mRNA_Ecto-sp13_S_contig16833.4889.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16833.4889.1
Unique NamemRNA_Ecto-sp13_S_contig16833.4889.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16833.4889.1 vs. uniprot
Match: D7FM02_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM02_ECTSI)

HSP 1 Score: 434 bits (1116), Expect = 1.620e-150
Identity = 225/239 (94.14%), Postives = 230/239 (96.23%), Query Frame = 2 
Query:  143 MSYPTNDNSRWEPPPRRLSEGTIVLAPRRRSIIRDEEGEGEDVEEKADPPLGRWHQHSLCPCRNPNIMLYSLCXXXXAMGDIGCILRENWMCYPAYCLGAWCPCCVGDTRELVAEKYNLPIVSWDPDEFGWCFVRVIGARLMCFCSVCLMPCLHISQMRAEVAFRKHGKATVCPXXXXXXXXXXXPGQATYKEEELDYPRDDGVERPHAIEXXXXXXXGGKRVELTPEREVKVVLDYPR 859
            MSYPTNDNS WEPP RR SEGTIVLAPRRRSIIRDEEGEGE VEEK DPPLGRWHQHSLCPCRNPNIMLYSLCXXXXAMGDIGC LRENWMCYPAYCLGA CPCCVGDTRELVAEKYNLPIVSWDPDEFGWCFV++IGARLMCFCSVCLMPCLHISQMRAEVAFRKHGKATVCPXXXXXXXXXXX G+ TYKEEELDYPRDDGV+RPHAIEXXXXXXXGGKRVELTPE+EVKVVLDYPR
Sbjct:    1 MSYPTNDNSGWEPPSRRPSEGTIVLAPRRRSIIRDEEGEGEGVEEKPDPPLGRWHQHSLCPCRNPNIMLYSLCXXXXAMGDIGCYLRENWMCYPAYCLGASCPCCVGDTRELVAEKYNLPIVSWDPDEFGWCFVKMIGARLMCFCSVCLMPCLHISQMRAEVAFRKHGKATVCPXXXXXXXXXXXXGETTYKEEELDYPRDDGVKRPHAIEXXXXXXXGGKRVELTPEKEVKVVLDYPR 239
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16833.4889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM02_ECTSI1.620e-15094.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16833contigEcto-sp13_S_contig16833:48..2694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1201
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_000370.1
Cds size780
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462882.420485-UTR-Ecto-sp13_S_contig16833:47..3861681462882.420485-UTR-Ecto-sp13_S_contig16833:47..386Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16833 48..386 -
1681462882.4672554-UTR-Ecto-sp13_S_contig16833:2612..26941681462882.4672554-UTR-Ecto-sp13_S_contig16833:2612..2694Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16833 2613..2694 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462882.435096-CDS-Ecto-sp13_S_contig16833:386..8421681462882.435096-CDS-Ecto-sp13_S_contig16833:386..842Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16833 387..842 -
1681462882.4496121-CDS-Ecto-sp13_S_contig16833:1738..18341681462882.4496121-CDS-Ecto-sp13_S_contig16833:1738..1834Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16833 1739..1834 -
