mRNA_Ecto-sp13_S_contig16835.4891.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16835.4891.1
Unique NamemRNA_Ecto-sp13_S_contig16835.4891.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16835.4891.1 vs. uniprot
Match: A0A6H5K5T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5T2_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 4.750e-60
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 2 
Query:    2 GKCHYMLFYITAAMNPRMLMTVDSDLKPLPVNVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWIPSSNVLEGVVILTRNPELDDPPAAAA 310
            GKCHYMLFYITAAMNPRMLMTVDSDLKPLPVNVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWIPSSNVLEGVVILTRNPELDDPPAAAA
Sbjct:  878 GKCHYMLFYITAAMNPRMLMTVDSDLKPLPVNVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWIPSSNVLEGVVILTRNPELDDPPAAAA 980
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16835.4891.1 vs. uniprot
Match: A0A5B7BLT8_DAVIN (RPN1_C domain-containing protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BLT8_DAVIN)

HSP 1 Score: 135 bits (341), Expect = 1.850e-39
Identity = 67/97 (69.07%), Postives = 79/97 (81.44%), Query Frame = 2 
Query:    2 GKCHYMLFYITAAMNPRMLMTVDSDLKPLPVNVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWIPSSNVLEGVVILTRNPELDD 292
            GK HY+L+++  AM+PRMLMTVD DLKPL V VRVGQAV+ VGQAG+PKTITGFQTH+TPV+L   DRAELAT ++IP S +LEG VIL  NPE  D
Sbjct:    6 GKYHYVLYFLVLAMHPRMLMTVDEDLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVILAAGDRAELATEKYIPVSPILEGFVILKVNPEYRD 102
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16835.4891.1 vs. uniprot
Match: A0A836CK10_9STRA (26S proteasome non-ATPase regulatory subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK10_9STRA)

HSP 1 Score: 147 bits (372), Expect = 4.240e-39
Identity = 74/101 (73.27%), Postives = 84/101 (83.17%), Query Frame = 2 
Query:    5 KCHYMLFYITAAMNPRMLMTVDSDLKPLPVNVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWIPSSNVLEGVVILTRNPELDDPPAAA 307
            K HY+L+++  AM PRMLM VD D+KPL V VRVGQAVETVGQAG+PKTITGFQTHTTPVLLGVRDRAELATNE++    VLEGVV+L RNP+ D   AAA
Sbjct:  827 KHHYILYFLACAMQPRMLMAVDEDVKPLSVTVRVGQAVETVGQAGRPKTITGFQTHTTPVLLGVRDRAELATNEYMALGGVLEGVVVLRRNPDADAAAAAA 927
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16835.4891.1 vs. uniprot
Match: UPI0009E2E7D7 (26S proteasome non-ATPase regulatory subunit 2-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E2E7D7)

HSP 1 Score: 135 bits (339), Expect = 4.460e-39
Identity = 65/96 (67.71%), Postives = 80/96 (83.33%), Query Frame = 2 
Query:    2 GKCHYMLFYITAAMNPRMLMTVDSDLKPLPVNVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWIPSSNVLEGVVILTRNPELD 289
            GK HY+LF + +AM PRML+T D+DL+PLPV+VRVGQAV+ VGQAGKPKTITGFQTHTTPVLL   +RAELAT E+I  + ++EG VIL +NPE +
Sbjct:   11 GKSHYVLFNLVSAMQPRMLVTFDTDLRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAYGERAELATEEYISLAPIMEGFVILKKNPEYE 106
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16835.4891.1 vs. uniprot
Match: A0A5P1E3C7_ASPOF (RPN1_C domain-containing protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1E3C7_ASPOF)

