mRNA_Ecto-sp13_S_contig16868.4910.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16868.4910.1
Unique NamemRNA_Ecto-sp13_S_contig16868.4910.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16868.4910.1 vs. uniprot
Match: D7FLP3_ECTSI (DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLP3_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 3.750e-59
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 1 
Query:    1 GKTRVLTRRIAHLVRNVGAPAWSILAVTFTKKASEEMRARVRKTLGEDMSGQVALGTFHSICARLLRRHGDALPAVVPGLDSRFSIFDTEDSRRLLTDIIKEMGQD 318
            GKTRVLTRRIAHLVRNVGAPAWSILAVTFTKKASEEMRARVRKT+GED+SGQVALGTFHSICARLLRRHGDALPAVVPGLD RFSIFDTEDSRRLLTDIIKEMGQD
Sbjct:  110 GKTRVLTRRIAHLVRNVGAPAWSILAVTFTKKASEEMRARVRKTVGEDVSGQVALGTFHSICARLLRRHGDALPAVVPGLDGRFSIFDTEDSRRLLTDIIKEMGQD 215
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BLAST of mRNA_Ecto-sp13_S_contig16868.4910.1 vs. uniprot
Match: A0A6I7PMM4_9BACT (DNA helicase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A6I7PMM4_9BACT)

HSP 1 Score: 112 bits (279), Expect = 1.620e-26
Identity = 61/106 (57.55%), Postives = 77/106 (72.64%), Query Frame = 1 
Query:    1 GKTRVLTRRIAHLVRNVGAPAWSILAVTFTKKASEEMRARVRKTLGEDMSGQ--VALGTFHSICARLLRRHGDALPAVVPGLDSRFSIFDTEDSRRLLTDIIKEMG 312
            GKTRV+TRRIAHLVR +G PAWSILA+TFT KA+ EMR RV   LGED      + + TFHS+CARLLRR+ D L   VPGLD+ +SI+D+ D   L+  +I ++G
Sbjct:   71 GKTRVITRRIAHLVR-MGVPAWSILALTFTNKAAGEMRERVGVLLGEDTRAARGLTVATFHSLCARLLRRYADLLR--VPGLDASYSIYDSADQASLMKRVIVDIG 173
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BLAST of mRNA_Ecto-sp13_S_contig16868.4910.1 vs. uniprot
Match: A0A399Z6V0_9CHLR (DNA helicase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A399Z6V0_9CHLR)

HSP 1 Score: 105 bits (263), Expect = 6.950e-26
Identity = 55/106 (51.89%), Postives = 72/106 (67.92%), Query Frame = 1 
Query:    1 GKTRVLTRRIAHLVRNVGAPAWSILAVTFTKKASEEMRARVRKTLGEDMSGQVALGTFHSICARLLRRHGDALPAVVPGLDSRFSIFDTEDSRRLLTDIIKEMGQD 318
            GKTRVLT+R+A L+ + G   + ILAVTFT KA+ EM +RV+  LGED +  + LGTFH+ICARLLRR  + LP     ++S F IFD +D  R++  IIKE   D
Sbjct:   31 GKTRVLTQRVAWLIASEGVRPYQILAVTFTNKAAREMESRVQSLLGEDATQGMMLGTFHAICARLLRREAELLP-----VESNFVIFDADDQERIVKSIIKEFNLD 131
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BLAST of mRNA_Ecto-sp13_S_contig16868.4910.1 vs. uniprot
Match: A0A349BUE5_9FLAO (DNA helicase (Fragment) n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A349BUE5_9FLAO)

HSP 1 Score: 103 bits (256), Expect = 1.420e-25
Identity = 55/106 (51.89%), Postives = 76/106 (71.70%), Query Frame = 1 
Query:    1 GKTRVLTRRIAHLVRNVGAPAWSILAVTFTKKASEEMRARVRKTLGEDMSGQVALGTFHSICARLLRRHGDALPAVVPGLDSRFSIFDTEDSRRLLTDIIKEMGQD 318
            GKTRVLT RIAHL+ + G  ++SILA+TFT KA+ EM++R+ + +GE  +  + +GTFHS+ AR+LR  G+ L     G  S F+I+DT+DS RL+  IIKEMG D
Sbjct:   36 GKTRVLTYRIAHLMAS-GVDSFSILALTFTNKAAREMKSRIAELVGEGEAKNLWMGTFHSVFARILRHEGEKL-----GFPSNFTIYDTQDSDRLIASIIKEMGLD 135
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BLAST of mRNA_Ecto-sp13_S_contig16868.4910.1 vs. uniprot
Match: A0A3N5UTJ7_9CHLR (DNA helicase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5UTJ7_9CHLR)

