mRNA_Ecto-sp13_S_contig1686.4905.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1686.4905.1
Unique NamemRNA_Ecto-sp13_S_contig1686.4905.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1686.4905.1 vs. uniprot
Match: A0A6H5KGA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGA5_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 5.220e-5
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = -3 
Query:  101 ASFSAKEDGPRSSSGKTHKRGRPGPPGVGGDG 196
            ASFSAKEDGPRS+SGK HKRGR GPPGV G G
Sbjct:  191 ASFSAKEDGPRSASGKAHKRGRTGPPGVRGGG 222
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1686.4905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KGA5_9PHAE5.220e-584.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1686contigEcto-sp13_S_contig1686:10493..10936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size445
Hectar predicted targeting categoryother localisation
Exons1
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462883.5988483-CDS-Ecto-sp13_S_contig1686:10492..107981681462883.5988483-CDS-Ecto-sp13_S_contig1686:10492..10798Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1686 10493..10798 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462883.6071098-UTR-Ecto-sp13_S_contig1686:10798..109361681462883.6071098-UTR-Ecto-sp13_S_contig1686:10798..10936Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1686 10799..10936 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1686.4905.1prot_Ecto-sp13_S_contig1686.4905.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1686 10493..10798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1686.4905.1

>prot_Ecto-sp13_S_contig1686.4905.1 ID=prot_Ecto-sp13_S_contig1686.4905.1|Name=mRNA_Ecto-sp13_S_contig1686.4905.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
RGRRYRRRSFPGAAASSKPTARGHRPESPHPASYRLLQPRADQVVLSCAS
YRLKNEARPLSQRSSHRHHRHHHHHHHHHHHHHDHHQPQQQTLLHYRHCG
G*
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mRNA from alignment at Ecto-sp13_S_contig1686:10493..10936+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1686.4905.1 ID=mRNA_Ecto-sp13_S_contig1686.4905.1|Name=mRNA_Ecto-sp13_S_contig1686.4905.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1686:10493..10936+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCGGCCGCCGCTACCGCCGCCGGTCCTTTCCTGGGGCAGCGGCATCGTC
GAAGCCAACTGCTCGGGGGCATCGCCCGGAGTCCCCCCACCCGGCGAGCT
ACCGTCTCCTCCAACCCCGGGCGGACCAGGTCGTCCTCTCTTGTGCGTCT
TACCGCTTGAAGAACGAGGCCCGTCCTCTTTCGCAGAGAAGCTCGCATCG
TCACCATCGCCACCATCATCACCATCACCATCATCACCATCATCATCATG
ATCATCATCAGCCGCAGCAGCAGACGCTGCTGCACTACCGCCACTGCGGC
GGCTAGAGCGATGTCTCGAGCTGCTTCCTCTCCCGCTCCGGGCGGTCGCC
GCGTTGCCCCCACCTGGGGTTGCGTCGCCGTCGCCGCCCGCCCCCGCCCT
TCCCTTCCTGCCTTCCCGTCGCTCCCGGCGTCGACGGATAGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1686:10493..10936+

>mRNA_Ecto-sp13_S_contig1686.4905.1 ID=mRNA_Ecto-sp13_S_contig1686.4905.1|Name=mRNA_Ecto-sp13_S_contig1686.4905.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1686:10493..10936+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCGGCCGCCGCTACCGCCGCCGGTCCTTTCCTGGGGCAGCGGCATCGTC
GAAGCCAACTGCTCGGGGGCATCGCCCGGAGTCCCCCCACCCGGCGAGCT
ACCGTCTCCTCCAACCCCGGGCGGACCAGGTCGTCCTCTCTTGTGCGTCT
TACCGCTTGAAGAACGAGGCCCGTCCTCTTTCGCAGAGAAGCTCGCATCG
TCACCATCGCCACCATCATCACCATCACCATCATCACCATCATCATCATG
ATCATCATCAGCCGCAGCAGCAGACGCTGCTGCACTACCGCCACTGCGGC
GGCTAG
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