1681462882.458647-CDS-Ecto-sp13_S_contig16833:2384..26121681462882.458647-CDS-Ecto-sp13_S_contig16833:2384..2612Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16833 2385..2612 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16833.4889.1prot_Ecto-sp13_S_contig16833.4889.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16833 387..2612 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16833.4889.1

>prot_Ecto-sp13_S_contig16833.4889.1 ID=prot_Ecto-sp13_S_contig16833.4889.1|Name=mRNA_Ecto-sp13_S_contig16833.4889.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=260bp
MVPPLRHRETNSGAPAGKAVMSYPTNDNSRWEPPPRRLSEGTIVLAPRRR
SIIRDEEGEGEDVEEKADPPLGRWHQHSLCPCRNPNIMLYSLCCCCCAMG
DIGCILRENWMCYPAYCLGAWCPCCVGDTRELVAEKYNLPIVSWDPDEFG
WCFVRVIGARLMCFCSVCLMPCLHISQMRAEVAFRKHGKATVCPCCCCEC
GGGEGPGQATYKEEELDYPRDDGVERPHAIEEADYPREGGKRVELTPERE
VKVVLDYPR*
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mRNA from alignment at Ecto-sp13_S_contig16833:48..2694-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16833.4889.1 ID=mRNA_Ecto-sp13_S_contig16833.4889.1|Name=mRNA_Ecto-sp13_S_contig16833.4889.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2647bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16833:48..2694- (Ectocarpus species13 EcNAP12_S_4_19m)
CACGTCTCTTGGGCGGCACCAAAGTAGAGGCTCCGCAGAATGATATGCGG
CGCATTAGCACGAAGCTTGTTCTGCGTATGTCATGGTTCCACCATTGCGC
CACAGAGAGACAAACTCAGGAGCACCGGCAGGGAAGGCGGTGATGTCGTA
CCCAACGAACGACAACTCCAGGTGGGAGCCCCCCCCGCGCAGACTATCGG
AAGGGACGATAGTGCTTGCACCCAGGCGACGCTCCATCATCAGAGACGAG
GAGGGCGAGGGAGAAGATGTTGAAGAGAAGGCTGATCCCCCGTTGGGACG
ATGGCACCAGGTGCAGCAGTAGGCGGTATAACACGGTCGTCCTTTGGCAC
ATGCTTCAGAGTGTTCATGCAGTGCACTGATGCTGCTGCTGCGCACAAAG
ATTAGCCGTGGAAAACATCAGCTCAATAACGGCTGTCACGAGTGTACAGC
CAGGACGAATAGCATAGGGGGTCCCGAAGATCTGCTCAATGAAGGTCGGG
CCACTTTTCTGCGGTGTCGTGTGCACAATGTTGTTCCGCCAATGAAACTT
TGATGGGATGCACTGCTGTTGGCGCATGCATTCGCTTCAAACGTCGCGGC
GGCGTTCACTTCGTGGGTACGGCTCTGCAACTACACCCATTCCTGACAGA
GCCACAGTTGTCCTGCTTCCTTGTTGTTGTTGTTGTTGTTGTCGTCTTCA
CATTAAAAACCGTTCCGGTATCTCTTCACCCAAACCTTCATCTGTCCATG
CTTTTCACAGCGGTAGCAGTAGCAGCAAACACTTTACAGATCGATTTTTG
ATCGGGCTCTTGCCGTCCTGTCCCTGTCCCTATTCCCCGCTTGCTGTATT
GGCTCGGAAGCACTCTCTTTGTCCCTGTCGAAACCCGAACATCATGCTCT
ACTCTCTGTGCTGCTGCTGCTGCGCTATGGGAGACATCGGCTGCATCCTT
CGTGAGGTGAGAGCTTTTGAGCACCGCTGCTCCCATCATCCCATTACCGC
CGCAGTCCGTCCGTTCTCGGAATCTCCACTTCCACAGTTCGATGTATGTT
GTACCGGTCCCAAAACCAGTAGACCATTGCACATATATCTTCCGTCACAA
CAACGGAAGGGGTCCCCTCTTGCACATCACCAACCGCCGAGTTGTCGTAT
GTGGACTGATAACAGTCCGGTGTATGGCGTTCGAAGTTCTCCGGAGTTCG
TGAGTGCCACTGCTGTACCGAGACAAGGAAGTAGCGGACTCCTTTTTTCG
AAATTTCGGAAAGGCAAACACCTCAGGGGCAGCTTGAGCTAACGCGGGAG
GGCTCGAGAGGAACCAATCTGTTCAGCCCCGAATCGGATGTGTGCTGAGT
