mRNA_Ecto-sp13_S_contig16834.4890.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16834.4890.1
Unique NamemRNA_Ecto-sp13_S_contig16834.4890.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16834.4890.1 vs. uniprot
Match: D8LQW7_ECTSI (Peptidase aspartic, catalytic UBA-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW7_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 1.750e-62
Identity = 123/153 (80.39%), Postives = 128/153 (83.66%), Query Frame = 1 
Query:  100 MATQAPPTRRAKDNAQHSLPSAPTTGAAAATTNVPTTRQRDPSSRGRGRRRRPVPSNTTAVRALHLAVALLALAGRLVPVQGAGGDLGPSSEWQHPRSRDRRGNKTGGNGSGRGRRETRRGYAGGFSRREQSEREGAVVSEGEGGGGWSRRRK 558
            MATQAP  RRAKD AQHSLPSAPT GAAAATT VP TRQR  ++RG G RR PV S TT +RAL LAVALLALAGRLVP QGAGGDLGP SEWQHPRSR RRGNK GG+GSGRGRRE RRGYAG F  RE+SEREGAV SEGE GGGWSRRRK
Sbjct:    1 MATQAPSIRRAKDGAQHSLPSAPTDGAAAATTKVPMTRQRHSNTRGWGWRRCPVFSTTTTIRALRLAVALLALAGRLVPAQGAGGDLGPRSEWQHPRSRGRRGNKAGGDGSGRGRREARRGYAGAFPCRERSEREGAVASEGEAGGGWSRRRK 153
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16834.4890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQW7_ECTSI1.750e-6280.39Peptidase aspartic, catalytic UBA-like n=1 Tax=Ect... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16834contigEcto-sp13_S_contig16834:3265..3822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score216.1
Seed ortholog evalue1.4e-53
Seed eggNOG ortholog2880.D8LQW7
Model size558
KEGG koko:K11885
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0012505,GO:0016020,GO:0016021,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0098827
Exons1
EggNOG free text desc.aspartic-type endopeptidase activity
EggNOG OGsKOG0012@1,KOG0012@2759
Cds size558
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03051
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462882.493023-CDS-Ecto-sp13_S_contig16834:3264..38221681462882.493023-CDS-Ecto-sp13_S_contig16834:3264..3822Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16834 3265..3822 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16834.4890.1prot_Ecto-sp13_S_contig16834.4890.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16834 3265..3822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16834.4890.1

>prot_Ecto-sp13_S_contig16834.4890.1 ID=prot_Ecto-sp13_S_contig16834.4890.1|Name=mRNA_Ecto-sp13_S_contig16834.4890.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=186bp
MVEDGCIDQRRRFDDACGCNIKRRQILLLTPPPMATQAPPTRRAKDNAQH
SLPSAPTTGAAAATTNVPTTRQRDPSSRGRGRRRRPVPSNTTAVRALHLA
VALLALAGRLVPVQGAGGDLGPSSEWQHPRSRDRRGNKTGGNGSGRGRRE
TRRGYAGGFSRREQSEREGAVVSEGEGGGGWSRRRK
back to top

mRNA from alignment at Ecto-sp13_S_contig16834:3265..3822+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16834.4890.1 ID=mRNA_Ecto-sp13_S_contig16834.4890.1|Name=mRNA_Ecto-sp13_S_contig16834.4890.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=558bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16834:3265..3822+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCGAGGACGGCTGCATCGACCAAAGGAGACGGTTCGACGATGCATG
TGGGTGCAACATCAAACGGCGCCAGATACTACTGCTGACACCACCGCCGA
TGGCGACACAAGCGCCTCCTACTAGGCGAGCCAAGGATAACGCGCAGCAC
TCATTACCCTCGGCCCCCACCACCGGCGCCGCCGCTGCTACGACCAACGT
GCCGACGACGAGACAACGCGACCCCAGTTCCCGCGGTCGGGGGCGGCGGC
GGCGTCCGGTTCCCTCAAACACAACGGCCGTCAGGGCGTTGCACCTCGCT
GTTGCTCTCCTGGCCCTTGCGGGGAGATTGGTACCGGTTCAGGGCGCAGG
TGGTGACCTCGGCCCCAGTAGCGAGTGGCAACACCCCCGCTCCCGAGATC
GTCGGGGAAACAAAACGGGGGGGAATGGTAGCGGTCGTGGGCGGAGGGAG
ACGAGGAGGGGGTACGCGGGAGGCTTCTCCCGCCGAGAGCAGAGCGAGCG
AGAAGGAGCGGTGGTGTCAGAGGGGGAGGGGGGAGGCGGTTGGTCGAGGA
GGAGAAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16834:3265..3822+

>mRNA_Ecto-sp13_S_contig16834.4890.1 ID=mRNA_Ecto-sp13_S_contig16834.4890.1|Name=mRNA_Ecto-sp13_S_contig16834.4890.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=558bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16834:3265..3822+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCGAGGACGGCTGCATCGACCAAAGGAGACGGTTCGACGATGCATG
TGGGTGCAACATCAAACGGCGCCAGATACTACTGCTGACACCACCGCCGA
TGGCGACACAAGCGCCTCCTACTAGGCGAGCCAAGGATAACGCGCAGCAC
TCATTACCCTCGGCCCCCACCACCGGCGCCGCCGCTGCTACGACCAACGT
GCCGACGACGAGACAACGCGACCCCAGTTCCCGCGGTCGGGGGCGGCGGC
GGCGTCCGGTTCCCTCAAACACAACGGCCGTCAGGGCGTTGCACCTCGCT
GTTGCTCTCCTGGCCCTTGCGGGGAGATTGGTACCGGTTCAGGGCGCAGG
TGGTGACCTCGGCCCCAGTAGCGAGTGGCAACACCCCCGCTCCCGAGATC
GTCGGGGAAACAAAACGGGGGGGAATGGTAGCGGTCGTGGGCGGAGGGAG
ACGAGGAGGGGGTACGCGGGAGGCTTCTCCCGCCGAGAGCAGAGCGAGCG
AGAAGGAGCGGTGGTGTCAGAGGGGGAGGGGGGAGGCGGTTGGTCGAGGA
GGAGAAAG
back to top