mRNA_Ecto-sp13_S_contig16823.4886.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16823.4886.1 vs. uniprot
Match: D7FP97_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP97_ECTSI) HSP 1 Score: 169 bits (427), Expect = 1.790e-47 Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 3
Query: 3 IFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDLPPAGFPFQILAIFMTLLEGNAFATFVSGAAPDPLT 263
IFMEERSIYTREHSRGAYRV+SYLLCNFLIYLPVCLVMSVAFTAISYFMIDLPPAGFPFQILAIFMTLLEGNAFATFVSG+APDPLT
Sbjct: 465 IFMEERSIYTREHSRGAYRVMSYLLCNFLIYLPVCLVMSVAFTAISYFMIDLPPAGFPFQILAIFMTLLEGNAFATFVSGSAPDPLT 551
BLAST of mRNA_Ecto-sp13_S_contig16823.4886.1 vs. uniprot
Match: A0A6S9KQH8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KQH8_HETAK) HSP 1 Score: 87.0 bits (214), Expect = 4.520e-18 Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = 3
Query: 3 IFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDLPPAG--FPFQILAIFMTLLEGNAFATFVSGAAPDPLT 263
IF+ ER I+TRE+SRGAYR ISY+L L+++PV ++ + FT++S+FM+ LP F FQ+L + +T GN F T +SG PD LT
Sbjct: 428 IFLNERDIFTRENSRGAYRSISYVLAGTLVFIPVTFILGLVFTSVSWFMVGLPNDANLFFFQVLTLLVTCFLGNCFCTLISGIVPDALT 516
BLAST of mRNA_Ecto-sp13_S_contig16823.4886.1 vs. uniprot
Match: A0A2R6XAD8_MARPO (ABC transporter domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XAD8_MARPO) HSP 1 Score: 72.0 bits (175), Expect = 8.620e-13 Identity = 35/86 (40.70%), Postives = 57/86 (66.28%), Query Frame = 3
Query: 3 IFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDL--PPAGFPFQILAIFMTLLEGNAFATFVSGAAPD 254
IF+EER I+ RE SRGAYR +Y++ ++ +P +++++ F+ ISY+++ L P F F L +F+ LL N+F +FVSG P+
Sbjct: 492 IFLEERQIFIRETSRGAYRAATYVISGAIVIIPFLMILAIVFSTISYWLVGLVAEPGPFFFFTLTVFLVLLVANSFVSFVSGLVPN 577
BLAST of mRNA_Ecto-sp13_S_contig16823.4886.1 vs. uniprot
Match: A0A2K1L8H1_PHYPA (ABC transporter domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L8H1_PHYPA) HSP 1 Score: 66.6 bits (161), Expect = 6.750e-11 Identity = 37/86 (43.02%), Postives = 54/86 (62.79%), Query Frame = 3
Query: 3 IFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDLPP-AGFPFQ-ILAIFMTLLEGNAFATFVSGAAPD 254
+F+ ER I+ RE SRGAYRV +Y+L L+ LP V+++ F+ +SYFM+ L AG F + +F+TL NAF F++ PD
Sbjct: 427 VFLNERQIFIRETSRGAYRVSAYVLSQALVILPFLFVLAMIFSCVSYFMVGLAKDAGAFFSFVFILFLTLAVANAFVAFMASFVPD 512
BLAST of mRNA_Ecto-sp13_S_contig16823.4886.1 vs. uniprot
Match: A0A1Y1IEV1_KLENI (ABC transporter G family n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IEV1_KLENI) HSP 1 Score: 66.2 bits (160), Expect = 9.240e-11 Identity = 34/86 (39.53%), Postives = 54/86 (62.79%), Query Frame = 3
Query: 3 IFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDLPPAGFPFQ--ILAIFMTLLEGNAFATFVSGAAPD 254
+F+EER I+ RE SRGAYR ++++ L+Y P L+++VAF AISYFM+ + PF +L++++ L+ N F F P+
Sbjct: 437 VFLEERLIFVRETSRGAYRTSAFVVAQQLVYAPFFLLLAVAFCAISYFMVGMAAGTEPFLFFVLSVWLVLIVANTFVLFWGAVVPN 522
BLAST of mRNA_Ecto-sp13_S_contig16823.4886.1 vs. uniprot
Match: A0A5C7ICG9_9ROSI (ABC transporter domain-containing protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7ICG9_9ROSI) HSP 1 Score: 63.9 bits (154), Expect = 5.980e-10 Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 3
Query: 3 IFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDLPPA--GFPFQILAIFMTLLEGNAFATFVSGAAPD 254
IF++ER I TRE SRGAYRV SY+L N LI++P L++ + FT Y++I L GF + L ++M LL N+F S P+