HSP 1 Score: 106 bits (264), Expect = 1.420e-25
Identity = 54/104 (51.92%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:    1 GKTRVLTRRIAHLVRNVGAPAWSILAVTFTKKASEEMRARVRKTLGEDMSGQVALGTFHSICARLLRRHGDALPAVVPGLDSRFSIFDTEDSRRLLTDIIKEMG 312
            GKTRVLT+RIA+L+   G   W ILAVTFT KA++EM+ARV+  L +     + LGTFHSICAR+LRR  + LP     ++S F IFDT+D  R++  +I+EM 
Sbjct:   31 GKTRVLTQRIAYLIAVEGVRPWQILAVTFTNKAAKEMQARVKSLLPDQAIEGIMLGTFHSICARILRREAEHLP-----IESNFVIFDTDDQERIVKTVIREMN 129
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BLAST of mRNA_Ecto-sp13_S_contig16868.4910.1 vs. uniprot
Match: A0A363U1S3_9CHLR (DNA helicase n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A363U1S3_9CHLR)

HSP 1 Score: 108 bits (270), Expect = 2.700e-25
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:    1 GKTRVLTRRIAHLVRNVGAPAWSILAVTFTKKASEEMRARVRKTLGEDMSGQVALGTFHSICARLLRRHGDALPAVVPGLDSRFSIFDTEDSRRLLTDIIKEMG 312
            GKTRVLT+RIA+L+   G   W ILAVTFT KA++EM+ RVRK L +     + LGTFHSICAR+LRR  D LP     ++S F IFD++D  RL+  +I+E+ 
Sbjct:   31 GKTRVLTQRIAYLIAEEGVRPWQILAVTFTNKAAKEMQERVRKLLPDQAIEGIMLGTFHSICARILRREADHLP-----IESNFVIFDSDDQERLVKSVIRELN 129
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BLAST of mRNA_Ecto-sp13_S_contig16868.4910.1 vs. uniprot
Match: A0A850BW17_9CHLR (DNA helicase (Fragment) n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A850BW17_9CHLR)

HSP 1 Score: 102 bits (255), Expect = 7.040e-25
Identity = 51/104 (49.04%), Postives = 70/104 (67.31%), Query Frame = 1 
Query:    1 GKTRVLTRRIAHLVRNVGAPAWSILAVTFTKKASEEMRARVRKTLGEDMSGQVALGTFHSICARLLRRHGDALPAVVPGLDSRFSIFDTEDSRRLLTDIIKEMG 312
            GKTRVLT+RIA+L+   G   W ILAVTFT KA++EM+ RV++ L +     + LGTFHSIC R+LRR  + LP     + S F IFDT+D  R++  +I+E+ 
Sbjct:   31 GKTRVLTQRIAYLIAEEGVRPWQILAVTFTNKAAKEMQERVKRLLPDQAIEGIMLGTFHSICGRILRREAEHLP-----IQSNFVIFDTDDQERVVKSVIRELN 129
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BLAST of mRNA_Ecto-sp13_S_contig16868.4910.1 vs. uniprot
Match: A0A1F3B8X6_9BACT (DNA helicase n=1 Tax=Armatimonadetes bacterium RBG_19FT_COMBO_69_19 TaxID=1797289 RepID=A0A1F3B8X6_9BACT)

HSP 1 Score: 107 bits (266), Expect = 9.340e-25
Identity = 55/106 (51.89%), Postives = 74/106 (69.81%), Query Frame = 1 
Query:    1 GKTRVLTRRIAHLVRNVGAPAWSILAVTFTKKASEEMRARVRKTLGEDMSGQVALGTFHSICARLLRRHGDALPAVVPGLDSRFSIFDTEDSRRLLTDIIKEMGQD 318
            GKTRVL  R+A L+R  G P   ILAVTFT KA+ EMR RV + +G  ++  + +GTFH IC+R+LRRHGD +     G+DSRF+IFD +D R L+  I+K++G D
Sbjct:   31 GKTRVLAYRVAWLMRERGVPPARILAVTFTNKAANEMRERVDRLIGAAVARGMWIGTFHHICSRILRRHGDRI-----GVDSRFAIFDDDDQRSLVRGILKDLGLD 131
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BLAST of mRNA_Ecto-sp13_S_contig16868.4910.1 vs. uniprot
Match: A0A399ZRF5_9CHLR (DNA helicase n=2 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A399ZRF5_9CHLR)

