mRNA_Ecto-sp13_S_contig16829.4887.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16829.4887.1
Unique NamemRNA_Ecto-sp13_S_contig16829.4887.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16829.4887.1 vs. uniprot
Match: D8LJD3_ECTSI (Glutamate cysteine ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJD3_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.350e-31
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 MGLLTVGKPHSWEHAGEHRKYVAKHGVIQFLNTYNSVKDITNDELLWGDE 150
            MGLLTVGKPHSWEHAGEHRKYVAKHGVIQFLNTYNSVKDITNDELLWGDE
Sbjct:    1 MGLLTVGKPHSWEHAGEHRKYVAKHGVIQFLNTYNSVKDITNDELLWGDE 50
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BLAST of mRNA_Ecto-sp13_S_contig16829.4887.1 vs. uniprot
Match: A0A7S2BNJ6_9STRA (Glutamate--cysteine ligase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BNJ6_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 8.050e-14
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 MGLLTVGKPHSWEHAGEHRKYVAKHGVIQFLNTYNSVKDITNDELLWGDEV 153
            MGLL  G P +W+ +  H KYV  HGV+QF++TYN V+D  NDE  WGDE+
Sbjct:    1 MGLLKQGLPMTWDESKPHLKYVRHHGVLQFISTYNQVRDAHNDEFFWGDEL 51
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BLAST of mRNA_Ecto-sp13_S_contig16829.4887.1 vs. uniprot
Match: A0A7S2W4S8_9STRA (Glutamate--cysteine ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W4S8_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.420e-13
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 MGLLTVGKPHSWEHAGEHRKYVAKHGVIQFLNTYNSVKDITNDELLWGDEV 153
            MGLL VG+P +WE +  H +YV +HGV+QF+  Y+ VKD  ND+L WGDEV
Sbjct:    1 MGLLKVGRPLTWEESKAHLQYVREHGVVQFMEVYDRVKDTANDDLFWGDEV 51
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BLAST of mRNA_Ecto-sp13_S_contig16829.4887.1 vs. uniprot
Match: A0A8C4TBN4_ERPCA (Glutamate--cysteine ligase n=2 Tax=Polypteridae TaxID=8289 RepID=A0A8C4TBN4_ERPCA)

HSP 1 Score: 72.0 bits (175), Expect = 1.930e-13
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 MGLLTVGKPHSWEHAGEHRKYVAKHGVIQFLNTYNSVKDITNDELLWGDEV 153
            MGLLT+G P SWE   +H  +V KHG++QFLN YN VKD   D L WGDEV
Sbjct:    1 MGLLTLGSPLSWEETKKHADHVRKHGILQFLNIYNKVKDRQKDVLKWGDEV 51
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BLAST of mRNA_Ecto-sp13_S_contig16829.4887.1 vs. uniprot
Match: W5NJS5_LEPOC (Glutamate--cysteine ligase n=4 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5NJS5_LEPOC)

HSP 1 Score: 71.6 bits (174), Expect = 2.640e-13
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 MGLLTVGKPHSWEHAGEHRKYVAKHGVIQFLNTYNSVKDITNDELLWGDEV 153
            MGLL++G P +WE   EH  +V KHG+IQFLN YN VKD   D L WGDEV
Sbjct:    1 MGLLSLGSPLTWEETREHADHVRKHGIIQFLNIYNQVKDRQKDVLKWGDEV 51
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BLAST of mRNA_Ecto-sp13_S_contig16829.4887.1 vs. uniprot
Match: A0A7S1ZWD3_TRICV (Glutamate--cysteine ligase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZWD3_TRICV)

HSP 1 Score: 71.6 bits (174), Expect = 2.650e-13
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 MGLLTVGKPHSWEHAGEHRKYVAKHGVIQFLNTYNSVKDITNDELLWGDEV 153
            MGLL VG P  WE + +H KY+   GV QF++TYN VKD+  DELLWGDE+
Sbjct:   36 MGLLKVGTPMPWEKSKKHNKYIRSAGVRQFISTYNRVKDLKGDELLWGDEI 86
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BLAST of mRNA_Ecto-sp13_S_contig16829.4887.1 vs. uniprot
Match: A0A7R9WEL6_9STRA (Glutamate--cysteine ligase (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WEL6_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.620e-13
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 MGLLTVGKPHSWEHAGEHRKYVAKHGVIQFLNTYNSVKDITNDELLWGDEV 153
            MGLL VG P  WE + +H  Y+ K GV QF++TYN VKD+  DELLWGDE+
Sbjct:   43 MGLLKVGTPMPWEKSKKHNHYIRKAGVRQFISTYNRVKDLKGDELLWGDEI 93
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BLAST of mRNA_Ecto-sp13_S_contig16829.4887.1 vs. uniprot
Match: A0A1W0WQH5_HYPDU (Glutamate--cysteine ligase n=1 Tax=Hypsibius dujardini TaxID=232323 RepID=A0A1W0WQH5_HYPDU)

