mRNA_Ecto-sp13_S_contig16817.4881.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16817.4881.1
Unique NamemRNA_Ecto-sp13_S_contig16817.4881.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16817.4881.1 vs. uniprot
Match: A0A6H5KXT9_9PHAE (cwf21 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXT9_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 4.260e-45
Identity = 90/106 (84.91%), Postives = 92/106 (86.79%), Query Frame = 1 
Query:   31 RRPAKVEAKIFELQEAMADRGYSDAEIEEK----------REGNGQKASLLKGKKGAGAGGGAGTMDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERK 318
            +R  KVEAKIFELQEAMADRGYSDAEIEEK          REG+GQKASL KGKKG GAGGGAGTMDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERK
Sbjct:   63 QRKRKVEAKIFELQEAMADRGYSDAEIEEKVAEVRKGLEEREGSGQKASLPKGKKGTGAGGGAGTMDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERK 168
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BLAST of mRNA_Ecto-sp13_S_contig16817.4881.1 vs. uniprot
Match: D7G1H6_ECTSI (cwf21 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1H6_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 6.810e-40
Identity = 86/107 (80.37%), Postives = 88/107 (82.24%), Query Frame = 1 
Query:   31 RRPAKVEAKIFELQEAMADRGYSDAEIEEK----------REGNGQKASLLKGKKGAGAGGG-AGTMDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERK 318
            +R  KVEAKIFELQEAMADRGYSDAEIEEK          REG+GQKASLLKGKKG       AGTMDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERK
Sbjct:   94 QRKRKVEAKIFELQEAMADRGYSDAEIEEKVAEVRKGLEEREGSGQKASLLKGKKGXXXXXXXAGTMDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERK 200
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BLAST of mRNA_Ecto-sp13_S_contig16817.4881.1 vs. uniprot
Match: A0A836CB89_9STRA (cwf21 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB89_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.730e-14
Identity = 51/102 (50.00%), Postives = 64/102 (62.75%), Query Frame = 1 
Query:   34 RPAKVEAKIFELQEAMADRGYSDAEIEEK-----REGNGQKASL-LKGKKGAGAGGGAGTMDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERKK 321
            R  KVEAKIFELQEAMA+RGYSDA+IE K     RE + + +   + G    G+G       +H+    KA +N RMR+AFGLG DY  GE+FD E Q +KK
Sbjct:   67 RRRKVEAKIFELQEAMAERGYSDADIEAKVAEVRRELDVRTSQQDVPGLPEKGSG-------THVEHAHKAQENERMRDAFGLGKDYTEGESFDHELQAKKK 161
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BLAST of mRNA_Ecto-sp13_S_contig16817.4881.1 vs. uniprot
Match: A0A7R9UG21_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UG21_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.640e-10
Identity = 39/100 (39.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   34 RPAKVEAKIFELQEAMADRGYSDAEIEEKREGNGQKASLLKGKKGAGAGGGAGTMDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERKKEARM 333
            R   +EAK+FE +  + D G  D +IEE+ +    +ASL +     G+ G  GT +SH+R  +KA + RR+++AF + +DY  G+AFD EA+E++K  R+
Sbjct:   65 RKRAIEAKLFEERVRLEDDGLEDEKIEERLKK--MRASLERSSGARGSFGSEGT-NSHVRAARKAQERRRLKDAFRIREDYVEGQAFDREAREQEKRKRI 161
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BLAST of mRNA_Ecto-sp13_S_contig16817.4881.1 vs. uniprot
Match: V9E3X3_PHYPR (cwf21 domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=V9E3X3_PHYPR)