HSP 1 Score: 106 bits (265), Expect = 1.240e-24
Identity = 52/104 (50.00%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:    1 GKTRVLTRRIAHLVRNVGAPAWSILAVTFTKKASEEMRARVRKTLGEDMSGQVALGTFHSICARLLRRHGDALPAVVPGLDSRFSIFDTEDSRRLLTDIIKEMG 312
            GKTRVLT+RIA+L+   G   W ILAVTFT KA++EM+ RV+K L +  +  + LGTFHSICAR+LRR  + LP     ++S F IFD++D  R++ ++I+E+ 
Sbjct:   32 GKTRVLTQRIAYLIAEEGVRPWQILAVTFTNKAAKEMQERVKKLLPDQATEGIMLGTFHSICARILRREAEHLP-----IESNFVIFDSDDQERIVKNVIRELN 130
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BLAST of mRNA_Ecto-sp13_S_contig16868.4910.1 vs. uniprot
Match: UPI001AC7FDD8 (ATP-dependent DNA helicase PcrA n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=UPI001AC7FDD8)

HSP 1 Score: 106 bits (264), Expect = 1.690e-24
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:    1 GKTRVLTRRIAHLVRNVGAPAWSILAVTFTKKASEEMRARVRKTLGEDMSGQVALGTFHSICARLLRRHGDALPAVVPGLDSRFSIFDTEDSRRLLTDIIKEMG 312
            GKTRVL++RIA+L+ + G   W ILAVTFT KA++EM +RV+  L E  +  + LGTFHSICAR+LRR  D LP     L+S F IFD +D  R++  IIKE+ 
Sbjct:   31 GKTRVLSQRIAYLIDSEGVRPWQILAVTFTNKAAKEMDSRVKAMLNEQATEGMMLGTFHSICARILRRESDHLP-----LESNFVIFDADDQERIVKTIIKELN 129
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16868.4910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLP3_ECTSI3.750e-5997.17DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A6I7PMM4_9BACT1.620e-2657.55DNA helicase n=1 Tax=Phycisphaerales bacterium Tax... [more]
A0A399Z6V0_9CHLR6.950e-2651.89DNA helicase n=1 Tax=Anaerolineae bacterium TaxID=... [more]
A0A349BUE5_9FLAO1.420e-2551.89DNA helicase (Fragment) n=1 Tax=Flavobacteriaceae ... [more]
A0A3N5UTJ7_9CHLR1.420e-2551.92DNA helicase (Fragment) n=1 Tax=Chloroflexi bacter... [more]
A0A363U1S3_9CHLR2.700e-2552.88DNA helicase n=1 Tax=Anaerolineales bacterium TaxI... [more]
A0A850BW17_9CHLR7.040e-2549.04DNA helicase (Fragment) n=1 Tax=Anaerolineales bac... [more]
A0A1F3B8X6_9BACT9.340e-2551.89DNA helicase n=1 Tax=Armatimonadetes bacterium RBG... [more]
A0A399ZRF5_9CHLR1.240e-2450.00DNA helicase n=2 Tax=Anaerolineae bacterium TaxID=... [more]
UPI001AC7FDD81.690e-2452.88ATP-dependent DNA helicase PcrA n=1 Tax=Anaeroline... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16868contigEcto-sp13_S_contig16868:2410..3810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score205.7
Seed ortholog evalue1.1e-50
Seed eggNOG ortholog2880.D7FLP3
Model size318
KEGG koko:K03657
KEGG Pathwayko03420,ko03430,map03420,map03430
Hectar predicted targeting categorymitochondrion
Exons3
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG0210@1,KOG2108@2759
EC3.6.4.12
Cds size318
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462883.9844375-CDS-Ecto-sp13_S_contig16868:2409..25711681462883.9844375-CDS-Ecto-sp13_S_contig16868:2409..2571Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16868 2410..2571 -
1681462883.9984536-CDS-Ecto-sp13_S_contig16868:3228..33451681462883.9984536-CDS-Ecto-sp13_S_contig16868:3228..3345Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16868 3229..3345 -
1681462884.0071955-CDS-Ecto-sp13_S_contig16868:3771..38101681462884.0071955-CDS-Ecto-sp13_S_contig16868:3771..3810Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16868 3772..3810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16868.4910.1prot_Ecto-sp13_S_contig16868.4910.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16868 2410..3810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16868.4910.1