HSP 1 Score: 70.5 bits (171), Expect = 6.750e-13
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 MGLLTVGKPHSWEHAGEHRKYVAKHGVIQFLNTYNSVKDITNDELLWGDEV 153
            MGLLT G P SWE   +H  +V KHG++QF+N YN +KD  +D+L WGDE+
Sbjct:    1 MGLLTEGSPLSWEETKKHADHVRKHGILQFINLYNKLKDRKHDQLKWGDEI 51
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BLAST of mRNA_Ecto-sp13_S_contig16829.4887.1 vs. uniprot
Match: A0A8J7NY58_ATRSP (Elongation of very long chain fatty acids protein 5 (Fragment) n=1 Tax=Atractosteus spatula TaxID=7917 RepID=A0A8J7NY58_ATRSP)

HSP 1 Score: 70.1 bits (170), Expect = 9.230e-13
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 MGLLTVGKPHSWEHAGEHRKYVAKHGVIQFLNTYNSVKDITNDELLWGDEV 153
            MGLL++G P +WE   +H  +V KHG+IQFLN YN VKD   D L WGDEV
Sbjct:    1 MGLLSLGSPLNWEETRKHADHVRKHGIIQFLNIYNQVKDRQKDVLKWGDEV 51
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BLAST of mRNA_Ecto-sp13_S_contig16829.4887.1 vs. uniprot
Match: A0A672HKP0_SALFA (Glutamate--cysteine ligase n=8 Tax=Percomorphaceae TaxID=1489872 RepID=A0A672HKP0_SALFA)

