mRNA_Ecto-sp13_S_contig16864.4908.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16864.4908.1
Unique NamemRNA_Ecto-sp13_S_contig16864.4908.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16864.4908.1 vs. uniprot
Match: D8LL69_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL69_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 8.590e-53
Identity = 205/288 (71.18%), Postives = 207/288 (71.88%), Query Frame = 1 
Query:    1 MVEVGLPFALPQHYELDQVTKKIANVEGALDGTRNYHGITEQALLVQELISLRKKEEQIRELQLFLLKSFGAPAKQLGGGATAXXXXXXXXXXXXXXXXXXXXXXNLGSRNLHSNGNSSSNVRLQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGRVSTTA------------------------------------GGVPSSAWAGDVWRVMPCKVDGCKKRPSFGDVGDLKASYCGTHKV 756
            MVEVGLPFALPQHYELDQVTKKIANVEGALDGTRNYHGITEQALLVQELISLRKKEEQIRELQLFLLKSFGAP KQLGG    XXXXXXXXXXXXXXXXXXXXXX                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   XXX    XX    XXX   AG  S  A                                    GGVPSSAWAGDVWRVMPCKVDGCKKRPSFG VG+LKASYCGTHK+
Sbjct:    1 MVEVGLPFALPQHYELDQVTKKIANVEGALDGTRNYHGITEQALLVQELISLRKKEEQIRELQLFLLKSFGAPPKQLGGXXXXXXXXXXXXXXXXXXXXXXXXXX------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSDXXXFMDAXXSDSNXXXAATAGLPSPQAEGRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVPSSAWAGDVWRVMPCKVDGCKKRPSFGGVGELKASYCGTHKL 276
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16864.4908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LL69_ECTSI8.590e-5371.18EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16864contigEcto-sp13_S_contig16864:154..3427 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size756
Hectar predicted targeting categorymitochondrion
Exons4
Cds size576
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16864.4908.1prot_Ecto-sp13_S_contig16864.4908.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16864 243..2516 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462883.8591597-UTR-Ecto-sp13_S_contig16864:153..2421681462883.8591597-UTR-Ecto-sp13_S_contig16864:153..242Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16864 154..242 -
1681462883.9076087-UTR-Ecto-sp13_S_contig16864:2516..25531681462883.9076087-UTR-Ecto-sp13_S_contig16864:2516..2553Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16864 2517..2553 -
1681462883.9156644-UTR-Ecto-sp13_S_contig16864:3373..34271681462883.9156644-UTR-Ecto-sp13_S_contig16864:3373..3427Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16864 3374..3427 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462883.8738492-CDS-Ecto-sp13_S_contig16864:242..6971681462883.8738492-CDS-Ecto-sp13_S_contig16864:242..697Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16864 243..697 -
