mRNA_Ecto-sp13_S_contig1686.4904.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1686.4904.1
Unique NamemRNA_Ecto-sp13_S_contig1686.4904.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1686.4904.1 vs. uniprot
Match: D7G947_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G947_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 1.490e-56
Identity = 126/155 (81.29%), Postives = 129/155 (83.23%), Query Frame = 1 
Query:    1 MPPPPDASAFLTPR-QPAAGMLPFGSPADRGSNFFQGGDGDDETGGNHDGTCGTTGGXXXXXXXEGSRGG-FKRGFKRMLHGVPSPSHFRRSMSFQGSMSAISSAANRVATGAMTPIRRRRXXXXXXXXXXXXXXDG----DATPGTCPTRDDGF 447
            MPPPPDASAFLTPR QPAAGMLPFGSP DRGSNFF+GGDG DETG N DGT GT   XXXXXXX       FKRGFKRMLHGVPSPSHFRRSMSFQGS++AISSAANRVATGAMTPIRRRR XXXXXXXX   XXD     DATPGT PTRDDGF
Sbjct:    1 MPPPPDASAFLTPRRQPAAGMLPFGSPDDRGSNFFEGGDGHDETGENLDGTGGTXXXXXXXXXXXXXXXXXFKRGFKRMLHGVPSPSHFRRSMSFQGSLTAISSAANRVATGAMTPIRRRREXXXXXXXXAGAXXDXXXXXDATPGTSPTRDDGF 155
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BLAST of mRNA_Ecto-sp13_S_contig1686.4904.1 vs. uniprot
Match: A0A6H5KGA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGA5_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 6.060e-51
Identity = 126/141 (89.36%), Postives = 129/141 (91.49%), Query Frame = 1 
Query:    1 MPPPPDASAFLTPRQPAAGMLPFGSPADRGSNFFQGGDGDDETGGNHDGTCGTTGGXXXXXXX-EGSRGGFKRGFKRMLHGVPSPSHFRRSMSFQGSMSAISSAANRVATGAMTPIRRRRXXXXXXXXXXXXXXDGDATPG 420
            MPPPPDASAFLTPRQPAAGMLPFGSP DRGSNFF+GGD DD TG NHDGT GT   XXXXXXX +GSRG FKRGFKRMLHGVPSPSHFRRSMSFQGS+SAISSAANRVATGAMTPIRRRRXXXXXXXXXXXXXX  DATPG
Sbjct:    1 MPPPPDASAFLTPRQPAAGMLPFGSPDDRGSNFFEGGD-DDGTGENHDGTGGTXXXXXXXXXXXDGSRGNFKRGFKRMLHGVPSPSHFRRSMSFQGSLSAISSAANRVATGAMTPIRRRRXXXXXXXXXXXXXXXXDATPG 140
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1686.4904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G947_ECTSI1.490e-5681.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGA5_9PHAE6.060e-5189.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1686contigEcto-sp13_S_contig1686:10330..11273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size450
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_011240.1
Cds size450
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462883.7259958-CDS-Ecto-sp13_S_contig1686:10329..103611681462883.7259958-CDS-Ecto-sp13_S_contig1686:10329..10361Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1686 10330..10361 -
1681462883.7351325-CDS-Ecto-sp13_S_contig1686:10855..112731681462883.7351325-CDS-Ecto-sp13_S_contig1686:10855..11273Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1686 10856..11273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1686.4904.1prot_Ecto-sp13_S_contig1686.4904.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1686 10330..11273 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1686.4904.1