HSP 1 Score: 69.7 bits (169), Expect = 1.260e-12
Identity = 29/51 (56.86%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 MGLLTVGKPHSWEHAGEHRKYVAKHGVIQFLNTYNSVKDITNDELLWGDEV 153
            MGLL+ G P +WE   +H  Y+ KHG++QFLN YN VKD   D L WGDEV
Sbjct:    1 MGLLSQGSPLNWEETRKHADYIRKHGILQFLNIYNKVKDRQKDVLKWGDEV 51
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16829.4887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJD3_ECTSI1.350e-31100.00Glutamate cysteine ligase n=1 Tax=Ectocarpus silic... [more]
A0A7S2BNJ6_9STRA8.050e-1454.90Glutamate--cysteine ligase (Fragment) n=1 Tax=Dict... [more]
A0A7S2W4S8_9STRA1.420e-1356.86Glutamate--cysteine ligase n=1 Tax=Rhizochromulina... [more]
A0A8C4TBN4_ERPCA1.930e-1360.78Glutamate--cysteine ligase n=2 Tax=Polypteridae Ta... [more]
W5NJS5_LEPOC2.640e-1360.78Glutamate--cysteine ligase n=4 Tax=Lepisosteus ocu... [more]
A0A7S1ZWD3_TRICV2.650e-1358.82Glutamate--cysteine ligase n=1 Tax=Trieres chinens... [more]
A0A7R9WEL6_9STRA3.620e-1358.82Glutamate--cysteine ligase (Fragment) n=1 Tax=Pseu... [more]
A0A1W0WQH5_HYPDU6.750e-1354.90Glutamate--cysteine ligase n=1 Tax=Hypsibius dujar... [more]
A0A8J7NY58_ATRSP9.230e-1358.82Elongation of very long chain fatty acids protein ... [more]
A0A672HKP0_SALFA1.260e-1256.86Glutamate--cysteine ligase n=8 Tax=Percomorphaceae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16829contigEcto-sp13_S_contig16829:581..733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop0
Start1
Seed ortholog score71.2
Seed ortholog evalue1.5e-10
Seed eggNOG ortholog7918.ENSLOCP00000020884
Preferred nameGCLC
Model size153
KEGG rclassRC00064,RC00090
KEGG koko:K11204
KEGG ReactionR00894,R10993
KEGG Pathwayko00270,ko00480,ko01100,ko04212,ko04216,map00270,map00480,map01100,map04212,map04216
KEGG ModuleM00118
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000096,GO:0000166,GO:0000287,GO:0000302,GO:0000303,GO:0000305,GO:0000902,GO:0000904,GO:0001101,GO:0001678,GO:0002009,GO:0002165,GO:0003008,GO:0003013,GO:0003018,GO:0003254,GO:0003674,GO:0003824,GO:0004357,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006082,GO:0006355,GO:0006518,GO:0006520,GO:0006534,GO:0006536,GO:0006575,GO:0006732,GO:0006749,GO:0006750,GO:0006766,GO:0006767,GO:0006790,GO:0006807,GO:0006915,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007275,GO:0007399,GO:0007409,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0007568,GO:0007584,GO:0008015,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009058,GO:0009064,GO:0009069,GO:0009266,GO:0009408,GO:0009410,GO:0009605,GO:0009612,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0010941,GO:0012501,GO:0014070,GO:0014823,GO:0016043,GO:0016595,GO:0016597,GO:0016874,GO:0016879,GO:0016881,GO:0017076,GO:0017109,GO:0019184,GO:0019219,GO:0019222,GO:0019725,GO:0019752,GO:0019852,GO:0022008,GO:0023051,GO:0023057,GO:0030030,GO:0030154,GO:0030162,GO:0030182,GO:0030554,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031406,GO:0031667,GO:0032268,GO:0032269,GO:0032270,GO:0032354,GO:0032434,GO:0032436,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032868,GO:0032869,GO:0032870,GO:0032989,GO:0032990,GO:0032991,GO:0033500,GO:0034097,GO:0034284,GO:0034641,GO:0034698,GO:0035107,GO:0035114,GO:0035120,GO:0035150,GO:0035220,GO:0035239,GO:0035295,GO:0035690,GO:0035728,GO:0035729,GO:0036094,GO:0042176,GO:0042221,GO:0042391,GO:0042398,GO:0042493,GO:0042592,GO:0042593,GO:0042981,GO:0043043,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043436,GO:0043523,GO:0043524,GO:0043531,GO:0043603,GO:0043604,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044344,GO:0044424,GO:0044444,GO:0044464,GO:0044752,GO:0045454,GO:0045732,GO:0045862,GO:0045892,GO:0045934,GO:0046685,GO:0046686,GO:0046688,GO:0046872,GO:0046982,GO:0046983,GO:0048037,GO:0048468,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048585,GO:0048666,GO:0048667,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048878,GO:0050662,GO:0050789,GO:0050794,GO:0050801,GO:0050865,GO:0050866,GO:0050880,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051186,GO:0051188,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051409,GO:0051716,GO:0051881,GO:0051900,GO:0055082,GO:0060255,GO:0060429,GO:0060548,GO:0060562,GO:0061136,GO:0061564,GO:0065007,GO:0065008,GO:0070555,GO:0070848,GO:0070887,GO:0071214,GO:0071229,GO:0071230,GO:0071260,GO:0071310,GO:0071322,GO:0071326,GO:0071331,GO:0071333,GO:0071363,GO:0071371,GO:0071372,GO:0071375,GO:0071407,GO:0071417,GO:0071495,GO:0071496,GO:0071704,GO:0071774,GO:0071840,GO:0080090,GO:0090066,GO:0097066,GO:0097067,GO:0097068,GO:0097069,GO:0097159,GO:0097367,GO:0104004,GO:0120036,GO:0120039,GO:1901214,GO:1901215,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901800,GO:1902494,GO:1902679,GO:1903050,GO:1903052,GO:1903320,GO:1903321,GO:1903362,GO:1903364,GO:1903506,GO:1903507,GO:1904386,GO:1904387,GO:2000058,GO:2000060,GO:2000112,GO:2000113,GO:2000489,GO:2000490,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
Exons1
EggNOG free text desc.Glutamate--cysteine ligase catalytic subunit
EggNOG OGs38BDB@33154,3BAJC@33208,3CXBU@33213,481BZ@7711,48ZNY@7742,49U4V@7898,KOG3754@1,KOG3754@2759
EC6.3.2.2
Cds size153
COG Functional cat.H
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462882.1955698-CDS-Ecto-sp13_S_contig16829:580..7331681462882.1955698-CDS-Ecto-sp13_S_contig16829:580..733Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16829 581..733 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16829.4887.1prot_Ecto-sp13_S_contig16829.4887.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16829 581..733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16829.4887.1

>prot_Ecto-sp13_S_contig16829.4887.1 ID=prot_Ecto-sp13_S_contig16829.4887.1|Name=mRNA_Ecto-sp13_S_contig16829.4887.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
MGLLTVGKPHSWEHAGEHRKYVAKHGVIQFLNTYNSVKDITNDELLWGDE
V
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mRNA from alignment at Ecto-sp13_S_contig16829:581..733+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16829.4887.1 ID=mRNA_Ecto-sp13_S_contig16829.4887.1|Name=mRNA_Ecto-sp13_S_contig16829.4887.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16829:581..733+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCCTCTTGACGGTCGGGAAGCCTCACAGCTGGGAGCATGCAGGCGA
GCACCGCAAGTATGTGGCGAAGCACGGGGTGATCCAGTTCCTCAACACGT
ACAACTCCGTCAAGGATATCACGAATGACGAGCTGCTGTGGGGAGACGAG
GTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16829:581..733+

>mRNA_Ecto-sp13_S_contig16829.4887.1 ID=mRNA_Ecto-sp13_S_contig16829.4887.1|Name=mRNA_Ecto-sp13_S_contig16829.4887.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16829:581..733+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCCTCTTGACGGTCGGGAAGCCTCACAGCTGGGAGCATGCAGGCGA
GCACCGCAAGTATGTGGCGAAGCACGGGGTGATCCAGTTCCTCAACACGT
ACAACTCCGTCAAGGATATCACGAATGACGAGCTGCTGTGGGGAGACGAG
GTA
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