AGGATACGAGACCGCATAGTAGCTACTGCAGGTGCCGTTGACAGCAGTGG
GGGGAAGTGCTGTACGGTCCTGGTGCCGCTAGTAACCCGAGTGTTGGTGT
GAACCAAATCTCGTGTACGACCGGTAGGATAAGTACCGGGTAGCTCATAC
ATATGTTTTTGAAGCATAGTACGTGCAGGAACCTTTGAAAGCCTTTTAAG
TCCCATGGTGACAATCTTTCTAGCTTCATCTGCTCATGGTGTGCCCGGCA
ATCCTTGTCCTTAGAGCTAGCTGTTGGTCCCCCGGGTGCCTTATGGGAAG
TATGGCGTGTGCGTTACTACCGACGGACTTGAACAGAAAAACAGCTGTCG
TTGGTTGATGGCAATAGTCCGCCGGCTCATGCTAATATTGCCGCTGCTGG
GCCACCAAAACGTGCAAAACGCTAGCCCTTCCTCACCCCCCTCACCCCCT
CCCCCCTATAAACACACATCGAAACATCTCCACGCATTGTGCCCCGGACC
AGAACTGGATGTGTTACCCAGCGTACTGCCTTGGAGCGTGGTGCCCGTGC
TGCGTGGGCGACACGCGCGAGCTGGTGGCGGAGAAATATAACCTACCCAT
CGTTTCGTGGGATCCGGACGAGTTCGGCTGGTGCTTCGTCAGGGTGATCG
GCGCGAGGCTCATGTGCTTCTGCAGCGTGTGCCTGATGCCGTGCCTTCAC
ATCTCCCAGATGAGGGCGGAGGTAGCGTTCCGGAAGCACGGGAAGGCGAC
CGTGTGTCCGTGCTGCTGCTGCGAGTGCGGCGGGGGCGAAGGCCCCGGTC
AAGCCACGTACAAGGAGGAGGAGCTGGACTACCCGCGGGACGATGGAGTG
GAGCGCCCGCATGCCATTGAAGAGGCCGACTACCCACGGGAAGGCGGCAA
GAGGGTCGAACTCACGCCCGAGAGAGAGGTTAAGGTCGTGTTGGATTATC
CGCGTTGAACTTGTTACTTCTGCACCCTTGAACTCCTGTGTAGTTAGGGA
ATTACGCGTGGCGAATCGGGCTGGCCTTAATCATGAAATGAGCGTGTGCG
ATGAGTATTTTAGCGCCGGTGGAGGGGGGAGTATCCATCGTGTGTCATCA
CAGGGAGGCGGCCTTTTAAAACCTCTCGTGTGCTGCCAGTCTGTGTCTCC
ACTACTCCTACTTTGTATGTGATGTAGATAAGCCTGTAGGCCGCCAATGG
GGTGAGGGTGTTGCCGCGCGTACAGTGCCGCATGTTACAGTAACAGCAGT
GAAGAGTGTGTGCGCCACGCTCGATTTCGATGGCTCGCTGGTTGTCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16833:48..2694-

>mRNA_Ecto-sp13_S_contig16833.4889.1 ID=mRNA_Ecto-sp13_S_contig16833.4889.1|Name=mRNA_Ecto-sp13_S_contig16833.4889.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=780bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16833:48..2694- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTCCACCATTGCGCCACAGAGAGACAAACTCAGGAGCACCGGCAGG
GAAGGCGGTGATGTCGTACCCAACGAACGACAACTCCAGGTGGGAGCCCC
CCCCGCGCAGACTATCGGAAGGGACGATAGTGCTTGCACCCAGGCGACGC
TCCATCATCAGAGACGAGGAGGGCGAGGGAGAAGATGTTGAAGAGAAGGC
TGATCCCCCGTTGGGACGATGGCACCAGCACTCTCTTTGTCCCTGTCGAA
ACCCGAACATCATGCTCTACTCTCTGTGCTGCTGCTGCTGCGCTATGGGA
GACATCGGCTGCATCCTTCGTGAGAACTGGATGTGTTACCCAGCGTACTG
CCTTGGAGCGTGGTGCCCGTGCTGCGTGGGCGACACGCGCGAGCTGGTGG
CGGAGAAATATAACCTACCCATCGTTTCGTGGGATCCGGACGAGTTCGGC
TGGTGCTTCGTCAGGGTGATCGGCGCGAGGCTCATGTGCTTCTGCAGCGT
GTGCCTGATGCCGTGCCTTCACATCTCCCAGATGAGGGCGGAGGTAGCGT
TCCGGAAGCACGGGAAGGCGACCGTGTGTCCGTGCTGCTGCTGCGAGTGC
GGCGGGGGCGAAGGCCCCGGTCAAGCCACGTACAAGGAGGAGGAGCTGGA
CTACCCGCGGGACGATGGAGTGGAGCGCCCGCATGCCATTGAAGAGGCCG
ACTACCCACGGGAAGGCGGCAAGAGGGTCGAACTCACGCCCGAGAGAGAG
GTTAAGGTCGTGTTGGATTATCCGCGTTGA
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