLWSVIALGNFVIAQGSRCAIP
TQTPLGWASLTLCGALLRCWWCNVRLIYLLGLNNDYSKFALLSGFCGLFA
AAAVAAMLPPVFLAFDVRAAATALHAWGGAVRGGGDAEGAPGGVSAVVSR
EDFLAMFLPTFAVVSACVTAAAALPAIRFSQYFSRALGRGSGATLVYRAL
LIADGVLPWLASLVWITEVPPLVLGDRWGGGDAGGALALRVGVTGLAAWV
RLAVGKLQLQAYLEGVKESVLVDLREKKVDSQAVRSKFDARLQYLVIAAA
QYAAPALTVLFSLALLVHVSYAATGDDLASGTRRGAGLGVCNAARRAVGL
ESWATAFAAATGAAEAPNSGAAVGGESTLGLGGEGLAAFVSTIPEIPEAF
WSGVVGFLAWWACLSWAVTYAVGVAFWFVFPEDVSVTERVPTDRTTKGKK
ERVKGKAKAKGGGKGVGAGGKG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019395	Transmembrane_161A/B