HSP 1 Score: 63.2 bits (152), Expect = 2.850e-9
Identity = 41/111 (36.94%), Postives = 61/111 (54.95%), Query Frame = 1 
Query:    7 PAPVRFFSRRPAKVEAKIFELQEAMADRGYSDAEIEEKREGNGQKASLLKGKKGAGAGGGAGTMDS---HMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERKKEAR 330
            P P      +  KVE ++ E+   M DRG    EI++K +   ++  LL     AG  G     DS   H R  +K +DN+R+++AFG+  DY AGE+FD E QER+++ R
Sbjct:   59 PNPDILLHEQKRKVELQLLEMSLEMEDRGCDPDEIQDKVKR--ERERLLARLNDAGDRGRQSAKDSESTHARQKRKEEDNKRIKDAFGIATDYVAGESFDPEMQERRRQER 167
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BLAST of mRNA_Ecto-sp13_S_contig16817.4881.1 vs. uniprot
Match: G4Z8N6_PHYSP (cwf21 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z8N6_PHYSP)

HSP 1 Score: 61.6 bits (148), Expect = 5.590e-9
Identity = 39/96 (40.62%), Postives = 57/96 (59.38%), Query Frame = 1 
Query:   43 KVEAKIFELQEAMADRGYSDAEIEEKREGNGQKASLLKGKKGAGAGGGAGTMD---SHMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERKK 321
            KVE ++ E+   M DRG    EI+EK +   ++  LL     A   GG    D   SH R  +K ++N+R+++AFG+  DY AGE+FD EAQER++
Sbjct:   71 KVELQLLEISLEMEDRGCDPEEIQEKVKR--ERERLLARLNEASDRGGEKAKDAESSHARQKRKEEENKRIKDAFGIATDYVAGESFDPEAQERRR 164
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BLAST of mRNA_Ecto-sp13_S_contig16817.4881.1 vs. uniprot
Match: A0A329RLF0_9STRA (cwf21 domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RLF0_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.310e-8
Identity = 40/111 (36.04%), Postives = 61/111 (54.95%), Query Frame = 1 
Query:    7 PAPVRFFSRRPAKVEAKIFELQEAMADRGYSDAEIEEKREGNGQKASLLKGKKGAGAGGGAGTMDS---HMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERKKEAR 330
            P P      +  KVE ++ E+   M DRG    EI++K +   ++  LL     AG  G     DS   H R  +K ++N+R+++AFG+  DY AGE+FD E QER+++ R
Sbjct:   59 PNPDILLHEQKRKVELQLLEMSLEMEDRGCDPEEIQDKVKR--ERERLLARLNDAGDRGREKAKDSESSHARQKRKEEENKRIKDAFGIATDYVAGESFDPEMQERRRQER 167
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BLAST of mRNA_Ecto-sp13_S_contig16817.4881.1 vs. uniprot
Match: A0A8J5ME78_9STRA (cwf21 domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5ME78_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.390e-8
Identity = 40/111 (36.04%), Postives = 61/111 (54.95%), Query Frame = 1 
Query:    7 PAPVRFFSRRPAKVEAKIFELQEAMADRGYSDAEIEEKREGNGQKASLLKGKKGAGAGGGAGTMDS---HMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERKKEAR 330
            P P      +  KVE ++ E+   M DRG    EI++K +   ++  LL     AG  G     DS   H R  +K ++N+R+++AFG+  DY AGE+FD E QER+++ R
Sbjct:   59 PNPDILLHEQKRKVELQLLEMSLEMKDRGCDPEEIQDKVKR--ERERLLARLNDAGDRGREKAKDSESSHARQKRKEEENKRIKDAFGIATDYVAGESFDPEMQERRRQER 167
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16817.4881.1 vs. uniprot
Match: W2QTM4_PHYPN (cwf21 domain-containing protein (Fragment) n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2QTM4_PHYPN)

HSP 1 Score: 60.5 bits (145), Expect = 1.450e-8
Identity = 40/111 (36.04%), Postives = 60/111 (54.05%), Query Frame = 1 
Query:    7 PAPVRFFSRRPAKVEAKIFELQEAMADRGYSDAEIEEKREGNGQKASLLKGKKGAGAGGGAGTMDS---HMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERKKEAR 330
