mRNA_Ecto-sp13_S_contig16823.4886.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16823.4886.1
Unique NamemRNA_Ecto-sp13_S_contig16823.4886.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16823.4886.1 vs. uniprot
Match: D7FP97_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP97_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 1.790e-47
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 3
Query:    3 IFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDLPPAGFPFQILAIFMTLLEGNAFATFVSGAAPDPLT 263
            IFMEERSIYTREHSRGAYRV+SYLLCNFLIYLPVCLVMSVAFTAISYFMIDLPPAGFPFQILAIFMTLLEGNAFATFVSG+APDPLT
Sbjct:  465 IFMEERSIYTREHSRGAYRVMSYLLCNFLIYLPVCLVMSVAFTAISYFMIDLPPAGFPFQILAIFMTLLEGNAFATFVSGSAPDPLT 551          
BLAST of mRNA_Ecto-sp13_S_contig16823.4886.1 vs. uniprot
Match: A0A6S9KQH8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KQH8_HETAK)

HSP 1 Score: 87.0 bits (214), Expect = 4.520e-18
Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = 3
Query:    3 IFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDLPPAG--FPFQILAIFMTLLEGNAFATFVSGAAPDPLT 263
            IF+ ER I+TRE+SRGAYR ISY+L   L+++PV  ++ + FT++S+FM+ LP     F FQ+L + +T   GN F T +SG  PD LT
Sbjct:  428 IFLNERDIFTRENSRGAYRSISYVLAGTLVFIPVTFILGLVFTSVSWFMVGLPNDANLFFFQVLTLLVTCFLGNCFCTLISGIVPDALT 516          
BLAST of mRNA_Ecto-sp13_S_contig16823.4886.1 vs. uniprot
Match: A0A2R6XAD8_MARPO (ABC transporter domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XAD8_MARPO)

HSP 1 Score: 72.0 bits (175), Expect = 8.620e-13
Identity = 35/86 (40.70%), Postives = 57/86 (66.28%), Query Frame = 3
Query:    3 IFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDL--PPAGFPFQILAIFMTLLEGNAFATFVSGAAPD 254
            IF+EER I+ RE SRGAYR  +Y++   ++ +P  +++++ F+ ISY+++ L   P  F F  L +F+ LL  N+F +FVSG  P+
Sbjct:  492 IFLEERQIFIRETSRGAYRAATYVISGAIVIIPFLMILAIVFSTISYWLVGLVAEPGPFFFFTLTVFLVLLVANSFVSFVSGLVPN 577          
BLAST of mRNA_Ecto-sp13_S_contig16823.4886.1 vs. uniprot
Match: A0A2K1L8H1_PHYPA (ABC transporter domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L8H1_PHYPA)

HSP 1 Score: 66.6 bits (161), Expect = 6.750e-11
Identity = 37/86 (43.02%), Postives = 54/86 (62.79%), Query Frame = 3
Query:    3 IFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDLPP-AGFPFQ-ILAIFMTLLEGNAFATFVSGAAPD 254
            +F+ ER I+ RE SRGAYRV +Y+L   L+ LP   V+++ F+ +SYFM+ L   AG  F  +  +F+TL   NAF  F++   PD
Sbjct:  427 VFLNERQIFIRETSRGAYRVSAYVLSQALVILPFLFVLAMIFSCVSYFMVGLAKDAGAFFSFVFILFLTLAVANAFVAFMASFVPD 512          
BLAST of mRNA_Ecto-sp13_S_contig16823.4886.1 vs. uniprot
Match: A0A1Y1IEV1_KLENI (ABC transporter G family n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IEV1_KLENI)

HSP 1 Score: 66.2 bits (160), Expect = 9.240e-11
Identity = 34/86 (39.53%), Postives = 54/86 (62.79%), Query Frame = 3
Query:    3 IFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDLPPAGFPFQ--ILAIFMTLLEGNAFATFVSGAAPD 254
            +F+EER I+ RE SRGAYR  ++++   L+Y P  L+++VAF AISYFM+ +     PF   +L++++ L+  N F  F     P+
Sbjct:  437 VFLEERLIFVRETSRGAYRTSAFVVAQQLVYAPFFLLLAVAFCAISYFMVGMAAGTEPFLFFVLSVWLVLIVANTFVLFWGAVVPN 522          
BLAST of mRNA_Ecto-sp13_S_contig16823.4886.1 vs. uniprot
Match: A0A5C7ICG9_9ROSI (ABC transporter domain-containing protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7ICG9_9ROSI)

HSP 1 Score: 63.9 bits (154), Expect = 5.980e-10
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 3
Query:    3 IFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDLPPA--GFPFQILAIFMTLLEGNAFATFVSGAAPD 254
            IF++ER I TRE SRGAYRV SY+L N LI++P  L++ + FT   Y++I L     GF +  L ++M LL  N+F    S   P+
Sbjct:  401 IFLQERGILTRETSRGAYRVSSYVLSNTLIFIPFLLMVGLLFTTPVYWLIGLRRDIDGFMYFSLVVWMVLLMSNSFVACFSALVPN 486          
BLAST of mRNA_Ecto-sp13_S_contig16823.4886.1 vs. uniprot
Match: A0A8J5SHR1_ZIZPA (AAA domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5SHR1_ZIZPA)

