mRNA_Ecto-sp13_S_contig16840.4894.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16840.4894.1
Unique NamemRNA_Ecto-sp13_S_contig16840.4894.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16840.4894.1 vs. uniprot
Match: D8LNJ7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNJ7_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 5.180e-65
Identity = 101/107 (94.39%), Postives = 104/107 (97.20%), Query Frame = 1 
Query:    1 LGLWERISQYQDGESGSDFWNGDVAAAEGHLSLMISKHAEGDPLSYTHLGLSRAAKNGRMDVVRWMHDYTDVPQMPSAMDSAAAGGHLKIVKFLEEHRGEGNCTRFA 321
            LGLWERI Q QDGESGSDFWNGDVAAAEGHLSLMISKHAE DPLSYTHLGLSRAAKNGRMDVVRW+HDYTDVPQ+PSAMDSAAAGGHL+IVKFLEEHRGEGNCTRFA
Sbjct:  117 LGLWERIGQCQDGESGSDFWNGDVAAAEGHLSLMISKHAERDPLSYTHLGLSRAAKNGRMDVVRWLHDYTDVPQIPSAMDSAAAGGHLEIVKFLEEHRGEGNCTRFA 223
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BLAST of mRNA_Ecto-sp13_S_contig16840.4894.1 vs. uniprot
Match: A0A835ZD33_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD33_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.860e-13
Identity = 41/110 (37.27%), Postives = 59/110 (53.64%), Query Frame = 1 
Query:    7 LWERISQYQDGESGSDFWNGDVAAAEGHLSLMISKHAEGDPLSYTHLGLSRAAKNGRMDVVRWMHDYT-----DVPQMPSAMDSAAAGGHLKIVKFLEEHRGEGNCTRFA 321
            LW R++ +QDG   +D+WNGD A+  GHLS +  K +   PLS+THL ++ AA+ G M VV  +H+ +     D     +AMD                HR EG C++FA
Sbjct:   20 LWSRLTAFQDGVRFTDYWNGDHASVCGHLSFIKLKESIASPLSFTHLSINGAAREGHMAVVVHLHERSKGRPGDPSATVAAMDXXXXXXXXXXXXXXXXHRSEG-CSKFA 128
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BLAST of mRNA_Ecto-sp13_S_contig16840.4894.1 vs. uniprot
Match: A0A6G0X6S6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X6S6_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.870e-7
Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:   67 DVAAAEGHLSLMISKHAEGDPLSYTHLGLSRAAKNGRMDVVRWMH--DYTDVPQMPS--AMDSAAAGGHLKIVKFLE 285
            D   A G+L+L+   H       +T  G +RAA NG +DVVRW+H  D T  P++ S   MD AA  GHL+IV+FL+
Sbjct:  270 DEIIALGNLALLEKMHIRSKWPGFTSNGPARAAANGDVDVVRWLHSLDETHSPKLWSKWTMDQAAGHGHLEIVQFLQ 346
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BLAST of mRNA_Ecto-sp13_S_contig16840.4894.1 vs. uniprot
Match: A0A6G0XSY4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XSY4_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 3.050e-6
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:  151 LSRAAKNGRMDVVRWMH-DYTDVPQMPSAMDSAAAGGHLKIVKFLEEHRGE 300
            +  AA +GRMD+V W+  ++  V     AMD AAAGGHL+IVKFL  HR E
Sbjct:   34 MDAAAADGRMDLVTWLQQNHAHVGCTTDAMDFAAAGGHLEIVKFLHRHRTE 84
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BLAST of mRNA_Ecto-sp13_S_contig16840.4894.1 vs. uniprot
Match: A0A2D4BNH0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNH0_PYTIN)

HSP 1 Score: 54.3 bits (129), Expect = 4.340e-6
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:  157 RAAKNGRMDVVRWMHDYTDVPQMPSA--MDSAAAGGHLKIVKFLEEHRGEGNCTRFAMNGA 333
            RAA+ G +++V+W+H     P   SA  MD AAAGG L +V+FL EHR EG CT  A+NGA
Sbjct:  203 RAAELGDLEMVQWIHAQR-APHAFSAHAMDGAAAGGFLDVVRFLHEHRTEG-CTAQAINGA 261
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BLAST of mRNA_Ecto-sp13_S_contig16840.4894.1 vs. uniprot