            P P      +  KVE ++ E+   M DRG    EI++K +   ++  LL     AG  G     DS   H R  +K +DN+R+++AF +  DY AGE+FD E QER+++ R
Sbjct:   59 PNPDILLHEQKRKVELQLLEMSLEMEDRGCDPDEIQDKVKR--ERERLLARLNDAGDRGRESAKDSESTHARQKRKEEDNKRIKDAFDIATDYVAGESFDPEMQERRRQER 167
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BLAST of mRNA_Ecto-sp13_S_contig16817.4881.1 vs. uniprot
Match: A0A8K1CKR8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CKR8_PYTOL)

HSP 1 Score: 58.2 bits (139), Expect = 1.580e-7
Identity = 33/98 (33.67%), Postives = 57/98 (58.16%), Query Frame = 1 
Query:   43 KVEAKIFELQEAMADRGYSDAEIEEKREGNGQK-ASLLKGKKGAGAGGGAGTMDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERKKEARM 333
            ++E K+ EL   M +RG  + EI++K +   +K    L+      +  G     +H R  +K ++NRRM+EAFG+ +D+  GE+FD E Q +++E R+
Sbjct:   69 QIEVKLMELSMEMEERGCDEDEIQDKVQREREKLVKQLESATAKASRSGRPDDSTHARAQRKEEENRRMKEAFGIAEDHVPGESFDPEMQAKRREERI 166
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16817.4881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5KXT9_9PHAE4.260e-4584.91cwf21 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G1H6_ECTSI6.810e-4080.37cwf21 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A836CB89_9STRA2.730e-1450.00cwf21 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A7R9UG21_9STRA3.640e-1039.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
V9E3X3_PHYPR2.850e-936.94cwf21 domain-containing protein n=8 Tax=Phytophtho... [more]
G4Z8N6_PHYSP5.590e-940.63cwf21 domain-containing protein n=1 Tax=Phytophtho... [more]
A0A329RLF0_9STRA1.310e-836.04cwf21 domain-containing protein n=1 Tax=Phytophtho... [more]
A0A8J5ME78_9STRA1.390e-836.04cwf21 domain-containing protein n=1 Tax=Phytophtho... [more]
W2QTM4_PHYPN1.450e-836.04cwf21 domain-containing protein (Fragment) n=1 Tax... [more]
A0A8K1CKR8_PYTOL1.580e-733.67Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16817contigEcto-sp13_S_contig16817:399..1470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score150.6
Seed ortholog evalue4.4e-34
Seed eggNOG ortholog2880.D7G1H6
Model size339
KEGG koko:K06110,ko:K13172
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005737,GO:0005829,GO:0006139,GO:0006325,GO:0006355,GO:0006396,GO:0006397,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008380,GO:0008469,GO:0008757,GO:0009889,GO:0009909,GO:0009987,GO:0010219,GO:0010220,GO:0010467,GO:0010468,GO:0010556,GO:0016043,GO:0016070,GO:0016071,GO:0016273,GO:0016274,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018193,GO:0018195,GO:0018216,GO:0019219,GO:0019222,GO:0019538,GO:0019918,GO:0031323,GO:0031326,GO:0032259,GO:0032991,GO:0034641,GO:0034969,GO:0035246,GO:0035247,GO:0036211,GO:0042054,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0043985,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0048518,GO:0048580,GO:0048583,GO:0048584,GO:0048831,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051239,GO:0051252,GO:0051276,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1903506,GO:1990904,GO:2000026,GO:2000112,GO:2000241,GO:2001141
Exons2
EggNOG free text desc.RNA splicing
EggNOG OGsKOG1869@1,KOG1869@2759
Cds size339