HSP 1 Score: 134 bits (336), Expect = 1.100e-38
Identity = 66/97 (68.04%), Postives = 77/97 (79.38%), Query Frame = 2 
Query:    2 GKCHYMLFYITAAMNPRMLMTVDSDLKPLPVNVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWIPSSNVLEGVVILTRNPELDD 292
            GK HYML+ +  AM PRMLMTVD +LKPL V VRVGQAV+ VGQAG+PKTITGFQTH+TPVLL   DRAELAT ++IP + +LEG VIL  NP+  D
Sbjct:    7 GKYHYMLYILVLAMQPRMLMTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLTPILEGFVILRENPDYQD 103
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16835.4891.1 vs. uniprot
Match: A0A2K3MHW0_TRIPR (26S proteasome non-ATPase regulatory subunit 2 1a-like protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MHW0_TRIPR)

HSP 1 Score: 132 bits (333), Expect = 3.150e-38
Identity = 63/97 (64.95%), Postives = 79/97 (81.44%), Query Frame = 2 
Query:    2 GKCHYMLFYITAAMNPRMLMTVDSDLKPLPVNVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWIPSSNVLEGVVILTRNPELDD 292
            GK HY+L+++  AM PRML+T+D DLKP+ V VRVGQAV+ VGQAG+PK ITGFQTH+TPVLL   DRAELAT ++IP S++LEG VIL  NP+ +D
Sbjct:    7 GKYHYILYFLVLAMQPRMLLTLDEDLKPISVPVRVGQAVDAVGQAGRPKIITGFQTHSTPVLLAAGDRAELATEKYIPLSSILEGFVILKDNPDYED 103
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16835.4891.1 vs. uniprot
Match: A0A7N0ULL7_KALFE (RPN1_C domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0ULL7_KALFE)

HSP 1 Score: 135 bits (339), Expect = 3.500e-38
Identity = 66/94 (70.21%), Postives = 77/94 (81.91%), Query Frame = 2 
Query:    2 GKCHYMLFYITAAMNPRMLMTVDSDLKPLPVNVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWIPSSNVLEGVVILTRNPE 283
            GK HY+L+ +  AM PRML+TVD +LKPLPV VRVGQAV+ VGQAG+PKTITGFQTHTTPVLL   DRAELAT ++IP S +LEG VIL  NP+
Sbjct:   81 GKYHYVLYLLVLAMQPRMLLTVDENLKPLPVPVRVGQAVDVVGQAGRPKTITGFQTHTTPVLLAAGDRAELATEKYIPLSPILEGFVILKENPD 174
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16835.4891.1 vs. uniprot
Match: A0A7S2CWB6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CWB6_9STRA)

HSP 1 Score: 144 bits (364), Expect = 5.060e-38
Identity = 67/93 (72.04%), Postives = 81/93 (87.10%), Query Frame = 2 
Query:    5 KCHYMLFYITAAMNPRMLMTVDSDLKPLPVNVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWIPSSNVLEGVVILTRNPE 283
            K HYML+Y+T AMNPRMLMTVD + +PLP+NVRVG+AVETVGQAGKPK+I+GFQTHTTPVL+ V +R ELAT E++P  N LEG+VIL +NPE
Sbjct:  804 KVHYMLYYVTTAMNPRMLMTVDEEFQPLPINVRVGKAVETVGQAGKPKSISGFQTHTTPVLISVTERVELATQEYLPMCNHLEGIVILRKNPE 896
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16835.4891.1 vs. uniprot
Match: A0A0A9RBR9_ARUDO (RPN1_C domain-containing protein n=2 Tax=Poaceae TaxID=4479 RepID=A0A0A9RBR9_ARUDO)

HSP 1 Score: 132 bits (332), Expect = 6.810e-38
Identity = 65/94 (69.15%), Postives = 76/94 (80.85%), Query Frame = 2 
Query:    2 GKCHYMLFYITAAMNPRMLMTVDSDLKPLPVNVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWIPSSNVLEGVVILTRNPE 283
            GK HYML+ +  AM PRML+TVD DLKPL V VRVGQAV+ VGQAGKPKTITGFQTH+TPVLL   +RAELAT +++P +  LEG VIL +NPE
Sbjct:   22 GKYHYMLYILVLAMQPRMLLTVDEDLKPLSVPVRVGQAVDVVGQAGKPKTITGFQTHSTPVLLAAGERAELATEKYVPLTPFLEGFVILKKNPE 115
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16835.4891.1 vs. uniprot
Match: A0A7S0G4F9_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G4F9_9RHOD)