>prot_Ecto-sp13_S_contig1686.4904.1 ID=prot_Ecto-sp13_S_contig1686.4904.1|Name=mRNA_Ecto-sp13_S_contig1686.4904.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=150bp
MPPPPDASAFLTPRQPAAGMLPFGSPADRGSNFFQGGDGDDETGGNHDGT
CGTTGGGGGGGDGEGSRGGFKRGFKRMLHGVPSPSHFRRSMSFQGSMSAI
SSAANRVATGAMTPIRRRRERREGRKGRAGAGGDGDATPGTCPTRDDGF*
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mRNA from alignment at Ecto-sp13_S_contig1686:10330..11273-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1686.4904.1 ID=mRNA_Ecto-sp13_S_contig1686.4904.1|Name=mRNA_Ecto-sp13_S_contig1686.4904.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=944bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1686:10330..11273- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGCCTCCCCCGGACGCCTCGGCGTTCTTGACCCCCCGCCAACCCGC
CGCCGGGATGCTGCCGTTCGGAAGCCCCGCCGACCGTGGGAGCAATTTCT
TTCAGGGCGGCGACGGTGATGACGAAACGGGCGGGAATCACGACGGAACC
TGCGGGACCACGGGCGGCGGCGGGGGCGGGGGTGATGGTGAAGGCAGCAG
GGGGGGATTCAAACGCGGCTTCAAGCGTATGCTTCACGGCGTGCCGAGCC
CGTCTCACTTCCGGAGGTCGATGTCGTTCCAGGGCTCCATGTCGGCTATC
TCCAGCGCCGCGAACAGGGTCGCAACCGGGGCGATGACCCCTATCCGTCG
ACGCCGGGAGCGACGGGAAGGCAGGAAGGGAAGGGCGGGGGCGGGCGGCG
ACGGCGACGCAACCCCAGGTGGGGGCAACGCGGCGACCGCCCGGAGCGGG
AGAGGAAGCAGCTCGAGACATCGCTCTAGCCGCCGCAGTGGCGGTAGTGC
AGCAGCGTCTGCTGCTGCGGCTGATGATGATCATGATGATGATGGTGATG
ATGGTGATGGTGATGATGGTGGCGATGGTGACGATGCGAGCTTCTCTGCG
AAAGAGGACGGGCCTCGTTCTTCAAGCGGTAAGACGCACAAGAGAGGACG
ACCTGGTCCGCCCGGGGTTGGAGGAGACGGTAGCTCGCCGGGTGGGGGGA
CTCCGGGCGATGCCCCCGAGCAGTTGGCTTCGACGATGCCGCTGCCCCAG
GAAAGGACCGGCGGCGGTAGCGGCGGCCGCGGAGGCCGAAGGTGCAGCGG
CGGCAAGCGGTCGTCCTCCGCGAGCCGTGAGAACGGCTCGTCGGTTCCGA
GGAGCGGCATCAGGACGGCATCGTCGCCATCCTCCTTCTCGGTTTCGGCG
GCCGTGACCCAGGGACATGCCCGACGCGCGACGACGGGTTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1686:10330..11273-

>mRNA_Ecto-sp13_S_contig1686.4904.1 ID=mRNA_Ecto-sp13_S_contig1686.4904.1|Name=mRNA_Ecto-sp13_S_contig1686.4904.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=450bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1686:10330..11273- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGCCTCCCCCGGACGCCTCGGCGTTCTTGACCCCCCGCCAACCCGC
CGCCGGGATGCTGCCGTTCGGAAGCCCCGCCGACCGTGGGAGCAATTTCT
TTCAGGGCGGCGACGGTGATGACGAAACGGGCGGGAATCACGACGGAACC
TGCGGGACCACGGGCGGCGGCGGGGGCGGGGGTGATGGTGAAGGCAGCAG
GGGGGGATTCAAACGCGGCTTCAAGCGTATGCTTCACGGCGTGCCGAGCC
CGTCTCACTTCCGGAGGTCGATGTCGTTCCAGGGCTCCATGTCGGCTATC
TCCAGCGCCGCGAACAGGGTCGCAACCGGGGCGATGACCCCTATCCGTCG
ACGCCGGGAGCGACGGGAAGGCAGGAAGGGAAGGGCGGGGGCGGGCGGCG
ACGGCGACGCAACCCCAGGGACATGCCCGACGCGCGACGACGGGTTCTGA
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