HSP 1 Score: 63.9 bits (154), Expect = 6.020e-10
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 3
Query:    3 IFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDLPPA--GFPFQILAIFMTLLEGNAFATFVSGAAPD 254
            +F+ ER IY RE +  AYR  SY L N ++  P  +V+S+AFT IS+F + L     GF F +L +  +   G  F TF+SG  PD
Sbjct:  531 VFLVERYIYLRETAHNAYRRSSYTLSNAIVAFPPLVVLSLAFTVISFFAVGLAGGVGGFLFFVLIVLASFWAGGGFVTFLSGVIPD 616          
BLAST of mRNA_Ecto-sp13_S_contig16823.4886.1 vs. uniprot
Match: A0A2K1JQD6_PHYPA (ABC transporter domain-containing protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JQD6_PHYPA)

HSP 1 Score: 63.9 bits (154), Expect = 6.030e-10
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 3
Query:    3 IFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDLPPAG--FPFQILAIFMTLLEGNAFATFVSGAAPD 254
            IF+EER+I TRE SRGAYRV SY+L + LI+LP    +++ +    Y ++ L P    F F +L I++ L+  N+F +F+S    D
Sbjct:  481 IFLEERTILTRETSRGAYRVSSYVLSSTLIFLPFLFFVALLYAGPVYHLVGLAPQSDAFIFFLLVIWLVLVTANSFVSFLSAMVSD 566          
BLAST of mRNA_Ecto-sp13_S_contig16823.4886.1 vs. uniprot
Match: A0A0K9P591_ZOSMR (ABC transporter G family member n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9P591_ZOSMR)

HSP 1 Score: 63.5 bits (153), Expect = 8.190e-10
Identity = 33/86 (38.37%), Postives = 56/86 (65.12%), Query Frame = 3
Query:    3 IFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDL--PPAGFPFQILAIFMTLLEGNAFATFVSGAAPD 254
            IF++ER+I TRE +RGAYR+ SY+  N +I+LP  L +++ ++  +Y+M+ L   P  F +  L I++ +L  N+F +F S   P+
Sbjct:  412 IFLQERTILTRETTRGAYRISSYVTANTVIFLPFLLSVAILYSLPAYWMVGLRRDPTAFLYFTLVIWLVVLMANSFVSFFSALVPN 497          
BLAST of mRNA_Ecto-sp13_S_contig16823.4886.1 vs. uniprot
Match: A0A2K1KX83_PHYPA (ABC transporter domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KX83_PHYPA)

HSP 1 Score: 63.5 bits (153), Expect = 8.230e-10
Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = 3
Query:    3 IFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDLPPA--GFPFQILAIFMTLLEGNAFATFVS 239
            IF+EER+I TRE SRGAYRV SY+L + L++LP  L +++ +    Y+++ L P    F F +L I++ L+  N+F +F S
Sbjct:  472 IFLEERNILTRETSRGAYRVSSYVLSSTLVFLPFLLFIALLYAGPVYYLVGLAPQVDAFLFFLLVIWLILVTANSFVSFFS 552          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16823.4886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP97_ECTSI1.790e-4797.70ABC transporter domain-containing protein n=1 Tax=... [more]
A0A6S9KQH8_HETAK4.520e-1848.31Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2R6XAD8_MARPO8.620e-1340.70ABC transporter domain-containing protein n=2 Tax=... [more]
A0A2K1L8H1_PHYPA6.750e-1143.02ABC transporter domain-containing protein n=2 Tax=... [more]
A0A1Y1IEV1_KLENI9.240e-1139.53ABC transporter G family n=1 Tax=Klebsormidium nit... [more]
A0A5C7ICG9_9ROSI5.980e-1044.19ABC transporter domain-containing protein n=1 Tax=... [more]
A0A8J5SHR1_ZIZPA6.020e-1041.86AAA domain-containing protein n=1 Tax=Zizania palu... [more]
A0A2K1JQD6_PHYPA6.030e-1041.86ABC transporter domain-containing protein n=3 Tax=... [more]
A0A0K9P591_ZOSMR8.190e-1038.37ABC transporter G family member n=1 Tax=Zostera ma... [more]
A0A2K1KX83_PHYPA8.230e-1043.21ABC transporter domain-containing protein n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16823contigEcto-sp13_S_contig16823:2664..3814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score163.3
Seed ortholog evalue4.9e-38
Seed eggNOG ortholog2880.D7FP97
Preferred nameABCG4
Model size264
KEGG koko:K05681,ko:K21396
KEGG TC3.A.1.204
KEGG Pathwayko01523,ko02010,ko04976,map01523,map02010,map04976
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005775,GO:0005886,GO:0006810,GO:0007034,GO:0007275,GO:0008150,GO:0009555,GO:0009653,GO:0009987,GO:0010208,GO:0010927,GO:0015399,GO:0015405,GO:0015893,GO:0016020,GO:0016021,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022804,GO:0022857,GO:0030198,GO:0031224,GO:0031974,GO:0032501,GO:0032502,GO:0032989,GO:0042221,GO:0042493,GO:0042623,GO:0042626,GO:0042891,GO:0043062,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043492,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045229,GO:0048229,GO:0048646,GO:0048856,GO:0048869,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0070013,GO:0071840,GO:0071944,GO:0085029
Exons2
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0061@2759
Cds size255
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462882.1379485-UTR-Ecto-sp13_S_contig16823:2663..26711681462882.1379485-UTR-Ecto-sp13_S_contig16823:2663..2671Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16823 2664..2671 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462882.1498199-CDS-Ecto-sp13_S_contig16823:2671..28121681462882.1498199-CDS-Ecto-sp13_S_contig16823:2671..2812Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16823 2672..2812 +
1681462882.1597328-CDS-Ecto-sp13_S_contig16823:3700..38141681462882.1597328-CDS-Ecto-sp13_S_contig16823:3700..3814Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16823 3701..3814 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16823.4886.1prot_Ecto-sp13_S_contig16823.4886.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16823 2672..3814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16823.4886.1