HSP 1 Score: 134 bits (337), Expect = 1.740e-37
Identity = 62/94 (65.96%), Postives = 79/94 (84.04%), Query Frame = 2 
Query:    2 GKCHYMLFYITAAMNPRMLMTVDSDLKPLPVNVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWIPSSNVLEGVVILTRNPE 283
            GK HY+L++++ +  PRM+ TVD DL PLPVN+RVGQAV+TVGQAG PKTITGFQTHT+PVLL   +RAELAT E++P ++VLEG VIL +NP+
Sbjct:  114 GKFHYLLYFLSLSSRPRMVFTVDEDLNPLPVNIRVGQAVDTVGQAGHPKTITGFQTHTSPVLLAAGERAELATEEYLPVASVLEGCVILKKNPD 207
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16835.4891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5T2_9PHAE4.750e-60100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5B7BLT8_DAVIN1.850e-3969.07RPN1_C domain-containing protein n=1 Tax=Davidia i... [more]
A0A836CK10_9STRA4.240e-3973.2726S proteasome non-ATPase regulatory subunit 2 n=1... [more]
UPI0009E2E7D74.460e-3967.7126S proteasome non-ATPase regulatory subunit 2-lik... [more]
A0A5P1E3C7_ASPOF1.100e-3868.04RPN1_C domain-containing protein n=1 Tax=Asparagus... [more]
A0A2K3MHW0_TRIPR3.150e-3864.9526S proteasome non-ATPase regulatory subunit 2 1a-... [more]
A0A7N0ULL7_KALFE3.500e-3870.21RPN1_C domain-containing protein n=1 Tax=Kalanchoe... [more]
A0A7S2CWB6_9STRA5.060e-3872.04Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A0A9RBR9_ARUDO6.810e-3869.15RPN1_C domain-containing protein n=2 Tax=Poaceae T... [more]
A0A7S0G4F9_9RHOD1.740e-3765.96Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16835contigEcto-sp13_S_contig16835:2456..3820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size318
Hectar predicted targeting categoryother localisation
Exons3
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462882.525448-CDS-Ecto-sp13_S_contig16835:2456..25601681462882.525448-CDS-Ecto-sp13_S_contig16835:2456..2560Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16835 2457..2560 -
1681462882.5355344-CDS-Ecto-sp13_S_contig16835:3152..32991681462882.5355344-CDS-Ecto-sp13_S_contig16835:3152..3299Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16835 3153..3299 -
1681462882.5454254-CDS-Ecto-sp13_S_contig16835:3756..38201681462882.5454254-CDS-Ecto-sp13_S_contig16835:3756..3820Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16835 3757..3820 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16835.4891.1prot_Ecto-sp13_S_contig16835.4891.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16835 2457..3820 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16835.4891.1

>prot_Ecto-sp13_S_contig16835.4891.1 ID=prot_Ecto-sp13_S_contig16835.4891.1|Name=mRNA_Ecto-sp13_S_contig16835.4891.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
REVPLHALLHHGGDEPAHAHDGGLGLEAAAGERARRASGGDGWTGREAQD
HHGVPDPHHTRAAWRTRPRGVGYERVDSLIECAGGCGHPHKEPRIGRSPG
SSSSS
back to top