Match: K3WP39_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WP39_GLOUD)

HSP 1 Score: 52.0 bits (123), Expect = 1.390e-5
Identity = 35/88 (39.77%), Postives = 47/88 (53.41%), Query Frame = 1 
Query:   73 AAAEGHLSLMISKHAEGDPLSYTHLGLSRAAKNGRMDVVR-WMHDYTDVPQMPSAMDSAAAGGHLKIVKFLEEHRGEGNCTRFAMNGA 333
            AA  GHL ++   H        T   +  AAK+G +D+V  +M   T V Q    MD AA GGH  +VK+  E+R EG CT +A+N A
Sbjct:    4 AAENGHLHVVKWLHENRSQQQPTK-AMDTAAKSGYLDIVNGYMRIVTKVAQ--HTMDQAAGGGHFDVVKWFHENRDEG-CTWYAINSA 87
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BLAST of mRNA_Ecto-sp13_S_contig16840.4894.1 vs. uniprot
Match: A0A835YRY1_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRY1_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 2.440e-5
Identity = 36/117 (30.77%), Postives = 59/117 (50.43%), Query Frame = 1 
Query:    4 GLWERISQYQDGESGSDFWN--GDVAAAEGHLSLMISKHAEGDPLSYTHLGLSRAAKNGRMDV-----VRWMHDYTDVPQMPSAMDSAAAGGHLKIVKFLEEHRGEGNCTRFAMNGA 333
            GL   +  +Q G  G+D+ +  GD   + GHLSL++ K  +  PL+ T   L  AA  G + +     VR +     +  + SA ++AA  GHL ++++L    G    T +A+ GA
Sbjct:   75 GLLLHLCSFQGGRRGADWGSKHGDDCVSSGHLSLLLLKEQDQQPLTITSKALETAAAAGDLPLLQHLCVRLLPQGAALEVLQSAFNAAALHGHLHVLRWLHSELGTQG-TGWAVEGA 190
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16840.4894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LNJ7_ECTSI5.180e-6594.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZD33_9STRA2.860e-1337.27Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A6G0X6S6_9STRA1.870e-744.16Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6G0XSY4_9STRA3.050e-652.94Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A2D4BNH0_PYTIN4.340e-652.46Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
K3WP39_GLOUD1.390e-539.77Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A835YRY1_9STRA2.440e-530.77Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16840contigEcto-sp13_S_contig16840:718..2753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score214.5
Seed ortholog evalue2.6e-53
Seed eggNOG ortholog2880.D8LNJ7
Model size355
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
Cds size354
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462882.8623075-CDS-Ecto-sp13_S_contig16840:718..8051681462882.8623075-CDS-Ecto-sp13_S_contig16840:718..805Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16840 719..805 -
1681462882.8823206-CDS-Ecto-sp13_S_contig16840:2486..27531681462882.8823206-CDS-Ecto-sp13_S_contig16840:2486..2753Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16840 2487..2753 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16840.4894.1prot_Ecto-sp13_S_contig16840.4894.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16840 719..2753 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16840.4894.1

>prot_Ecto-sp13_S_contig16840.4894.1 ID=prot_Ecto-sp13_S_contig16840.4894.1|Name=mRNA_Ecto-sp13_S_contig16840.4894.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=118bp
LGLWERISQYQDGESGSDFWNGDVAAAEGHLSLMISKHAEGDPLSYTHLG
LSRAAKNGRMDVVRWMHDYTDVPQMPSAMDSAAAGGHLKIVKFLEEHRGE
GNCTRFAMNGAAAAGNME