>prot_Ecto-sp13_S_contig16823.4886.1 ID=prot_Ecto-sp13_S_contig16823.4886.1|Name=mRNA_Ecto-sp13_S_contig16823.4886.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
MEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDL
PPAGFPFQILAIFMTLLEGNAFATFVSGAAPDPLT
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mRNA from alignment at Ecto-sp13_S_contig16823:2664..3814+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16823.4886.1 ID=mRNA_Ecto-sp13_S_contig16823.4886.1|Name=mRNA_Ecto-sp13_S_contig16823.4886.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1151bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16823:2664..3814+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGATCTTCATGGAGGAGCGGTCCATCTACACCCGAGAGCACAGCAGAGGG GCCTACCGCGTCATATCCTACCTGCTGTGCAACTTCCTCATCTACCTCCC CGTGTGCCTGGTCATGTCGGTGGCCTTCACCGCCATCTCCTACTTCATGG TGCGTTGGTTTGTCTCCCTTTGTCGTCCCGCGTATTCTGGGCTTCAAGCC TTGCACCCATTGGTACCTCTAGGGTGGGTTGACGGACTGGATGAAAGAGT GAATGCGTAGTTTTCGTGCGGTGTCTGTTCTGCTTTTTCCGAATGTTCTT GCCTACACGCGCGGGATGACAAAAGTGTGCGTTGATTCTCGGCCAACTAG TAGTGTTGTGTGTGTGCGCGCGGGCACCAACCACAGCGCGCTGACCCCCC TGCCCCCCACGTCACTGCTCTATCGTCGCACATGGACCTCTCACGCAAGT CTACCAAAGTTTTTTCTCTCTCTCTTGTCTCTAGGACTCGAGGCCAGCGT GAGACCTAGGGGCTAGTAAAACCAGCCCTCGTAGGTTTGTGCATTTGGCC TTTCACCCAAGTCTTTGTTCAGCTCACCCTCTCTCCGCACAAACACCGTC GTTGTCCTTACGTATGGACTTGGGAGTTGAGTTTATTCACTCTGTCGGGA AAAAATAATTCGCCAGAGTCTTGGCGTGCCAGAGAGAGCAACGCGGGAAA AACGAGCAAGGCGGTACAAATTGGAGGCTTTTTGTTGTTTCGCACCCCCA GCAAGTGCCAGTGTGAGTCACACATACCGTCCCAACGCACAAGCTCACGG AGGCACTGGTATTGGACGAAGTTGCGCAACACGACCTCCGCCCGTTGTAC AAAAGCTTGGCGTCGAGAGTCCCCCAAGCGCCGATCAAATTGCTTCACCA ACCAACGATGTATATCCCTGTCACGAGCCAACCCGGTGGCCCCCCCCGAG CACCCCTGCATGTCTGAACATTGGCTGACAACTCCCCCCCCCGCCCCGGC CATGTACACCGGCTATCACACGCTTTCTTTTTTATAGATCGACCTTCCTC CAGCTGGTTTTCCTTTCCAAATCCTGGCCATCTTCATGACTCTGCTGGAG GGGAATGCTTTTGCAACCTTCGTTTCCGGTGCTGCCCCTGATCCGCTTAC G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16823:2664..3814+

>mRNA_Ecto-sp13_S_contig16823.4886.1 ID=mRNA_Ecto-sp13_S_contig16823.4886.1|Name=mRNA_Ecto-sp13_S_contig16823.4886.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16823:2664..3814+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGAGCGGTCCATCTACACCCGAGAGCACAGCAGAGGGGCCTACCG
CGTCATATCCTACCTGCTGTGCAACTTCCTCATCTACCTCCCCGTGTGCC
TGGTCATGTCGGTGGCCTTCACCGCCATCTCCTACTTCATGATCGACCTT
CCTCCAGCTGGTTTTCCTTTCCAAATCCTGGCCATCTTCATGACTCTGCT
GGAGGGGAATGCTTTTGCAACCTTCGTTTCCGGTGCTGCCCCTGATCCGC
TTACG
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