>prot_Ecto-sp13_S_contig16868.4910.1 ID=prot_Ecto-sp13_S_contig16868.4910.1|Name=mRNA_Ecto-sp13_S_contig16868.4910.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=106bp
GKTRVLTRRIAHLVRNVGAPAWSILAVTFTKKASEEMRARVRKTLGEDMS
GQVALGTFHSICARLLRRHGDALPAVVPGLDSRFSIFDTEDSRRLLTDII
KEMGQD
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mRNA from alignment at Ecto-sp13_S_contig16868:2410..3810-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16868.4910.1 ID=mRNA_Ecto-sp13_S_contig16868.4910.1|Name=mRNA_Ecto-sp13_S_contig16868.4910.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1401bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16868:2410..3810- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAAAGACGCGGGTGCTGACTCGAAGGATAGCGCACTTGGTGAGACCTAA
CAACGGGAAGAGGTGTAGCAATAGACTAGATGCTTGCGCTTGTATTGGTT
GAAGGATTGGAACAGGGATCATGCTACATACATGGTACCCATGGTACGTA
GCAATAGATGCTTGCTCAGTAAGCGCCTTTGGAAGACTGCAGTGTGCTGG
TGAGGGATCGGAACACGTCTGCTACACGCTACTGACAAAGTACCGCCTAC
GCCGCCGCCACAGCGATGATAGACGTGAAGGTTTGGTGCTTTCTGGAGCA
CACCAGTAGATACGGTCCCTACGCCCCCTCCTTTTTTGCCCCAATCCTAC
ACCAAACCAATACCTCACACGCCAACCCCTCCGCTCTCCCACCCCTGTTC
GGCGCGCTCGCACAAATGTTTTGTTTGTTGGACACGGGCTCGGGGCCCAT
ACCAACATCACAAAGGTGCGCAACGTCGGCGCGCCAGCTTGGTCGATCCT
GGCGGTAACGTTCACAAAGAAGGCCTCGGAGGAGATGAGGGCACGGGTGC
GCAAGACCTTAGGGGAGGACATGTCCGGCCAGGTAATTTGTTAACTGTGT
ACAGCGTATCCGCTATGCTACCAGTCAGCGATGACTTACTCTTCGAGGCG
TCCAGTTGCTATGTTCCAGCTTGAGCGAAAGCTTTTATGTATTTTGTATG
TCCTGCTGTCGTGCGTGTTCGGACAGCCTCTACTCAGCGATAAGAACGGC
TCCTTCGGTTATGCATAACCCAGGACCCTTCTCACTGCTGTCGGTGTGGA
ATTCGTGGTGTACACCTTTCCGTTGTCAGTGTGTGCGTGTGTCGTATTGT
TCTTTGTTCTGGGTTTTGTGGGGCTACACCTTTCTGTTGTCCGCACGTGT
GCGTGTGTCGTAGTGTCCTCTGTTCTGGATTTTGGGGGGCTACACCTCGT
GTGCGCGTGTCGTTTTTTCGTTGTTCTTGCTGTATATTTGTTCACCTTTC
TATTTCCTGTGCGTGTAAGTGTATCATCTTTCAGTAGTTCTGGGTGAAAG
TGTGCACACCTTTGTTGTCTGTTTTTGTGTCCGCGTTTCCCTTACTTGTG
TGGGTGTCGAGTCTCACCCCTTTCTGGGCACATTATAGTCCACATGGCCG
CATCAGCCGGGGCCACAAAGTACCGGGTTTTGATAGTTTCTGCAGTATTG
TGCGGCAAAGACGCCTCCGCTTGTTTTGCAACGTATCAGGTGGCCCTCGG
CACGTTCCACAGCATCTGCGCGCGACTCCTTCGCCGCCACGGGGACGCGC
TGCCGGCGGTTGTGCCAGGGCTCGACAGCAGGTTTTCCATCTTCGACACG
GAGGATTCTCGCAGGCTGCTCACGGACATCATCAAGGAGATGGGCCAAGA
C
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16868:2410..3810-

>mRNA_Ecto-sp13_S_contig16868.4910.1 ID=mRNA_Ecto-sp13_S_contig16868.4910.1|Name=mRNA_Ecto-sp13_S_contig16868.4910.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16868:2410..3810- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAAAGACGCGGGTGCTGACTCGAAGGATAGCGCACTTGGTGCGCAACGT
CGGCGCGCCAGCTTGGTCGATCCTGGCGGTAACGTTCACAAAGAAGGCCT
CGGAGGAGATGAGGGCACGGGTGCGCAAGACCTTAGGGGAGGACATGTCC
GGCCAGGTGGCCCTCGGCACGTTCCACAGCATCTGCGCGCGACTCCTTCG
CCGCCACGGGGACGCGCTGCCGGCGGTTGTGCCAGGGCTCGACAGCAGGT
TTTCCATCTTCGACACGGAGGATTCTCGCAGGCTGCTCACGGACATCATC
AAGGAGATGGGCCAAGAC
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