mRNA_Ecto-sp13_S_contig16863.4906.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16863.4906.1
Unique NamemRNA_Ecto-sp13_S_contig16863.4906.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16863.4906.1 vs. uniprot
Match: A0A6H5JW11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW11_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 2.190e-53
Identity = 98/114 (85.96%), Postives = 103/114 (90.35%), Query Frame = -3 
Query:  140 PPGGVLNRCSSGGAERDDAAKDPASETAPLMEMMGLEDLERLLGEDASSSLAAPGGNTSVPSGIAAGAVRESGLREVGRPSEEDGDGGRAWEVVEAWTPCAIGTLPGSSAARLY 481
            PPG VLN CSSGGAER DAAK PASETAPL+ MMGL+DLERLLG DASSSLAAPGG TSVPS IAAGAVRESG REVGRPSE +GD GRAWE+VEAWTPCAIGTLPGSSAARL+
Sbjct:  629 PPGEVLNHCSSGGAERGDAAKGPASETAPLLAMMGLDDLERLLGGDASSSLAAPGGYTSVPSSIAAGAVRESGFREVGRPSEVNGDTGRAWELVEAWTPCAIGTLPGSSAARLH 742
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16863.4906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JW11_9PHAE2.190e-5385.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16863contigEcto-sp13_S_contig16863:561..1043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size485
Hectar predicted targeting categoryother localisation
Exons1
Cds size483
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462883.7666268-CDS-Ecto-sp13_S_contig16863:560..10431681462883.7666268-CDS-Ecto-sp13_S_contig16863:560..1043Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16863 561..1043 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16863.4906.1prot_Ecto-sp13_S_contig16863.4906.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16863 561..1043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16863.4906.1

>prot_Ecto-sp13_S_contig16863.4906.1 ID=prot_Ecto-sp13_S_contig16863.4906.1|Name=mRNA_Ecto-sp13_S_contig16863.4906.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp
DFRWSKRPLQAPCHQTLNWPKFLVHGKDDRASNLVMPQTPPTRKSLSKGG
RQTTPAASLSRTASKPRPLPTHGHHLHLLHWAVQPPSTPTPAPHQRLCPM
VHWYSPREPQARKTHLRQASVPGPPGPSSPSVALFPKQGPLQHHPAQPRR
CYNDSARHQGA
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mRNA from alignment at Ecto-sp13_S_contig16863:561..1043+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16863.4906.1 ID=mRNA_Ecto-sp13_S_contig16863.4906.1|Name=mRNA_Ecto-sp13_S_contig16863.4906.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16863:561..1043+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATTTTCGCTGGAGCAAGCGGCCGCTTCAGGCTCCCTGTCACCAGACTCT
AAACTGGCCCAAATTCTTAGTTCATGGAAAAGACGATCGTGCCTCGAACC
TCGTGATGCCACAGACCCCCCCCACACGAAAATCGCTCAGTAAAGGCGGG
CGGCAGACGACCCCGGCAGCGTCCCTATCGCGCACGGCGTCCAAGCCTCG
ACCACTTCCCACGCACGGCCACCATCTCCATCTTCTTCACTGGGCCGTCC
AACCTCCCTCAACCCCGACTCCCGCACCGCACCAGCGGCTATGCCCGATG
GTACACTGGTATTCCCCCCGGGAGCCGCAAGCGAGGAAGACGCATCTTCG
CCAAGCAAGCGTTCCAGGTCCTCCAGGCCCATCATCTCCATCAGTGGCGC
TGTTTCCGAAGCAGGGTCCTTTGCAGCATCATCCCGCTCAGCCCCGCCGC
TGCTACAACGATTCAGCACGCCACCAGGGGGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16863:561..1043+

>mRNA_Ecto-sp13_S_contig16863.4906.1 ID=mRNA_Ecto-sp13_S_contig16863.4906.1|Name=mRNA_Ecto-sp13_S_contig16863.4906.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16863:561..1043+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATTTTCGCTGGAGCAAGCGGCCGCTTCAGGCTCCCTGTCACCAGACTCT
AAACTGGCCCAAATTCTTAGTTCATGGAAAAGACGATCGTGCCTCGAACC
TCGTGATGCCACAGACCCCCCCCACACGAAAATCGCTCAGTAAAGGCGGG
CGGCAGACGACCCCGGCAGCGTCCCTATCGCGCACGGCGTCCAAGCCTCG
ACCACTTCCCACGCACGGCCACCATCTCCATCTTCTTCACTGGGCCGTCC
AACCTCCCTCAACCCCGACTCCCGCACCGCACCAGCGGCTATGCCCGATG
GTACACTGGTATTCCCCCCGGGAGCCGCAAGCGAGGAAGACGCATCTTCG
CCAAGCAAGCGTTCCAGGTCCTCCAGGCCCATCATCTCCATCAGTGGCGC
TGTTTCCGAAGCAGGGTCCTTTGCAGCATCATCCCGCTCAGCCCCGCCGC
TGCTACAACGATTCAGCACGCCACCAGGGGGCC
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