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mRNA from alignment at Ecto-sp13_S_contig16840:718..2753-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16840.4894.1 ID=mRNA_Ecto-sp13_S_contig16840.4894.1|Name=mRNA_Ecto-sp13_S_contig16840.4894.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2036bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16840:718..2753- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGGGCTGTGGGAGCGCATCAGCCAGTACCAGGATGGCGAGAGCGGGTC
GGATTTCTGGAACGGTGACGTCGCTGCCGCAGAGGGACACCTGTCGCTGA
TGATCTCCAAGCACGCCGAGGGCGACCCCCTCTCTTACACCCACCTGGGC
TTGAGCAGGGCAGCGAAGAACGGCCGGATGGACGTCGTGCGGTGGATGCA
CGACTACACGGACGTCCCGCAGATGCCGAGCGCGATGGACTCTGCCGCGG
CCGGCGGGCACCTCAAGGTGAGGGAGGGAAAGAGATGGACCGTACCGGAC
CCGAATTTGTTGGTAGCCCACACACACGACGATGGCAAATGTTCAGAGCA
CAGCCCACGGCGGGCGAGCGCTCTGATAATTGATTACCCCGTATGTACCG
GCCTCCAAATGTGGTAACCTGGCTGCCGTGCATGTTGGTACATGGAGACT
ACACTGGAGCTGGATGCAGTTTCTCCTCAAGGGTGCTGCTGGAAACGAGT
CTTTAGCAGTATACTTTTCCAAAAACCTTTTTGGCTGGCTCCTTTTATGC
GATGACTGGCGTTTTCCTCGCAACAGCAGTATTTACTATAGTACTGTCGC
GTAAAGGATGTGCCCCGCCTCGTGCCGGGCACTCGGCTCTTCTACTCAAG
AGTAGGAGAATACTCGGCAACTTGACTATTCCCCCTGGGCCAACTACCTG
CACTGGCTTTGTGCCGGGCGTCGTGACTAGCACGGGAGGGACTTTTCTCT
TAGCTGCATCAGACTGCCCTCATCACGACACCTTTTTCTCTTCTTTAAGA
GAGCAGTGCCAGATTTGCGCGGACGCAATGATTCGTCGATTACACTGCTG
TCCTACATAGCCATGTGCACGAACCGCGTGAAAAAATTTAAGAAGACATT
CGGCGTAAGTGATGGATCTAGAGCAGGTTGCAACCGAGCACTCGTTGCAT
TACGGTATCGTTAATACACAGCAAGAGGAGAAGAGGAAGAGCCGAACCCC
AACCTGCACCCGCACCCAAGTGCGGCTTTTTAAGTCCTACCTGTAACTCT
CTGGGTTCCAATTATTTCGATGACATCTGAAATAAAAAAAAGGAGGAAAT
ATCGCTGAATGCTGCTCGGGAAATCTTTGAAATACAGGTAGCTTCCGCTG
ACACCATGGATTCACTGCTGATCTATCTGAAGACCCTTTTACACTGCTGT
AACATCTGTTGCATTTTTTCGTTCTCTTCTGGTACTGTACAGTATTTTTT
GGGCATTCTATTCTACCGAAAAAAAAGGCCGTGAAGGCTGCTGGAGAATT
GTAGGACACTTAGGGGGTGCTACTGCTGTGCCGTAGGTTTGGTGCGGCAA
AGGTGAAAGTTAGCCGGCTCAGTGGTGACGTGGATAGATTCCTGGTCTAC
TCTTGACGAACGCAGGCGGGATGACCCTCAACCCTCCCGGACTTGTGCGC
CTTAGTCGTAGAATACCTAAACAAATGGCGCCCGCACTTCAGAACCTCTA
GTTTCGGCCGAGGCTGGGGTTCTCATGTTGCTTATCATCCTTTTGTGGGC
TACAAGTCGCCGCTATACAGGTTTTAGTGTAGGGGTTCTTAACCTACCCA
AGCTCACATGTGGTTCTTAGCTTGTGATTTTTTCGAGTCTCAATTTCTTA
ACTGCTTATTTCTCAAGTGCAGCCCCTTTCCGTGTATTGGTTGTGCCTTC
TTTAATTTCTTGCCGAGTTGGTCGCGAGGGGGTTATGTGTTTGCCCCCGA
TTACGTCGGCGTCCGGTCTGCCACATTGTGAATTCAATTGAACCCCAAGT
CCATCTTGCACCATTTCGGCGGAGACGATACGTGCATACGTTAATGCGCG
TATTGACGCGAGTGATTTGCTGGTGCACCTCGGTGCCAAGCCCTACAAGT
TCTCCACCCAACCCTTAGCCTACCCCAATCCCCTTCGTGATGGGACAGAT
TGTCAAGTTCCTGGAAGAGCATCGCGGTGAGGGTAACTGTACTCGCTTCG
CCATGAACGGAGCCGCGGCCGCGGGGAACATGGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16840:718..2753-

>mRNA_Ecto-sp13_S_contig16840.4894.1 ID=mRNA_Ecto-sp13_S_contig16840.4894.1|Name=mRNA_Ecto-sp13_S_contig16840.4894.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16840:718..2753- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGGGCTGTGGGAGCGCATCAGCCAGTACCAGGATGGCGAGAGCGGGTC
GGATTTCTGGAACGGTGACGTCGCTGCCGCAGAGGGACACCTGTCGCTGA
TGATCTCCAAGCACGCCGAGGGCGACCCCCTCTCTTACACCCACCTGGGC
TTGAGCAGGGCAGCGAAGAACGGCCGGATGGACGTCGTGCGGTGGATGCA
CGACTACACGGACGTCCCGCAGATGCCGAGCGCGATGGACTCTGCCGCGG
CCGGCGGGCACCTCAAGATTGTCAAGTTCCTGGAAGAGCATCGCGGTGAG
GGTAACTGTACTCGCTTCGCCATGAACGGAGCCGCGGCCGCGGGGAACAT
GGAG
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