1681462883.88285-CDS-Ecto-sp13_S_contig16864:1647..17331681462883.88285-CDS-Ecto-sp13_S_contig16864:1647..1733Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16864 1648..1733 -
1681462883.8946323-CDS-Ecto-sp13_S_contig16864:2481..25161681462883.8946323-CDS-Ecto-sp13_S_contig16864:2481..2516Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16864 2482..2516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16864.4908.1

>prot_Ecto-sp13_S_contig16864.4908.1 ID=prot_Ecto-sp13_S_contig16864.4908.1|Name=mRNA_Ecto-sp13_S_contig16864.4908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=192bp
MAPATTTASPSRPFSSKSSFLCARRKSRSASCSCSFSRVSERRPSSSAGG
QRQPAPRRRPAFARAPPPPPPPPRLTSALETSTATATAVVTFGYRPPLQL
LLLLLLPEAAVAARGSAWRRRTLLPRHSVTAAAGVSAMTAVSWTPGGRTP
TTEGLPRRHRSRPPRAVAGPVGFPPPPAAYPRRRGPATCGA*
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mRNA from alignment at Ecto-sp13_S_contig16864:154..3427-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16864.4908.1 ID=mRNA_Ecto-sp13_S_contig16864.4908.1|Name=mRNA_Ecto-sp13_S_contig16864.4908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3274bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16864:154..3427- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTGAGGTGGGACTGCCGTTCGCTCTCCCGCAGCACTACGAATTGGA
TCAGGTGAACAAATTTCAGACTTTTGTACGCAACTTGCTGGATTTAGTCA
CGCCGCTTTCGTAGTCGAGGGTACCAACAGCAGTAGGTACCGACACGGTA
GGTACAATTAGAGAGCCCGCTCGGAGCTTCAAGGGTCTAGAGATACGATC
CACAATGCTAGACCTGGGAATCGCTGTGGAAAAATTCATGCGTTCCCCGT
ACGTACCGACAGCGCCGAAAGGCCTGCTTGTCGCATTTCATCTACAGATG
GGTGTATCATGTACAGCTGCTGTAGAGCACCGCTGCTTGTTGTAGTCGGG
GGAGCTGCCGACACCGCTAGATTTGGAAGGTAATCCGCATGTTTCCTGCA
ATGTTAGTATTCAGCGGACACCGCGAGCCGCCGTCAACATCCACAAGTGC
AACCGTACCCCTTAAAATCTGGAGTACCATGAGTGCCGCATGCATGAATT
TCCTTGCAACACTGCTCTGCTGTTGTCGCAACGTGTGAGTAATTTTGCCG
AAGGACTACACTTCTCGCGGTAAAAAGATCTCAGGCAGGAACCGCAGGAG
GGGGTCCAACCCCCCCCTCCTGTGTGACCCCGGTTGGATCGTCTCGCTAG
TACAAGTGGAGGATGGGGGCCAGAGGGGCAGACGACAGAGTCCAATGATG
GGAGGGAAAAAAAAAAAAAATGTAGTACAGACGAAGCTACTGGGCAGAGA
GAACGGAACGGCATTTAATGTGAAGACAACAACAACAACAACAACAACAA
CAACAACAGCAGCTACGACATTCTCGTCATGTATGGGGTCGGCCTCGCTA
TCCGCTGCTGCAATCACTGTGTAGGTGACAAAGAAGATCGCAAACGTGGA
AGGCGCTCTAGATGGCACCCGCAACTACCACGGCATCACCGAGCAGGTGA
GCGGCCTGCTGAGGAAACGGCGGGGGGTCCCGCGGGGGGGGGGGGGGGGG
AGGCAGCGTCCAATGTCGCCAACAACACCGTGCGAGACTATTCAGAAGCG
GGTGCACGATCTATGCTTGGTAGTGGTGGCGTGGTGGCGGTGGTGGTGCT
GTTGATTGTATCGCAGATGTCACTACTGGGTTTGCTGTTGCTGCTGCTCG
CGTCGTTGCTGGCGCACGCAGGGGGGCTGGTTCTTGTTGTTGATGTTGAT
GTTGGTGGCGATGTGGTGGTTGTTTGTTGTGGTTGGCTGTGCATGTTGTT
GTTCATGTTGTTGCTGATGTTAGTTGCCGCGATGTCATCGTTGTTGTTGG
TTGTTGCTGTGCATGTTGCTGTGTAATTGTTCATGCTAGGTTGCTGATGC
TGGTGGGTGCAGCAGATTCGCTGATGTTGTTGCTGGTGTTGACGTGCTCC
TCTTTGTTGTTGCTGCTCGTGTTGTTGCTAACGCTGGTGGGTGCGGTGTC
GTTGTTGCTGATTATTGCTGTACATGGTTGCTGTTGTTGTTCATGCTAAG
CTGCTGATGCTGGTGGGTGCAGCATCGTTGACGTGGTTGCCGGTGTTGGC
GTAATCCTCGTCTACTGTTGCTGCTCTCATGTTGTTGCTAACGCTGTTGG
GTGCGGCCGTCCCGACCGACGCCCACCCACCCCGACACACAAGAAGCCGA
TCCCCACAGCACCGCGCCCCCGTGGTTGGTCTTGACGTGTGCAGGCCCTT
CTCGTCCAAGAGCTCATTTCTCTGCGCAAGAAGGAAGAGCAGATCCGCGA
GCTGCAGCTGTTCCTTCTCAAGAGTTTCGGGTGAGCGGGTGGTGCGTACA
CACGAGGTTGTGGATTGCAGACACGAGCAGCAGCGCCCGCCTATGTCCTG
GAGTTGCTCGTTGAACTGTATGGTGGCGCACCCAGAGGGAAGTGCGTGGA
CTCGGCAGTAACTCGAAGGACTTGACCCCCCAGACACGAGCTCTTCCGTA
CAGCAGTAGCAGCACGAAAAGATCTGTATACATGGGCGGGACAACCAAAG
TAGAGTTTCCGAGATGTGTTCAGAGAAATTCTGTGTTTCGCACCGATTCC
CGGGCGGACAGACACCATTGGGAGCTCCCTGGCTTTCGCAGGCGACTCTG
TAAACATGATCGATGCGGCAAAGGTTCCGCCACCTACGGTACAACGCATG
CCTCATGAGACACAAGATATGCTCACCCTGGTGACAACATTGTTGCTTCT
ATGCACACAAGAACTGTCACCCGGTGCACTACCGTCGTATGGGGCGTATT
TGTGATGTATTTTGTCGCCCTATTAGGTGACCTGAGAGTAGTTTAGTCAG
TACAAGTATTTCAACCTGGTGTGGTATTGTAGTTTGTGTTGCATACCATC
TTGTATGGGGGTGTTATGTTGGCCCACATACAAAAAAGGTTGCGAGTCAG
CGCACAGCGTGCGATCGATTTTCGCAGAGTGATTTCTCCTCAACCAGAAG
GGTGCGAGCGCCAACTGATACTTCTCAGGAAAGAACTCGACAAGATGTTT
CCAAAACCGTCCTTTTCGACAATGGTAACCTCCTGGTTTTACGCTTTGAA
AATCGCTCGCACCCATGTGCGCTGACTCGCAACCTTACGGTACGATCTAC
AAGAAGTCCAGTCCGCGTCTCGCCGACGGCGTCAACACCCGACCATCCCT
TGCCCTCGTTGTGTCTCCTCCTCCTCACCGGACCTGACGACGCGCGGTAA
CGGCAATGACGAAAAAACGCCCTTTGGCAGAGCGCCGGCCAAGCAGCTCG
GCGGGGGGGCAACGGCAGCCGGCTCCGCGACGGCGGCCAGCCTTCGCGAG
AGCACCGCCGCCGCCGCCTCCGCCGCCGCGGCTAACCTCGGCTCTCGAAA
CCTCCACAGCAACGGCAACAGCAGTAGTAACGTTCGGTTACAGGCCGCCG
CTGCAGCTGCTGCTGCTGCTGCTGCTGCCGGAAGCGGCGGTGGCGGCAAG
AGGAAGCGCGTGGCGCCGCCGTACTCTCCTTCCACGCCACAGCGTGACGG
CGGCGGCGGGGGTTTCAGCGATGACGGCGGTTTCATGGACGCCGGGGGGT
CGGACTCCAACGACGGAGGGGCTGCCACGGCGGCACCGGAGCCGTCCCCC
TCGGGCGGTGGCGGGGCCGGTAGGGTTTCCACCACCGCCGGCGGCGTACC
CTCGTCGGCGTGGGCCGGCGACGTGTGGCGCGTGATGCCGTGCAAGGTGG
ACGGGTGCAAGAAGAGGCCCAGCTTCGGGGACGTGGGGGACCTCAAGGCT
TCGTACTGCGGGACCCACAAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16864:154..3427-

>mRNA_Ecto-sp13_S_contig16864.4908.1 ID=mRNA_Ecto-sp13_S_contig16864.4908.1|Name=mRNA_Ecto-sp13_S_contig16864.4908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=576bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16864:154..3427- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACCCGCAACTACCACGGCATCACCGAGCAGGCCCTTCTCGTCCAA
GAGCTCATTTCTCTGCGCAAGAAGGAAGAGCAGATCCGCGAGCTGCAGCT
GTTCCTTCTCAAGAGTTTCGGAGCGCCGGCCAAGCAGCTCGGCGGGGGGG
CAACGGCAGCCGGCTCCGCGACGGCGGCCAGCCTTCGCGAGAGCACCGCC
GCCGCCGCCTCCGCCGCCGCGGCTAACCTCGGCTCTCGAAACCTCCACAG
CAACGGCAACAGCAGTAGTAACGTTCGGTTACAGGCCGCCGCTGCAGCTG
CTGCTGCTGCTGCTGCTGCCGGAAGCGGCGGTGGCGGCAAGAGGAAGCGC
GTGGCGCCGCCGTACTCTCCTTCCACGCCACAGCGTGACGGCGGCGGCGG
GGGTTTCAGCGATGACGGCGGTTTCATGGACGCCGGGGGGTCGGACTCCA
ACGACGGAGGGGCTGCCACGGCGGCACCGGAGCCGTCCCCCTCGGGCGGT
GGCGGGGCCGGTAGGGTTTCCACCACCGCCGGCGGCGTACCCTCGTCGGC
GTGGGCCGGCGACGTGTGGCGCGTGA
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