Sbjct: 401 IFLQERGILTRETSRGAYRVSSYVLSNTLIFIPFLLMVGLLFTTPVYWLIGLRRDIDGFMYFSLVVWMVLLMSNSFVACFSALVPN 486
BLAST of mRNA_Ecto-sp13_S_contig16823.4886.1 vs. uniprot
Match: A0A8J5SHR1_ZIZPA (AAA domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5SHR1_ZIZPA) HSP 1 Score: 63.9 bits (154), Expect = 6.020e-10 Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 3
Query: 3 IFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDLPPA--GFPFQILAIFMTLLEGNAFATFVSGAAPD 254
+F+ ER IY RE + AYR SY L N ++ P +V+S+AFT IS+F + L GF F +L + + G F TF+SG PD
Sbjct: 531 VFLVERYIYLRETAHNAYRRSSYTLSNAIVAFPPLVVLSLAFTVISFFAVGLAGGVGGFLFFVLIVLASFWAGGGFVTFLSGVIPD 616
BLAST of mRNA_Ecto-sp13_S_contig16823.4886.1 vs. uniprot
Match: A0A2K1JQD6_PHYPA (ABC transporter domain-containing protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JQD6_PHYPA) HSP 1 Score: 63.9 bits (154), Expect = 6.030e-10 Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 3
Query: 3 IFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDLPPAG--FPFQILAIFMTLLEGNAFATFVSGAAPD 254
IF+EER+I TRE SRGAYRV SY+L + LI+LP +++ + Y ++ L P F F +L I++ L+ N+F +F+S D
Sbjct: 481 IFLEERTILTRETSRGAYRVSSYVLSSTLIFLPFLFFVALLYAGPVYHLVGLAPQSDAFIFFLLVIWLVLVTANSFVSFLSAMVSD 566
BLAST of mRNA_Ecto-sp13_S_contig16823.4886.1 vs. uniprot
Match: A0A0K9P591_ZOSMR (ABC transporter G family member n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9P591_ZOSMR) HSP 1 Score: 63.5 bits (153), Expect = 8.190e-10 Identity = 33/86 (38.37%), Postives = 56/86 (65.12%), Query Frame = 3
Query: 3 IFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDL--PPAGFPFQILAIFMTLLEGNAFATFVSGAAPD 254
IF++ER+I TRE +RGAYR+ SY+ N +I+LP L +++ ++ +Y+M+ L P F + L I++ +L N+F +F S P+
Sbjct: 412 IFLQERTILTRETTRGAYRISSYVTANTVIFLPFLLSVAILYSLPAYWMVGLRRDPTAFLYFTLVIWLVVLMANSFVSFFSALVPN 497
BLAST of mRNA_Ecto-sp13_S_contig16823.4886.1 vs. uniprot
Match: A0A2K1KX83_PHYPA (ABC transporter domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KX83_PHYPA) HSP 1 Score: 63.5 bits (153), Expect = 8.230e-10 Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = 3
Query: 3 IFMEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDLPPA--GFPFQILAIFMTLLEGNAFATFVS 239
IF+EER+I TRE SRGAYRV SY+L + L++LP L +++ + Y+++ L P F F +L I++ L+ N+F +F S
Sbjct: 472 IFLEERNILTRETSRGAYRVSSYVLSSTLVFLPFLLFIALLYAGPVYYLVGLAPQVDAFLFFLLVIWLILVTANSFVSFFS 552 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16823.4886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16823.4886.1 >prot_Ecto-sp13_S_contig16823.4886.1 ID=prot_Ecto-sp13_S_contig16823.4886.1|Name=mRNA_Ecto-sp13_S_contig16823.4886.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp MEERSIYTREHSRGAYRVISYLLCNFLIYLPVCLVMSVAFTAISYFMIDLback to top mRNA from alignment at Ecto-sp13_S_contig16823:2664..3814+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16823.4886.1 ID=mRNA_Ecto-sp13_S_contig16823.4886.1|Name=mRNA_Ecto-sp13_S_contig16823.4886.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1151bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16823:2664..3814+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16823:2664..3814+ >mRNA_Ecto-sp13_S_contig16823.4886.1 ID=mRNA_Ecto-sp13_S_contig16823.4886.1|Name=mRNA_Ecto-sp13_S_contig16823.4886.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16823:2664..3814+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |