mRNA_Ecto-sp13_S_contig16863.4907.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16863.4907.1
Unique NamemRNA_Ecto-sp13_S_contig16863.4907.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16863.4907.1 vs. uniprot
Match: A0A6H5JW11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW11_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 9.580e-39
Identity = 75/94 (79.79%), Postives = 79/94 (84.04%), Query Frame = 1 
Query:    1 ENESTWADKP--APVPVLHAAYFPVRELFDRCRRALSALPAERQPSAANPKTPGDRSPVGNSERSTCPAPPSPSTAYGVADDEGRMRNGYCTHW 276
            ENESTWADKP  +PV VLHAAYFPV EL DRCRRALSALPA RQPSAANP+TPGD S VG SERSTCPAPPSPSTA G+ADDEG+   GY  HW
Sbjct:  455 ENESTWADKPGESPVSVLHAAYFPVHELLDRCRRALSALPAARQPSAANPRTPGDGSLVGKSERSTCPAPPSPSTADGIADDEGK-NIGYSAHW 547
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16863.4907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JW11_9PHAE9.580e-3979.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16863contigEcto-sp13_S_contig16863:1285..2060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size277
Hectar predicted targeting categoryother localisation
Exons2
Cds size276
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462883.804932-CDS-Ecto-sp13_S_contig16863:1284..15291681462883.804932-CDS-Ecto-sp13_S_contig16863:1284..1529Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16863 1285..1529 -
1681462883.819917-CDS-Ecto-sp13_S_contig16863:2029..20601681462883.819917-CDS-Ecto-sp13_S_contig16863:2029..2060Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16863 2030..2060 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16863.4907.1prot_Ecto-sp13_S_contig16863.4907.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16863 1285..2060 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16863.4907.1

>prot_Ecto-sp13_S_contig16863.4907.1 ID=prot_Ecto-sp13_S_contig16863.4907.1|Name=mRNA_Ecto-sp13_S_contig16863.4907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
ENESTWADKPAPVPVLHAAYFPVRELFDRCRRALSALPAERQPSAANPKT
PGDRSPVGNSERSTCPAPPSPSTAYGVADDEGRMRNGYCTHW
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mRNA from alignment at Ecto-sp13_S_contig16863:1285..2060-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16863.4907.1 ID=mRNA_Ecto-sp13_S_contig16863.4907.1|Name=mRNA_Ecto-sp13_S_contig16863.4907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=776bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16863:1285..2060- (Ectocarpus species13 EcNAP12_S_4_19m)
GAAAATGAGAGCACCTGGGCGGACAAGCCAGGCGAGTGTTCACGCCGTTC
AAGTCCACCTGATGATATCGAGAGTGCTTTGCTGGGTTATTTCTACCTCT
TGGCAGGTGCACCGGGGTCTTAAACTCTTCGTTCGGGTCACAACCTTCGA
AAAGTGATGCGTGTGCTCTGATTGCTTTGTGTTTGGGTTCGATTACACGT
GTGTCGTTCGAGCAGATTGGTGACCCGGAGTGGAAGTAGGAAACTGGAAC
AGTTTTGTGCCATCCATTACTTGCCTCGACGGGTTGCATCCACCAGCTTT
TCGTTTGTGCCCATGCATCGGGAGCAACCCTCGCCCAGGATCACATTGTT
GTAGTGGACCGCAGTTGCAGCAAGGAGTTGAGCTTTTTTCGTGTAGGATG
ATGCGGGAATCCACGGTTTCGGGCGAACATCGTTGTGTAAAGTGCTCCGC
CCAAATTGTTGTATCTTCGGCCGATCGTCAACTAATGCCTCCGCCGAACT
CCCGTCGTTGATTACCATCTTTCCGTCACAGCCCCTGTGCCGGTGCTCCA
CGCCGCCTACTTTCCTGTGCGCGAGCTTTTTGATCGCTGCCGCCGTGCGC
TCTCCGCGCTACCGGCAGAACGGCAACCTTCGGCCGCGAATCCAAAAACT
CCAGGCGATCGCTCCCCCGTCGGAAACAGTGAACGAAGCACCTGCCCGGC
TCCCCCGTCCCCTTCTACGGCCTATGGTGTTGCCGACGACGAAGGCAGGA
TGCGGAACGGGTACTGTACACACTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16863:1285..2060-

>mRNA_Ecto-sp13_S_contig16863.4907.1 ID=mRNA_Ecto-sp13_S_contig16863.4907.1|Name=mRNA_Ecto-sp13_S_contig16863.4907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16863:1285..2060- (Ectocarpus species13 EcNAP12_S_4_19m)
GAAAATGAGAGCACCTGGGCGGACAAGCCAGCCCCTGTGCCGGTGCTCCA
CGCCGCCTACTTTCCTGTGCGCGAGCTTTTTGATCGCTGCCGCCGTGCGC
TCTCCGCGCTACCGGCAGAACGGCAACCTTCGGCCGCGAATCCAAAAACT
CCAGGCGATCGCTCCCCCGTCGGAAACAGTGAACGAAGCACCTGCCCGGC
TCCCCCGTCCCCTTCTACGGCCTATGGTGTTGCCGACGACGAAGGCAGGA
TGCGGAACGGGTACTGTACACACTGG
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