mRNA from alignment at Ecto-sp13_S_contig16835:2456..3820-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16835.4891.1 ID=mRNA_Ecto-sp13_S_contig16835.4891.1|Name=mRNA_Ecto-sp13_S_contig16835.4891.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1365bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16835:2456..3820- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGAAGTGCCACTACATGCTCTTCTACATCACGGCGGCGATGAACCCGC
GCATGCTCATGACGGTAAGGGCTGGGGGGCAGCGGGCACGTGCCGTCGGT
CTTTCCTTCTCGAGTGTGACGTGACGGCAGTTGCCGAGCTCGGGAGTGGG
CAAGAGTGTTTCTTTTTGTGATCTTCGTCAAGACCTTCGCCGTGTGTATG
CCGGTGCCTTTGCTGGTTGCCAAGCTCTCAAACGCAGTGTGTGTCAACTC
GGAGTGAAGTGAAAGTAACTGGTGGGTGCAGTCATGCCCAGAAAAAAAAA
GTTGAGGTGACAAATCCTTTCTTGTTCTCACTCTTGCCGGTCCTTTCTTT
TGAACGCTGTCGTGGCCAGAAACAGATTGCGTTTTGGCTCGTGGTGGCCT
CGGAGTGGGCATTTCCCCATCTCCTGTGAGTTGTTGGTTTCTTTATTTTG
GTACCGTCGGCAAAACCGTTATTTTTTTCGTTTTTTTTCCGAACTATCTT
CCCTCCCGCTTTCTTGTTTAGGTGGACTCGGACTTGAAGCCGCTGCCGGT
GAACGTGCGCGTCGGGCAAGCGGTGGAGACGGTTGGACAGGCCGGGAAGC
CCAAGACCATCACGGGGTTCCAGACCCACACCACACCCGTGCTGCTTGGC
GTACGAGACCGCGCGGAGGTAAGACAAAATACGGAATATTCCATGCGGGT
TTCCGTGCAGCGGTGAGCAGGAGGCATTTGCCCTGTCCTACTGTTCCATT
TTGTGGTCGTTTTTTTCGAGGCGGATGTGCCATGTCTCGGTACAACGCAC
ATGTGTTGTTGCCTGGCACGACTGCTGTTTTGTGCCCAAAACCAATATTT
TCTACTTGGTGCTGGTTCACGTGTAACGCCCCTTCCCCCGCTTTGTCTTG
CCTCGCCCGTTTCTTGTCGAACGGCGTCTAACACTATTATATATTTGTAT
CCCCTCACTTTGGTGGCAAACGGGCGAGGGGTCGGCGGGCACTTTTTACG
GGTGACCCGCAGCGGGACTACCGCTACCCGCCCAAAACTTTCCCCGCCCA
AAATTAACCCATTATGTACTTCTTGGTTTGGCACAGCAAACGTGAGGATG
ATGGCCAGCTTCTGGTCCATTCTTCTGTGACATGTAGCCTGGAGCGTCGA
CATCCCGGCATACCGCTAGGTCCCGGCATTAGTAGAGATGCGGCGTTATG
ATCAAACAACTACGGCATTCGCTTACACGAGTAACACCCGGCACGTCATT
TGTATCACAGTTGGCTACGAACGAGTGGATTCCCTCATCGAATGTGCTGG
AGGGTGTGGTCATCCTCACAAGGAACCCAGAATTGGACGATCCCCCGGCA
GCAGCAGCAGCAGCA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16835:2456..3820-

>mRNA_Ecto-sp13_S_contig16835.4891.1 ID=mRNA_Ecto-sp13_S_contig16835.4891.1|Name=mRNA_Ecto-sp13_S_contig16835.4891.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16835:2456..3820- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGAAGTGCCACTACATGCTCTTCTACATCACGGCGGCGATGAACCCGC
GCATGCTCATGACGGTGGACTCGGACTTGAAGCCGCTGCCGGTGAACGTG
CGCGTCGGGCAAGCGGTGGAGACGGTTGGACAGGCCGGGAAGCCCAAGAC
CATCACGGGGTTCCAGACCCACACCACACCCGTGCTGCTTGGCGTACGAG
ACCGCGCGGAGTTGGCTACGAACGAGTGGATTCCCTCATCGAATGTGCTG
GAGGGTGTGGTCATCCTCACAAGGAACCCAGAATTGGACGATCCCCCGGC
AGCAGCAGCAGCAGC
back to top