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462881.8632107-CDS-Ecto-sp13_S_contig16817:398..6171681462881.8632107-CDS-Ecto-sp13_S_contig16817:398..617Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16817 399..617 -
1681462881.8748639-CDS-Ecto-sp13_S_contig16817:1350..14701681462881.8748639-CDS-Ecto-sp13_S_contig16817:1350..1470Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16817 1351..1470 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16817.4881.1prot_Ecto-sp13_S_contig16817.4881.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16817 399..1470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16817.4881.1

>prot_Ecto-sp13_S_contig16817.4881.1 ID=prot_Ecto-sp13_S_contig16817.4881.1|Name=mRNA_Ecto-sp13_S_contig16817.4881.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
MNPAPVRFFSRRPAKVEAKIFELQEAMADRGYSDAEIEEKREGNGQKASL
LKGKKGAGAGGGAGTMDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFDE
EAQERKKEARMK*
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mRNA from alignment at Ecto-sp13_S_contig16817:399..1470-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16817.4881.1 ID=mRNA_Ecto-sp13_S_contig16817.4881.1|Name=mRNA_Ecto-sp13_S_contig16817.4881.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1072bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16817:399..1470- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACCCTGCGCCTGTCCGTTTTTTTTCTCGCCGTCCGGCTAAGGTGGA
AGCCAAGATCTTCGAGCTGCAGGAAGCGATGGCCGACCGTGGCTACAGCG
ACGCCGAGATTGAGGAAAAGGTAAACACAGGGAAATTGTGTTTCTGTGTC
ATGTTTAGGTTGCTCGGTCTCGCGTGGTTGGACTTGTGTTGCCACTGCTG
CGTGTCGATCACCTCCTTTTTGGTCCGTTAGCCTTGGTTTCCTCCCCCGT
TCGGCCACGGGGTGCGGCATGCGTGTTGTGCGTACTTATCCTCGTTGGTT
TGAGTTTCTTAACAGTGTATTTTCTGCTCCAAAATCGCATGTTTGCTTCT
AATCGTGCTGTCAGAAGGTTCCAGGTCGCGCCATGTTTCTCGAACCCCGG
TGTGTTGGGCGCTGTTAACGCTGCTGTGGCTGCCGTTCCAGTTGTGTCAT
TGTCGTTGTTTTTGTTGTGGTTGTTGTTGTGTAATGTTGCTGCTGTTGCT
GTAATTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCCTG
TTGTGTTGTTGTCGTTGTTGTTGCTGTTGTTGTTGGTGGATGTGGTGTTC
ATGTTGTTACTGCTGTTGTTGTTGTTACTGCTGTTGCTGTTGTTACTGCT
GTTGCTGCTGTTGCTGCTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
TGGGATTGGTTAGTTGTTGTTTTGTTGTCTCGGTCGTTGTTGTCGTGCTT
GTAGATGCTCACGTCGCTATTTCGTTTCGGTGGTGCCGTTATTTCGTGTC
TCGCGTGCCCCCTCAAAATCCAGGTAGCAGAGGTCCGCAAAGGGCTGGAA
GAGCGGGAAGGGAACGGCCAAAAGGCGTCCCTGCTCAAGGGCAAGAAGGG
CGCCGGCGCCGGCGGCGGAGCGGGTACCATGGACTCCCATATGCGGGACG
TGAAGAAGGCGGACGACAACCGCCGCATGAGAGAGGCGTTCGGGCTCGGG
GATGACTACGCGGCGGGGGAGGCGTTCGACGAGGAAGCCCAGGAGCGGAA
GAAGGAAGCGCGCATGAAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16817:399..1470-

>mRNA_Ecto-sp13_S_contig16817.4881.1 ID=mRNA_Ecto-sp13_S_contig16817.4881.1|Name=mRNA_Ecto-sp13_S_contig16817.4881.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16817:399..1470- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACCCTGCGCCTGTCCGTTTTTTTTCTCGCCGTCCGGCTAAGGTGGA
AGCCAAGATCTTCGAGCTGCAGGAAGCGATGGCCGACCGTGGCTACAGCG
ACGCCGAGATTGAGGAAAAGCGGGAAGGGAACGGCCAAAAGGCGTCCCTG
CTCAAGGGCAAGAAGGGCGCCGGCGCCGGCGGCGGAGCGGGTACCATGGA
CTCCCATATGCGGGACGTGAAGAAGGCGGACGACAACCGCCGCATGAGAG
AGGCGTTCGGGCTCGGGGATGACTACGCGGCGGGGGAGGCGTTCGACGAG
GAAGCCCAGGAGCGGAAGAAGGAAGCGCGCATGAAGTGA
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